sbuild (Debian sbuild) 0.78.1 (09 February 2019) on 36857dea695f

+==============================================================================+
| loki 2.4.7.4-8 (armhf)                       Tue, 05 Mar 2019 12:47:42 +0000 |
+==============================================================================+

Package: loki
Version: 2.4.7.4-8
Source Version: 2.4.7.4-8
Distribution: unstable-amd64-sbuild
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-6d4bd5f7-432e-4b55-9448-140f7f0f46e1' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/loki-de9pNF/resolver-8n0PSp' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
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Hit:1 http://10.116.41.102/debian sid InRelease
Hit:2 http://cdn-fastly.deb.debian.org/debian sid InRelease
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl libmailtools-perl
  libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime
Use 'apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

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| Fetch source files                                                           |
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Local sources
-------------

/home/build/sbuild-setup/repo/pool/main/l/loki/loki_2.4.7.4-8.dsc exists in /home/build/sbuild-setup/repo/pool/main/l/loki; copying to chroot
I: NOTICE: Log filtering will replace 'build/loki-de9pNF/loki-2.4.7.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/loki-de9pNF' with '<<BUILDDIR>>'

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| Install package build dependencies                                           |
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Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
Filtered Build-Depends: debhelper (>= 11~), build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [396 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [486 B]
Fetched 1839 B in 0s (168 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl libmailtools-perl
  libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf
  libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1
  libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf
  libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2
  libstdc++-8-dev:armhf libstdc++6:armhf libtool libubsan1:armhf libuchardet0
  linux-libc-dev:armhf m4 man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf
  libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk
  m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf
  libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1
  libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf
  libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2
  libstdc++-8-dev:armhf libstdc++6:armhf libtool libubsan1:armhf libuchardet0
  linux-libc-dev:armhf m4 man-db po-debconf
  sbuild-build-depends-main-dummy:armhf
0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded.
Need to get 904 B/18.5 MB of archives.
After this operation, 79.1 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [904 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 904 B in 0s (0 B/s)
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Setting up bsdmainutils (11.1.2+b1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Initial Foreign Architectures: armhf 
Arch check ok (armhf included in any all)

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| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.16.0-4-amd64 #1 SMP Debian 3.16.51-3 (2017-12-13) amd64 (x86_64)
Toolchain package versions: binutils_2.31.1-14 dpkg-dev_1.19.5 g++-8_8.3.0-2 gcc-8_8.3.0-2 libc6-dev_2.28-7 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-armhf-cross_8.2.0-20cross1 libstdc++6_8.3.0-2 libstdc++6-armhf-cross_8.2.0-20cross1 linux-libc-dev_4.19.20-1
Package versions: adduser_3.118 apt_1.8.0~rc4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-14 binutils-arm-linux-gnueabihf_2.31.1-14 binutils-common_2.31.1-14 binutils-x86-64-linux-gnu_2.31.1-14 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20190110 ccache_3.6-1 coreutils_8.30-2 cpp_4:8.2.0-2 cpp-8_8.3.0-2 cpp-8-arm-linux-gnueabihf_8.2.0-20cross1 cpp-arm-linux-gnueabihf_4:8.2.0-2 cross-config_2.6.15-2 crossbuild-essential-armhf_12.5 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.7-2 dirmngr_2.2.12-1 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.44.5-1 eatmydata_105-7 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190209-2 g++_4:8.2.0-2 g++-8_8.3.0-2 g++-8-arm-linux-gnueabihf_8.2.0-20cross1 g++-arm-linux-gnueabihf_4:8.2.0-2 gcc_4:8.2.0-2 gcc-8_8.3.0-2 gcc-8-arm-linux-gnueabihf_8.2.0-20cross1 gcc-8-arm-linux-gnueabihf-base_8.2.0-20cross1 gcc-8-base_8.3.0-2 gcc-8-cross-base_8.2.0-20cross1 gcc-arm-linux-gnueabihf_4:8.2.0-2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1 gnupg-l10n_2.2.12-1 gnupg-utils_2.2.12-1 gpg_2.2.12-1 gpg-agent_2.2.12-1 gpg-wks-client_2.2.12-1 gpg-wks-server_2.2.12-1 gpgconf_2.2.12-1 gpgsm_2.2.12-1 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-5 libapt-pkg5.0_1.8.0~rc4 libarchive-zip-perl_1.64-1 libasan5_8.3.0-2 libasan5-armhf-cross_8.2.0-20cross1 libassuan0_2.5.2-1 libatomic1_8.3.0-2 libatomic1-armhf-cross_8.2.0-20cross1 libattr1_1:2.4.47-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libauthen-sasl-perl_2.1600-1 libbinutils_2.31.1-14 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-7 libc-dev-bin_2.28-7 libc6_2.28-7 libc6-armhf-cross_2.28-4cross1 libc6-dev_2.28-7 libc6-dev-armhf-cross_2.28-4cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-2 libcom-err2_1.44.5-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdata-dump-perl_1.23-1 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.247 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libeatmydata1_105-7 libelf1_0.176-1 libencode-locale-perl_1.05-1 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.1.1-1 libfile-which-perl_1.23-1 libfont-afm-perl_1.20-2 libgcc-8-dev_8.3.0-2 libgcc-8-dev-armhf-cross_8.2.0-20cross1 libgcc1_1:8.3.0-2 libgcc1-armhf-cross_1:8.2.0-20cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-3 libgdbm6_1.18.1-3 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.3.0-2 libgomp1-armhf-cross_8.2.0-20cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libhtml-form-perl_6.03-1 libhtml-format-perl_2.12-1 libhtml-parser-perl_3.72-3+b3 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.04-1 libhttp-daemon-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.18-1 libhttp-negotiate-perl_6.01-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.060-3 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-2 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmailtools-perl_2.18-1 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-2 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnet-http-perl_6.18-1 libnet-smtp-ssl-perl_1.04-1 libnet-ssleay-perl_1.85-2+b1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libquadmath0_8.3.0-2 libreadline7_7.0-5 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-1 libss2_1.44.5-1 libssl1.1_1.1.1b-1 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-armhf-cross_8.2.0-20cross1 libstdc++6_8.3.0-2 libstdc++6-armhf-cross_8.2.0-20cross1 libsystemd0_241-1 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtry-tiny-perl_0.30-1 libtsan0_8.3.0-2 libubsan1_8.3.0-2 libubsan1-armhf-cross_8.2.0-20cross1 libuchardet0_0.0.6-3 libudev1_241-1 libunistring2_0.9.10-1 liburi-perl_1.76-1 libuuid1_2.33.1-0.1 libwww-perl_6.36-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-parser-perl_2.44-3 libxml-sax-base-perl_1.09-1 libxml-sax-expat-perl_0.51-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-0-2_0.2.1-1 libyaml-libyaml-perl_0.76+repack-1 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.20-1 linux-libc-dev-armhf-cross_4.19.13-1cross1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 openssl_1.1.1b-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 perl-openssl-defaults_3 pinentry-curses_1.1.0-1+b1 po-debconf_1.0.21 readline-common_7.0-5 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 uuid-runtime_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: loki
Binary: loki, loki-doc
Architecture: any all
Version: 2.4.7.4-8
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/loki
Vcs-Git: https://salsa.debian.org/med-team/loki.git
Build-Depends: debhelper (>= 11~)
Package-List:
 loki deb science optional arch=any
 loki-doc deb doc optional arch=all
Checksums-Sha1:
 ce7d6ff3ca6159c329ca0f5f6ed633bf265acd33 904260 loki_2.4.7.4.orig.tar.gz
 6580fa7a5a3fc06d7669dae5dd4bf8c1f1bb97f0 23912 loki_2.4.7.4-8.debian.tar.xz
Checksums-Sha256:
 78bc51f47fb756fcdc9ab55bc4c7dd649ee87aaa6bd9be87eac44e4a8eac9eb5 904260 loki_2.4.7.4.orig.tar.gz
 02b3277fbba549b48351df614ff12204c21f449482f3d71eecc2a2ca76b171ae 23912 loki_2.4.7.4-8.debian.tar.xz
Files:
 7764c55d3c3a33584a6f92740210b677 904260 loki_2.4.7.4.orig.tar.gz
 167c3b32c549c33f0b454e747278aa02 23912 loki_2.4.7.4-8.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 12 05:06:53 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./loki_2.4.7.4-8.dsc
dpkg-source: info: extracting loki in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking loki_2.4.7.4.orig.tar.gz
dpkg-source: info: unpacking loki_2.4.7.4-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_utils.patch
dpkg-source: info: applying 10_lex.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CCACHE_COMPRESS=1
CCACHE_DIR=/var/cache/ccache-sbuild
CCACHE_UMASK=002
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=build
PATH=/usr/lib/ccache:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=build
SCHROOT_SESSION_ID=unstable-amd64-sbuild-6d4bd5f7-432e-4b55-9448-140f7f0f46e1
SCHROOT_UID=1000
SCHROOT_USER=build
SHELL=/bin/sh
USER=build

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot -j16
dpkg-buildpackage: info: source package loki
dpkg-buildpackage: info: source version 2.4.7.4-8
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
   debian/rules override_dh_auto_configure-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --exec_prefix=/<<PKGBUILDDIR>>/debian/loki/usr
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf --exec_prefix=/<<PKGBUILDDIR>>/debian/loki/usr
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: loading site script /etc/dpkg-cross/cross-config.armhf
checking whether make sets $(MAKE)... yes
checking for DMALLOC library
Looking for dmalloc.h in ${prefix}/include and libdmalloc.a in ${prefix}/lib/arm-linux-gnueabihf
Looking for dmalloc.h in /usr/local/include and libdmalloc.a in /usr/local/lib
Looking for dmalloc.h in /usr/include and libdmalloc.a in /usr/lib
Looking for dmalloc.h in /sbuild-nonexistent/include and libdmalloc.a in /sbuild-nonexistent/lib
checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether arm-linux-gnueabihf-gcc accepts -g... yes
checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed
checking for flex... no
checking for lex... no
checking for bison... no
checking for byacc... no
checking for ranlib... /usr/bin/ranlib
checking for ar... /usr/bin/ar
checking for sed... /bin/sed
checking for cp... /bin/cp
checking for grep... /bin/grep
checking for mv... /bin/mv
checking for gzip... /bin/gzip
checking for chmod... /bin/chmod
checking for perl... /usr/bin/perl
checking for makedepend... :
checking for sin in -lm... yes
checking for accept in -lsocket... no
checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking values.h usability... yes
checking values.h presence... yes
checking for values.h... yes
checking for unistd.h... (cached) yes
checking sys/systeminfo.h usability... no
checking sys/systeminfo.h presence... no
checking for sys/systeminfo.h... no
checking for mode_t... yes
checking for off_t... yes
checking for pid_t... yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for socklen_t... 
yes
checking for an ANSI C-conforming const... yes
checking for vprintf... yes
checking for _doprnt... no
checking for memcpy... yes
checking for regcomp... yes
checking for strtod... yes
checking for strtol... yes
checking for gethostname... yes
checking for popen... yes
checking for snprintf... yes
checking for atexit... yes
checking for memmove... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libsrc/Makefile
config.status: creating prepsrc/Makefile
config.status: creating prepsrc/compat/Makefile
config.status: creating lokisrc/Makefile
config.status: creating test/Makefile
config.status: creating utils/Makefile
config.status: creating include/config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a
	make -j16
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make depend) \
done
make[2]: Entering directory '/<<PKGBUILDDIR>>/libsrc'
: -I../include/   io_stuff.c ranlib.c genrand.c ran_xtra.c mkbackup.c strsep.c utils.c remember.c peel_utils.c qsort.c min_deg.c bin_tree.c getopt_long.c
touch depend
make[2]: Leaving directory '/<<PKGBUILDDIR>>/libsrc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/prepsrc'
: -I../include  control_parse.c control_lex.c  check_het.c test_het.c prep.c calc_nrm.c write_report.c prep_utils.c gen_elim.c prep_do_peel_op.c write_data.c
touch depend
make[2]: Leaving directory '/<<PKGBUILDDIR>>/prepsrc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/lokisrc'
: -I../include  loki.c loki_peel.c loki_init.c alloc_loki.c loki_sample.c loki_pen.c loki_tlmoves.c meiosis_scan.c loki_identity.c sample_rand.c sample_effects.c loki_setup.c loki_dump.c sample_cens.c handle_res.c print_data.c calc_var_locus.c loki_output.c sample_nu.c loki_complex_peel.c loki_npl.c loki_simple_sample.c loki_simple_peel.c loki_trait_simple_peel.c loki_trait_simple_sample.c get_par_probs.c read_solar_idfile.c peel_to_par.c update_segs.c  param_parse.c param_lex.c read_binfiles.c loki_utils.c kinship.c genedrop.c mat_utils.c output_recomb.c seg_pen.c gen_pen.c loki_ibd.c get_founders.c pass_founder_genes.c 
touch depend
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lokisrc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/utils'
: -I../include  qavg.c hist.c
touch depend
make[2]: Leaving directory '/<<PKGBUILDDIR>>/utils'
touch depend
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make) \
done
make[2]: Entering directory '/<<PKGBUILDDIR>>/libsrc'
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o io_stuff.o io_stuff.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ranlib.o ranlib.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o genrand.o genrand.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ran_xtra.o ran_xtra.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mkbackup.o mkbackup.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o strsep.o strsep.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o utils.o utils.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o remember.o remember.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o peel_utils.o peel_utils.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o qsort.o qsort.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o min_deg.o min_deg.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o bin_tree.o bin_tree.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o getopt_long.o getopt_long.c
/usr/bin/ar cr libgen.a io_stuff.o ranlib.o genrand.o ran_xtra.o mkbackup.o strsep.o utils.o remember.o peel_utils.o qsort.o min_deg.o bin_tree.o getopt_long.o
/usr/bin/ranlib libgen.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/libsrc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/prepsrc'
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o control_parse.o control_parse.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o control_lex.o control_lex.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_data.o read_data.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o setup_ped.o setup_ped.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o recode_fact.o recode_fact.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o cleanup.o cleanup.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o restrict_data.o restrict_data.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o match_records.o match_records.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o init_fam.o init_fam.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o output_data.o output_data.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_marker_name.o get_marker_name.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep.o prep.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o calc_nrm.o calc_nrm.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o write_report.o write_report.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep_utils.o prep_utils.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gen_elim.o gen_elim.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep_do_peel_op.o prep_do_peel_op.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o write_data.o write_data.c
write_report.c: In function ‘WriteReport’:
write_report.c:286:7: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses]
    if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
       ^~~~~~~~~~~
write_report.c:300:7: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses]
    if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
       ^~~~~~~~~~~
prep_do_peel_op.c: In function ‘do_peel_op’:
prep_do_peel_op.c:238:19: warning: variable ‘fill’ set but not used [-Wunused-but-set-variable]
  double max_terms,fill;
                   ^~~~
lex.yy.c:2062:12: warning: ‘input’ defined but not used [-Wunused-function]
setup_ped.c: In function ‘setup_pedigree’:
setup_ped.c:426:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
           if(i!=id) {
             ^
setup_ped.c:430:11: note: here
           default:
           ^~~~~~~
/usr/bin/ar cr libprep.a control_parse.o control_lex.o read_data.o setup_ped.o recode_fact.o cleanup.o restrict_data.o match_records.o init_fam.o output_data.o get_marker_name.o
/usr/bin/ranlib libprep.a
gen_elim.c: In function ‘min_degree’:
gen_elim.c:1075:24: warning: variable ‘best_fg’ set but not used [-Wunused-but-set-variable]
  int x,i1,k1,k2,*trans,best_fg=0;
                        ^~~~~~~
gen_elim.c: In function ‘find_sequence’:
gen_elim.c:1156:17: warning: variable ‘mark’ set but not used [-Wunused-but-set-variable]
  struct Marker *mark;
                 ^~~~
gen_elim.c:1155:24: warning: variable ‘order1’ set but not used [-Wunused-but-set-variable]
  int *g_perm,*order=0,*order1;
                        ^~~~~~
gen_elim.c: In function ‘logical_peel’:
gen_elim.c:1268:17: warning: variable ‘mark’ set but not used [-Wunused-but-set-variable]
  struct Marker *mark;
                 ^~~~
gen_elim.c:1266:27: warning: variable ‘pp1’ set but not used [-Wunused-but-set-variable]
  struct Peelseq_Head *pp,*pp1;
                           ^~~
(cd compat; make)
make[3]: Entering directory '/<<PKGBUILDDIR>>/prepsrc/compat'
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I..  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o compat.o compat.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I..  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o merlin.o merlin.c
merlin.c: In function ‘process_qtdt’:
merlin.c:59:60: warning: parameter ‘error_check’ set but not used [-Wunused-but-set-parameter]
 int process_qtdt(int argc,char *argv[],char **LogFile,int *error_check,loki_time *lt)
                                                       ~~~~~^~~~~~~~~~~
merlin.c:162:10: warning: this statement may fall through [-Wimplicit-fallthrough=]
     nmark++;
     ~~~~~^~
merlin.c:163:5: note: here
     case 'A':
     ^~~~
/usr/bin/ar cr libcompat.a compat.o merlin.o
/usr/bin/ranlib libcompat.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prepsrc/compat'
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now  -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm 
make[2]: Leaving directory '/<<PKGBUILDDIR>>/prepsrc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/lokisrc'
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o param_parse.o param_parse.c
arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -DYY_NO_UNPUT param_lex.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_binfiles.o read_binfiles.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_utils.o loki_utils.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o kinship.o kinship.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o genedrop.o genedrop.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mat_utils.o mat_utils.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o output_recomb.o output_recomb.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o seg_pen.o seg_pen.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gen_pen.o gen_pen.c
arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -DIBD_COMPRESS_PROG=\"/bin/gzip\" loki_ibd.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_founders.o get_founders.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o pass_founder_genes.o pass_founder_genes.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki.o loki.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_peel.o loki_peel.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_init.o loki_init.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alloc_loki.o alloc_loki.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_sample.o loki_sample.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_pen.o loki_pen.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_tlmoves.o loki_tlmoves.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o meiosis_scan.o meiosis_scan.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_identity.o loki_identity.c
loki_init.c: In function ‘InitValues’:
loki_init.c:125:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
    tau_beta[mod]*=residual_var[mod];
    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
loki_init.c:126:4: note: here
    case 1:
    ^~~~
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_rand.o sample_rand.c
pass_founder_genes.c: In function ‘pass_founder_genes’:
pass_founder_genes.c:35:40: warning: variable ‘locus1’ set but not used [-Wunused-but-set-variable]
  int i,i1,j,s,**genes,**seg,comp,cs,nc,locus1;
                                        ^~~~~~
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_effects.o sample_effects.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_setup.o loki_setup.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_dump.o loki_dump.c
param_lex.c: In function ‘yy_get_next_buffer’:
param_lex.c:641:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   for ( n = 0; n < max_size && \
                  ^
param_lex.c:1161:3: note: in expansion of macro ‘YY_INPUT’
   YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]),
   ^~~~~~~~
At top level:
param_lex.c:1301:16: warning: ‘input’ defined but not used [-Wunused-function]
     static int input  (void)
                ^~~~~
param_lex.c:1260:17: warning: ‘yyunput’ defined but not used [-Wunused-function]
     static void yyunput (int c, register char * yy_bp )
                 ^~~~~~~
param_lex.c: In function ‘yylex’:
param_lex.l:91:11: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation]
     (void)strncpy(linebuf,yytext+1,512);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
param_lex.l:64:11: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation]
     (void)strncpy(linebuf,yytext,512);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_cens.o sample_cens.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o handle_res.o handle_res.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o print_data.o print_data.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o calc_var_locus.o calc_var_locus.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_output.o loki_output.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_nu.o sample_nu.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_complex_peel.o loki_complex_peel.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_npl.o loki_npl.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_sample.o loki_simple_sample.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_peel.o loki_simple_peel.c
loki_peel.c: In function ‘peel_locus’:
loki_peel.c:434:11: warning: ‘z’ may be used uninitialized in this function [-Wmaybe-uninitialized]
      like1+=z;
      ~~~~~^~~
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_peel.o loki_trait_simple_peel.c
loki_tlmoves.c: In function ‘sample_mpos’:
loki_tlmoves.c:152:29: warning: variable ‘idd’ set but not used [-Wunused-but-set-variable]
  int i,j,locus,k2=-1,k3,ids,idd,sx,**seg,s,s1;
                             ^~~
loki_tlmoves.c:210:26: warning: ‘x’ may be used uninitialized in this function [-Wmaybe-uninitialized]
      r=.5*(1.0-exp(.02*(x-x1)));
                        ~~^~~~
loki_tlmoves.c: In function ‘get_tl_position’:
loki_tlmoves.c:623:10: warning: ‘z’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  prior[i]+=z;
          ^~
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_sample.o loki_trait_simple_sample.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_par_probs.o get_par_probs.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_solar_idfile.o read_solar_idfile.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o peel_to_par.o peel_to_par.c
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o update_segs.o update_segs.c
gen_pen.c: In function ‘calc_degree’:
gen_pen.c:321:24: warning: variable ‘k2’ set but not used [-Wunused-but-set-variable]
  int i1,j,j1,j2,k=0,k1,k2;
                        ^~
loki_output.c: In function ‘OutputSample’:
loki_output.c:345:3: warning: this statement may fall through [-Wimplicit-fallthrough=]
   OutputSample_2(fptr,lp);
   ^~~~~~~~~~~~~~~~~~~~~~~
loki_output.c:346:3: note: here
   case OUTPUT_VERSION_2_3:
   ^~~~
loki_simple_sample.c: In function ‘loki_simple_sample’:
loki_simple_sample.c:25:51: warning: variable ‘tpp2’ set but not used [-Wunused-but-set-variable]
  double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2;
                                                   ^~~~
loki_simple_sample.c:25:45: warning: variable ‘tpp1’ set but not used [-Wunused-but-set-variable]
  double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2;
                                             ^~~~
/usr/bin/ar cr libloki.a param_parse.o param_lex.o read_binfiles.o loki_utils.o kinship.o genedrop.o mat_utils.o output_recomb.o seg_pen.o gen_pen.o loki_ibd.o get_founders.o pass_founder_genes.o
/usr/bin/ranlib libloki.a
loki_complex_peel.c: In function ‘loki_complex_peelop’:
loki_complex_peel.c:379:9: warning: variable ‘max_terms’ set but not used [-Wunused-but-set-variable]
  double max_terms,*tp,prob=0.0,z,p1,Konst=0.0;
         ^~~~~~~~~
meiosis_scan.c: In function ‘meiosis_scan’:
meiosis_scan.c:162:69: warning: variable ‘n_comp1’ set but not used [-Wunused-but-set-variable]
  int sex,kid,**seg,**seg1,kid1,nkids1,*kids1,lffg,symflag,n_qtl,qtl,n_comp1;
                                                                     ^~~~~~~
loki_simple_peel.c: In function ‘loki_simple_peelop’:
loki_simple_peel.c:601:26: warning: ‘cm[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i;
                ~~~~~~~~~~^~~~
loki_simple_peel.c:600:26: warning: ‘cm[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     id_set1[i]=(cm[X_PAT]&a1)?l:i1;
                ~~~~~~~~~~^~~~
loki_simple_peel.c: In function ‘loki_simple_peelop_x’:
loki_simple_peel.c:1278:26: warning: ‘cm[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     id_set1[i]=(cm[X_PAT]&a1)?l:i1;
                ~~~~~~~~~~^~~~
loki_simple_peel.c:1279:26: warning: ‘cm[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i;
                ~~~~~~~~~~^~~~
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now  -L. -L../libsrc -lloki -lgen -lm 
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lokisrc'
make[2]: Entering directory '/<<PKGBUILDDIR>>/utils'
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o qavg qavg.c -Wl,-z,relro -Wl,-z,now  -lm 
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o hist hist.c -Wl,-z,relro -Wl,-z,now 
make[2]: Leaving directory '/<<PKGBUILDDIR>>/utils'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_installdirs -a
   debian/rules override_dh_auto_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -a
	make -j16 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>'
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make) \
done
make[3]: Entering directory '/<<PKGBUILDDIR>>/libsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/libsrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prepsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prepsrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/lokisrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lokisrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/utils'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/utils'
for subdir in prepsrc lokisrc utils; do \
(cd $subdir; make install) \
done
make[3]: Entering directory '/<<PKGBUILDDIR>>/prepsrc'
mkdir ../bin
for file in prep; do \
/bin/cp $file /<<PKGBUILDDIR>>/debian/loki/usr/bin/; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prepsrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/lokisrc'
for file in loki; do \
/bin/cp $file /<<PKGBUILDDIR>>/debian/loki/usr/bin/; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lokisrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/utils'
for file in ext count dist freq sort_error; do \
/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /<<PKGBUILDDIR>>/debian/loki/usr/bin/loki_$file; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/loki_$file; \
done
for file in qavg hist; do \
/bin/cp $file /<<PKGBUILDDIR>>/debian/loki/usr/bin/; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/utils'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make install prefix=/<<PKGBUILDDIR>>/debian/loki/usr bindir=/<<PKGBUILDDIR>>/debian/loki/usr/bin LDFLAGS="-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
for subdir in libsrc prepsrc lokisrc utils; do \
(cd $subdir; make) \
done
make[3]: Entering directory '/<<PKGBUILDDIR>>/libsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/libsrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prepsrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prepsrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/lokisrc'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lokisrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/utils'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/utils'
for subdir in prepsrc lokisrc utils; do \
(cd $subdir; make install) \
done
make[3]: Entering directory '/<<PKGBUILDDIR>>/prepsrc'
for file in prep; do \
/bin/cp $file /<<PKGBUILDDIR>>/debian/loki/usr/bin/; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prepsrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/lokisrc'
for file in loki; do \
/bin/cp $file /<<PKGBUILDDIR>>/debian/loki/usr/bin/; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lokisrc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/utils'
for file in ext count dist freq sort_error; do \
/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /<<PKGBUILDDIR>>/debian/loki/usr/bin/loki_$file; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/loki_$file; \
done
for file in qavg hist; do \
/bin/cp $file /<<PKGBUILDDIR>>/debian/loki/usr/bin/; \
/bin/chmod 755 /<<PKGBUILDDIR>>/debian/loki/usr/bin/$file ; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/utils'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   debian/rules override_dh_installman-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman -a
for man in check_het.1 hist.1 loki_count.1 loki_dist.1 loki_ext.1 loki_freq.1 loki_sort_error.1 prep.1 qavg.1 ; do \
    ln -s loki.1.gz debian/loki/usr/share/man/man1/${man}.gz ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'loki' in '../loki_2.4.7.4-8_armhf.deb'.
dpkg-deb: building package 'loki-dbgsym' in '../loki-dbgsym_2.4.7.4-8_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../loki_2.4.7.4-8_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-03-05T12:48:16Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


loki_2.4.7.4-8_armhf.changes:
-----------------------------

Format: 1.8
Date: Fri, 12 Oct 2018 07:04:58 +0200
Source: loki
Binary: loki loki-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armhf
Version: 2.4.7.4-8
Distribution: unstable-amd64-sbuild
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 loki       - MCMC linkage analysis on general pedigrees
Changes:
 loki (2.4.7.4-8) unstable; urgency=medium
 .
   * debhelper 11
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.2.1
   * hardening=+all
   * Fix spelling
Checksums-Sha1:
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 fef9bb1f8c1f09c9e03dcbc35c15549dce013c49 4468 loki_2.4.7.4-8_armhf.buildinfo
 bb2432e5f278736c07e73a7fd2c9876b532c24b0 334976 loki_2.4.7.4-8_armhf.deb
Checksums-Sha256:
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 7452d41d9b58fe6098a85f9ed5f638fe6ffc068bba4caf9e071d372e353d5979 4468 loki_2.4.7.4-8_armhf.buildinfo
 db4ee52fc1d19e458f250f756580db4d033047dc3ea33b950c8c3e8ab9cc8271 334976 loki_2.4.7.4-8_armhf.deb
Files:
 b882a0f8c045bf000b705ab78fb99f87 769096 debug optional loki-dbgsym_2.4.7.4-8_armhf.deb
 eff8391ed9745cee8bcb70bb2fd87f15 4468 science optional loki_2.4.7.4-8_armhf.buildinfo
 153b49ffc60ee26414784ee38ecf6260 334976 science optional loki_2.4.7.4-8_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: loki
Binary: loki loki-doc
Architecture: armhf
Version: 2.4.7.4-8
Checksums-Md5:
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Tue, 05 Mar 2019 12:48:16 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.69-11),
 automake (= 1:1.16.1-4),
 autopoint (= 0.19.8.1-9),
 autotools-dev (= 20180224.1),
 base-files (= 10.1),
 base-passwd (= 3.5.46),
 bash (= 5.0-2),
 binutils (= 2.31.1-14),
 binutils-common (= 2.31.1-14),
 binutils-x86-64-linux-gnu (= 2.31.1-14),
 bsdmainutils (= 11.1.2+b1),
 bsdutils (= 1:2.33.1-0.1),
 build-essential (= 12.5),
 bzip2 (= 1.0.6-9),
 coreutils (= 8.30-2),
 cpp (= 4:8.2.0-2),
 cpp-8 (= 8.3.0-2),
 dash (= 0.5.10.2-5),
 debconf (= 1.5.71),
 debhelper (= 12.1.1),
 debianutils (= 4.8.6.1),
 dh-autoreconf (= 19),
 dh-strip-nondeterminism (= 1.1.1-1),
 diffutils (= 1:3.7-2),
 dpkg (= 1.19.5),
 dpkg-dev (= 1.19.5),
 dwz (= 0.12-3),
 fdisk (= 2.33.1-0.1),
 file (= 1:5.35-2),
 findutils (= 4.6.0+git+20190209-2),
 g++ (= 4:8.2.0-2),
 g++-8 (= 8.3.0-2),
 gcc (= 4:8.2.0-2),
 gcc-8 (= 8.3.0-2),
 gcc-8-base (= 8.3.0-2),
 gettext (= 0.19.8.1-9),
 gettext-base (= 0.19.8.1-9),
 grep (= 3.3-1),
 groff-base (= 1.22.4-2),
 gzip (= 1.9-3),
 hostname (= 3.21),
 init-system-helpers (= 1.56+nmu1),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.2.52-5),
 libarchive-zip-perl (= 1.64-1),
 libasan5 (= 8.3.0-2),
 libatomic1 (= 8.3.0-2),
 libattr1 (= 1:2.4.47-4),
 libaudit-common (= 1:2.8.4-2),
 libaudit1 (= 1:2.8.4-2),
 libbinutils (= 2.31.1-14),
 libblkid1 (= 2.33.1-0.1),
 libbsd0 (= 0.9.1-2),
 libbz2-1.0 (= 1.0.6-9),
 libc-bin (= 2.28-7),
 libc-dev-bin (= 2.28-7),
 libc6 (= 2.28-7),
 libc6-dev (= 2.28-7),
 libcap-ng0 (= 0.7.9-2),
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 libdebconfclient0 (= 0.247),
 libdpkg-perl (= 1.19.5),
 libelf1 (= 0.176-1),
 libfdisk1 (= 2.33.1-0.1),
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 libfile-stripnondeterminism-perl (= 1.1.1-1),
 libgcc-8-dev (= 8.3.0-2),
 libgcc1 (= 1:8.3.0-2),
 libgcrypt20 (= 1.8.4-5),
 libgdbm-compat4 (= 1.18.1-3),
 libgdbm6 (= 1.18.1-3),
 libglib2.0-0 (= 2.58.3-1),
 libgmp10 (= 2:6.1.2+dfsg-4),
 libgomp1 (= 8.3.0-2),
 libgpg-error0 (= 1.35-1),
 libicu63 (= 63.1-6),
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 libitm1 (= 8.3.0-2),
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 libpam-modules (= 1.3.1-5),
 libpam-modules-bin (= 1.3.1-5),
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 libpam0g (= 1.3.1-5),
 libpcre3 (= 2:8.39-11),
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 libuchardet0 (= 0.0.6-3),
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 libunistring2 (= 0.9.10-1),
 libuuid1 (= 2.33.1-0.1),
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 linux-libc-dev (= 4.19.20-1),
 login (= 1:4.5-1.1),
 m4 (= 1.4.18-2),
 make (= 4.2.1-1.2),
 man-db (= 2.8.5-2),
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 ncurses-base (= 6.1+20181013-2),
 ncurses-bin (= 6.1+20181013-2),
 patch (= 2.7.6-3),
 perl (= 5.28.1-4),
 perl-base (= 5.28.1-4),
 perl-modules-5.28 (= 5.28.1-4),
 po-debconf (= 1.0.21),
 sed (= 4.7-1),
 sensible-utils (= 0.0.12),
 sysvinit-utils (= 2.93-8),
 tar (= 1.30+dfsg-5),
 util-linux (= 2.33.1-0.1),
 xz-utils (= 5.2.4-1),
 zlib1g (= 1:1.2.11.dfsg-1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=16"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 MAKEFLAGS=" -j16"
 SOURCE_DATE_EPOCH="1539320698"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


loki-dbgsym_2.4.7.4-8_armhf.deb
-------------------------------

 new Debian package, version 2.0.
 size 769096 bytes: control archive=696 bytes.
     485 bytes,    12 lines      control              
     424 bytes,     4 lines      md5sums              
 Package: loki-dbgsym
 Source: loki
 Version: 2.4.7.4-8
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 844
 Depends: loki (= 2.4.7.4-8)
 Section: debug
 Priority: optional
 Description: debug symbols for loki
 Build-Ids: 2a83f105e2558d46772e4a280980165ac8b7c4fd 2ed813de98d8293c8fe4c86ee321392c2752a316 880cc3182ca97096981d117a07d8ff6b1bb3348b 96da601832143e7ff1b1163566db0071f1dfa685

drwxr-xr-x root/root         0 2018-10-12 05:04 ./
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/lib/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/lib/debug/.build-id/2a/
-rw-r--r-- root/root    318424 2018-10-12 05:04 ./usr/lib/debug/.build-id/2a/83f105e2558d46772e4a280980165ac8b7c4fd.debug
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/lib/debug/.build-id/2e/
-rw-r--r-- root/root     11856 2018-10-12 05:04 ./usr/lib/debug/.build-id/2e/d813de98d8293c8fe4c86ee321392c2752a316.debug
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/lib/debug/.build-id/88/
-rw-r--r-- root/root    506604 2018-10-12 05:04 ./usr/lib/debug/.build-id/88/0cc3182ca97096981d117a07d8ff6b1bb3348b.debug
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/lib/debug/.build-id/96/
-rw-r--r-- root/root     12548 2018-10-12 05:04 ./usr/lib/debug/.build-id/96/da601832143e7ff1b1163566db0071f1dfa685.debug
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/share/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/doc/loki-dbgsym -> loki


loki_2.4.7.4-8_armhf.deb
------------------------

 new Debian package, version 2.0.
 size 334976 bytes: control archive=1212 bytes.
     665 bytes,    15 lines      control              
    1071 bytes,    18 lines      md5sums              
 Package: loki
 Version: 2.4.7.4-8
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 634
 Depends: libc6 (>= 2.27)
 Suggests: loki-doc
 Section: science
 Priority: optional
 Description: MCMC linkage analysis on general pedigrees
  Performs Markov chain Monte Carlo multipoint linkage analysis on large,
  complex pedigrees.  The current package supports analyses on quantitative
  traits only, although this restriction will be lifted in later versions.
  Joint estimation of QTL number, position and effects uses Reversible Jump
  MCMC. It is also possible to perform affected only IBD sharing analyses.

drwxr-xr-x root/root         0 2018-10-12 05:04 ./
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/bin/
-rwxr-xr-x root/root      9636 2018-10-12 05:04 ./usr/bin/hist
-rwxr-xr-x root/root    355184 2018-10-12 05:04 ./usr/bin/loki
-rwxr-xr-x root/root      8539 2018-10-12 05:04 ./usr/bin/loki_count
-rwxr-xr-x root/root      8426 2018-10-12 05:04 ./usr/bin/loki_dist
-rwxr-xr-x root/root      9834 2018-10-12 05:04 ./usr/bin/loki_ext
-rwxr-xr-x root/root      3471 2018-10-12 05:04 ./usr/bin/loki_freq
-rwxr-xr-x root/root      1442 2018-10-12 05:04 ./usr/bin/loki_sort_error
-rwxr-xr-x root/root    202440 2018-10-12 05:04 ./usr/bin/prep
-rwxr-xr-x root/root      9636 2018-10-12 05:04 ./usr/bin/qavg
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/share/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/share/doc/loki/
-rw-r--r-- root/root      1990 2003-04-15 11:49 ./usr/share/doc/loki/README
-rw-r--r-- root/root       894 2018-10-12 05:04 ./usr/share/doc/loki/README.Debian
-rw-r--r-- root/root       471 2002-04-15 14:06 ./usr/share/doc/loki/README.known_systems
-rw-r--r-- root/root       580 2002-07-11 15:06 ./usr/share/doc/loki/README.multiple_records
-rw-r--r-- root/root      1910 2002-07-11 15:06 ./usr/share/doc/loki/README.parallel_runs
-rw-r--r-- root/root      1912 2018-10-12 05:04 ./usr/share/doc/loki/changelog.Debian.gz
-rw-r--r-- root/root      5084 2004-06-04 09:36 ./usr/share/doc/loki/changelog.gz
-rw-r--r-- root/root      1943 2018-10-12 05:04 ./usr/share/doc/loki/copyright
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/share/man/
drwxr-xr-x root/root         0 2018-10-12 05:04 ./usr/share/man/man1/
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/check_het.1.gz -> loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/hist.1.gz -> loki.1.gz
-rw-r--r-- root/root      1005 2018-10-12 05:04 ./usr/share/man/man1/loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/loki_count.1.gz -> loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/loki_dist.1.gz -> loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/loki_ext.1.gz -> loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/loki_freq.1.gz -> loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/loki_sort_error.1.gz -> loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/prep.1.gz -> loki.1.gz
lrwxrwxrwx root/root         0 2018-10-12 05:04 ./usr/share/man/man1/qavg.1.gz -> loki.1.gz


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
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The following packages were automatically installed and are no longer required:
  libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  diffstat libapt-pkg-perl libcapture-tiny-perl libcgi-pm-perl
  libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl
  libexporter-tiny-perl libfile-basedir-perl libfuture-perl libio-async-perl
  libio-pty-perl libipc-run-perl libipc-system-simple-perl
  liblist-moreutils-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl
  libparse-debianchangelog-perl libpath-tiny-perl libstruct-dumb-perl
  libsub-name-perl libtext-levenshtein-perl lintian patchutils t1utils
Suggested packages:
  libhtml-template-perl binutils-multiarch libtext-template-perl
Recommended packages:
  libcgi-fast-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl
  libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl
  libnet-libidn-perl libunicode-utf8-perl libperlio-gzip-perl
The following NEW packages will be installed:
  diffstat libapt-pkg-perl libcapture-tiny-perl libcgi-pm-perl
  libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl
  libexporter-tiny-perl libfile-basedir-perl libfuture-perl libio-async-perl
  libio-pty-perl libipc-run-perl libipc-system-simple-perl
  liblist-moreutils-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl
  libparse-debianchangelog-perl libpath-tiny-perl libstruct-dumb-perl
  libsub-name-perl libtext-levenshtein-perl lintian patchutils
  sbuild-build-depends-lintian-dummy:armhf t1utils
0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded.
Need to get 2847 kB/2971 kB of archives.
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Get:6 http://10.116.41.102/debian sid/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB]
Get:7 http://10.116.41.102/debian sid/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB]
Get:8 http://10.116.41.102/debian sid/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB]
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Get:13 http://10.116.41.102/debian sid/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:14 http://10.116.41.102/debian sid/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB]
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Get:16 http://10.116.41.102/debian sid/main amd64 libfuture-perl all 0.39-1 [74.5 kB]
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Get:18 http://10.116.41.102/debian sid/main amd64 libio-async-perl all 0.72-1 [262 kB]
Get:19 http://10.116.41.102/debian sid/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB]
Get:20 http://10.116.41.102/debian sid/main amd64 libipc-run-perl all 20180523.0-1 [101 kB]
Get:21 http://10.116.41.102/debian sid/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB]
Get:22 http://10.116.41.102/debian sid/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB]
Get:23 http://10.116.41.102/debian sid/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB]
Get:24 http://10.116.41.102/debian sid/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB]
Get:25 http://10.116.41.102/debian sid/main amd64 t1utils amd64 1.41-3 [62.3 kB]
Get:26 http://10.116.41.102/debian sid/main amd64 lintian all 2.9.1 [1193 kB]
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Preparing to unpack .../17-libio-async-perl_0.72-1_all.deb ...
Unpacking libio-async-perl (0.72-1) ...
Selecting previously unselected package libio-pty-perl.
Preparing to unpack .../18-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ...
Unpacking libio-pty-perl (1:1.08-1.1+b5) ...
Selecting previously unselected package libipc-run-perl.
Preparing to unpack .../19-libipc-run-perl_20180523.0-1_all.deb ...
Unpacking libipc-run-perl (20180523.0-1) ...
Selecting previously unselected package liblist-moreutils-perl.
Preparing to unpack .../20-liblist-moreutils-perl_0.416-1+b4_amd64.deb ...
Unpacking liblist-moreutils-perl (0.416-1+b4) ...
Selecting previously unselected package libparse-debianchangelog-perl.
Preparing to unpack .../21-libparse-debianchangelog-perl_1.2.0-13_all.deb ...
Unpacking libparse-debianchangelog-perl (1.2.0-13) ...
Selecting previously unselected package libpath-tiny-perl.
Preparing to unpack .../22-libpath-tiny-perl_0.108-1_all.deb ...
Unpacking libpath-tiny-perl (0.108-1) ...
Selecting previously unselected package libtext-levenshtein-perl.
Preparing to unpack .../23-libtext-levenshtein-perl_0.13-1_all.deb ...
Unpacking libtext-levenshtein-perl (0.13-1) ...
Selecting previously unselected package patchutils.
Preparing to unpack .../24-patchutils_0.3.4-2_amd64.deb ...
Unpacking patchutils (0.3.4-2) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../25-t1utils_1.41-3_amd64.deb ...
Unpacking t1utils (1.41-3) ...
Selecting previously unselected package lintian.
Preparing to unpack .../26-lintian_2.9.1_all.deb ...
Unpacking lintian (2.9.1) ...
Selecting previously unselected package sbuild-build-depends-lintian-dummy:armhf.
Preparing to unpack .../27-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Setting up libapt-pkg-perl (0.1.34+b1) ...
Setting up libstruct-dumb-perl (0.09-1) ...
Setting up libio-pty-perl (1:1.08-1.1+b5) ...
Setting up libclone-perl (0.41-1+b1) ...
Setting up libfuture-perl (0.39-1) ...
Setting up libcgi-pm-perl (4.40-1) ...
Setting up libtext-levenshtein-perl (0.13-1) ...
Setting up libio-async-perl (0.72-1) ...
Setting up patchutils (0.3.4-2) ...
Setting up libdigest-hmac-perl (1.03+dfsg-2) ...
Setting up libipc-system-simple-perl (1.25-4) ...
Setting up libnet-domain-tld-perl (1.75-1) ...
Setting up t1utils (1.41-3) ...
Setting up diffstat (1.62-1) ...
Setting up libipc-run-perl (20180523.0-1) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libsub-name-perl (0.21-1+b3) ...
Setting up libpath-tiny-perl (0.108-1) ...
Setting up libexporter-tiny-perl (1.002001-1) ...
Setting up libclass-accessor-perl (0.51-1) ...
Setting up libnet-ip-perl (1.26-2) ...
Setting up libfile-basedir-perl (0.08-1) ...
Setting up liblist-moreutils-perl (0.416-1+b4) ...
Setting up libnet-dns-perl (1.19-1) ...
Setting up libparse-debianchangelog-perl (1.2.0-13) ...
Setting up libemail-valid-perl (1.202-1) ...
Setting up lintian (2.9.1) ...
Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Processing triggers for man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl uuid-runtime
Use 'apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl libmailtools-perl
  libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime
Use 'apt autoremove' to remove them.
The following packages will be REMOVED:
  autoconf* automake* autopoint* autotools-dev* bsdmainutils* debhelper*
  dh-autoreconf* dh-strip-nondeterminism* diffstat* dwz* gcc-8-base:armhf*
  gettext* gettext-base* groff-base* intltool-debian* libapt-pkg-perl*
  libarchive-zip-perl* libasan5:armhf* libatomic1:armhf* libbsd0* libc6:armhf*
  libc6-dev:armhf* libcapture-tiny-perl* libcgi-pm-perl*
  libclass-accessor-perl* libclone-perl* libcroco3* libdigest-hmac-perl*
  libelf1* libemail-valid-perl* libexporter-tiny-perl* libfile-basedir-perl*
  libfile-stripnondeterminism-perl* libfuture-perl* libgcc-8-dev:armhf*
  libgcc1:armhf* libglib2.0-0* libgomp1:armhf* libio-async-perl*
  libio-pty-perl* libipc-run-perl* libipc-system-simple-perl*
  liblist-moreutils-perl* libncurses6* libnet-dns-perl*
  libnet-domain-tld-perl* libnet-ip-perl* libparse-debianchangelog-perl*
  libpath-tiny-perl* libpipeline1* libsigsegv2* libstdc++-8-dev:armhf*
  libstdc++6:armhf* libstruct-dumb-perl* libsub-name-perl*
  libtext-levenshtein-perl* libtool* libubsan1:armhf* libuchardet0* lintian*
  linux-libc-dev:armhf* m4* man-db* patchutils* po-debconf*
  sbuild-build-depends-lintian-dummy:armhf*
  sbuild-build-depends-main-dummy:armhf* t1utils*
0 upgraded, 0 newly installed, 68 to remove and 0 not upgraded.
After this operation, 88.5 MB disk space will be freed.
(Reading database ... 20428 files and directories currently installed.)
Removing sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...
Removing sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Removing lintian (2.9.1) ...
Removing diffstat (1.62-1) ...
Removing libstdc++-8-dev:armhf (8.3.0-2) ...
Removing libgcc-8-dev:armhf (8.3.0-2) ...
Removing libubsan1:armhf (8.3.0-2) ...
Removing libasan5:armhf (8.3.0-2) ...
Removing libstdc++6:armhf (8.3.0-2) ...
Removing libapt-pkg-perl (0.1.34+b1) ...
Removing libatomic1:armhf (8.3.0-2) ...
Removing libc6-dev:armhf (2.28-7) ...
Removing libgomp1:armhf (8.3.0-2) ...
Removing libcapture-tiny-perl (0.48-1) ...
Removing libparse-debianchangelog-perl (1.2.0-13) ...
Removing libcgi-pm-perl (4.40-1) ...
Removing libclass-accessor-perl (0.51-1) ...
Removing libclone-perl (0.41-1+b1) ...
Removing libemail-valid-perl (1.202-1) ...
Removing libnet-dns-perl (1.19-1) ...
Removing libdigest-hmac-perl (1.03+dfsg-2) ...
Removing liblist-moreutils-perl (0.416-1+b4) ...
Removing libexporter-tiny-perl (1.002001-1) ...
Removing libfile-basedir-perl (0.08-1) ...
Removing libio-async-perl (0.72-1) ...
Removing libfuture-perl (0.39-1) ...
Removing libipc-run-perl (20180523.0-1) ...
Removing libio-pty-perl (1:1.08-1.1+b5) ...
Removing libipc-system-simple-perl (1.25-4) ...
Removing libnet-domain-tld-perl (1.75-1) ...
Removing libnet-ip-perl (1.26-2) ...
Removing libpath-tiny-perl (0.108-1) ...
Removing libstruct-dumb-perl (0.09-1) ...
Removing libsub-name-perl (0.21-1+b3) ...
Removing libtext-levenshtein-perl (0.13-1) ...
Removing linux-libc-dev:armhf (4.19.20-1) ...
Removing patchutils (0.3.4-2) ...
Removing t1utils (1.41-3) ...
Removing libgcc1:armhf (1:8.3.0-2) ...
Removing debhelper (12.1.1) ...
Removing dh-strip-nondeterminism (1.1.1-1) ...
Removing man-db (2.8.5-2) ...
Removing bsdmainutils (11.1.2+b1) ...
Removing dwz (0.12-3) ...
Removing gcc-8-base:armhf (8.3.0-2) ...
Removing po-debconf (1.0.21) ...
Removing intltool-debian (0.35.0+20060710.5) ...
Removing gettext (0.19.8.1-9) ...
Removing gettext-base (0.19.8.1-9) ...
Removing groff-base (1.22.4-2) ...
Removing libfile-stripnondeterminism-perl (1.1.1-1) ...
Removing libarchive-zip-perl (1.64-1) ...
Removing libbsd0:amd64 (0.9.1-2) ...
Removing libc6:armhf (2.28-7) ...
Removing libcroco3:amd64 (0.6.12-3) ...
Removing libelf1:amd64 (0.176-1) ...
Removing libglib2.0-0:amd64 (2.58.3-1) ...
Removing libncurses6:amd64 (6.1+20181013-2) ...
Removing libpipeline1:amd64 (1.5.1-2) ...
Removing libuchardet0:amd64 (0.0.6-3) ...
Removing dh-autoreconf (19) ...
Removing automake (1:1.16.1-4) ...
Removing autoconf (2.69-11) ...
Removing autopoint (0.19.8.1-9) ...
Removing libtool (2.4.6-10) ...
Removing autotools-dev (20180224.1) ...
Removing m4 (1.4.18-2) ...
Removing libsigsegv2:amd64 (2.12-2) ...
Processing triggers for ccache (3.6-1) ...
Updating symlinks in /usr/lib/ccache ...
Processing triggers for libc-bin (2.28-7) ...
(Reading database ... 16458 files and directories currently installed.)
Purging configuration files for libglib2.0-0:amd64 (2.58.3-1) ...
Purging configuration files for lintian (2.9.1) ...
Purging configuration files for man-db (2.8.5-2) ...
Purging configuration files for bsdmainutils (11.1.2+b1) ...
Purging configuration files for autoconf (2.69-11) ...
Purging configuration files for libc6:armhf (2.28-7) ...
Purging configuration files for groff-base (1.22.4-2) ...

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 24
Distribution: unstable-amd64-sbuild
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 6
Job: /home/build/sbuild-setup/repo/pool/main/l/loki/loki_2.4.7.4-8.dsc
Lintian: pass
Machine Architecture: amd64
Package: loki
Package-Time: 34
Source-Version: 2.4.7.4-8
Space: n/a
Status: successful
Version: 2.4.7.4-8
--------------------------------------------------------------------------------
Finished at 2019-03-05T12:48:16Z
Build needed 00:00:34, no disk space