sbuild (Debian sbuild) 0.78.1 (09 February 2019) on 36857dea695f +==============================================================================+ | rnahybrid 2.1.2-5 (armhf) Wed, 06 Mar 2019 21:18:42 +0000 | +==============================================================================+ Package: rnahybrid Version: 2.1.2-5 Source Version: 2.1.2-5 Distribution: unstable-amd64-sbuild Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1854e640-eaea-4dd6-a1ae-d0e373b29e9f' with '<>' I: NOTICE: Log filtering will replace 'build/rnahybrid-svjitt/resolver-Jgoe5K' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://cdn-fastly.deb.debian.org/debian sid InRelease [242 kB] Get:2 http://cdn-fastly.deb.debian.org/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://cdn-fastly.deb.debian.org/debian sid/main armhf Packages.diff/Index [27.9 kB] Get:5 http://cdn-fastly.deb.debian.org/debian sid/main Sources 2019-03-06-2011.26.pdiff [2696 B] Get:5 http://cdn-fastly.deb.debian.org/debian sid/main Sources 2019-03-06-2011.26.pdiff [2696 B] Get:6 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages 2019-03-06-2011.26.pdiff [2451 B] Get:6 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages 2019-03-06-2011.26.pdiff [2451 B] Get:7 http://cdn-fastly.deb.debian.org/debian sid/main armhf Packages 2019-03-06-2011.26.pdiff [2446 B] Get:7 http://cdn-fastly.deb.debian.org/debian sid/main armhf Packages 2019-03-06-2011.26.pdiff [2446 B] Fetched 333 kB in 5s (64.7 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime Use 'apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /home/build/sbuild-setup/repo/pool/main/r/rnahybrid/rnahybrid_2.1.2-5.dsc exists in /home/build/sbuild-setup/repo/pool/main/r/rnahybrid; copying to chroot I: NOTICE: Log filtering will replace 'build/rnahybrid-svjitt/rnahybrid-2.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/rnahybrid-svjitt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libg2-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper (>= 11~), libg2-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [398 B] Get:5 copy:/<>/apt_archive ./ Packages [492 B] Fetched 1847 B in 0s (126 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig-config fonts-dejavu-core gcc-8-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-dev:armhf libcroco3 libelf1 libexpat1:armhf libfile-stripnondeterminism-perl libfontconfig1:armhf libfreetype6:armhf libg2-dev:armhf libg20:armhf libgcc-8-dev:armhf libgcc1:armhf libgd3:armhf libglib2.0-0 libgomp1:armhf libjbig0:armhf libjpeg62-turbo:armhf liblzma5:armhf libncurses6 libpipeline1 libpng16-16:armhf libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libtiff5:armhf libtool libubsan1:armhf libuchardet0 libuuid1:armhf libwebp6:armhf libx11-6:armhf libx11-data libxau6:armhf libxcb1:armhf libxdmcp6:armhf libxpm4:armhf libzstd1:armhf linux-libc-dev:armhf m4 man-db po-debconf zlib1g:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf libgd-tools:armhf libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig-config fonts-dejavu-core gcc-8-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-dev:armhf libcroco3 libelf1 libexpat1:armhf libfile-stripnondeterminism-perl libfontconfig1:armhf libfreetype6:armhf libg2-dev:armhf libg20:armhf libgcc-8-dev:armhf libgcc1:armhf libgd3:armhf libglib2.0-0 libgomp1:armhf libjbig0:armhf libjpeg62-turbo:armhf liblzma5:armhf libncurses6 libpipeline1 libpng16-16:armhf libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libtiff5:armhf libtool libubsan1:armhf libuchardet0 libuuid1:armhf libwebp6:armhf libx11-6:armhf libx11-data libxau6:armhf libxcb1:armhf libxdmcp6:armhf libxpm4:armhf libzstd1:armhf linux-libc-dev:armhf m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf zlib1g:armhf 0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 224 kB/23.7 MB of archives. After this operation, 90.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [908 B] Get:2 http://cdn-fastly.deb.debian.org/debian sid/main armhf libg20 armhf 0.72-8+b1 [35.4 kB] Get:3 http://cdn-fastly.deb.debian.org/debian sid/main armhf libg2-dev armhf 0.72-8+b1 [187 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 224 kB in 2s (113 kB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 16441 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../27-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../28-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package gcc-8-base:armhf. Preparing to unpack .../29-gcc-8-base_8.3.0-2_armhf.deb ... Unpacking gcc-8-base:armhf (8.3.0-2) ... Selecting previously unselected package libgcc1:armhf. Preparing to unpack .../30-libgcc1_1%3a8.3.0-2_armhf.deb ... Unpacking libgcc1:armhf (1:8.3.0-2) ... Selecting previously unselected package libc6:armhf. Preparing to unpack .../31-libc6_2.28-8_armhf.deb ... Unpacking libc6:armhf (2.28-8) ... Selecting previously unselected package libstdc++6:armhf. Preparing to unpack .../32-libstdc++6_8.3.0-2_armhf.deb ... Unpacking libstdc++6:armhf (8.3.0-2) ... Selecting previously unselected package libasan5:armhf. Preparing to unpack .../33-libasan5_8.3.0-2_armhf.deb ... Unpacking libasan5:armhf (8.3.0-2) ... Selecting previously unselected package libatomic1:armhf. Preparing to unpack .../34-libatomic1_8.3.0-2_armhf.deb ... Unpacking libatomic1:armhf (8.3.0-2) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../35-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package linux-libc-dev:armhf. Preparing to unpack .../36-linux-libc-dev_4.19.20-1_armhf.deb ... Unpacking linux-libc-dev:armhf (4.19.20-1) ... Selecting previously unselected package libc6-dev:armhf. Preparing to unpack .../37-libc6-dev_2.28-8_armhf.deb ... Unpacking libc6-dev:armhf (2.28-8) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../38-libexpat1_2.2.6-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-1) ... Selecting previously unselected package zlib1g:armhf. Preparing to unpack .../39-zlib1g_1%3a1.2.11.dfsg-1_armhf.deb ... Unpacking zlib1g:armhf (1:1.2.11.dfsg-1) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../40-libpng16-16_1.6.36-5_armhf.deb ... Unpacking libpng16-16:armhf (1.6.36-5) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../41-libfreetype6_2.9.1-3_armhf.deb ... Unpacking libfreetype6:armhf (2.9.1-3) ... Selecting previously unselected package libuuid1:armhf. Preparing to unpack .../42-libuuid1_2.33.1-0.1_armhf.deb ... Unpacking libuuid1:armhf (2.33.1-0.1) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../43-libfontconfig1_2.13.1-2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../44-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../45-libjbig0_2.1-3.1+b2_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1+b2) ... Selecting previously unselected package liblzma5:armhf. Preparing to unpack .../46-liblzma5_5.2.4-1_armhf.deb ... Unpacking liblzma5:armhf (5.2.4-1) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../47-libwebp6_0.6.1-2_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2) ... Selecting previously unselected package libzstd1:armhf. Preparing to unpack .../48-libzstd1_1.3.8+dfsg-3_armhf.deb ... Unpacking libzstd1:armhf (1.3.8+dfsg-3) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../49-libtiff5_4.0.10-4_armhf.deb ... Unpacking libtiff5:armhf (4.0.10-4) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../50-libxau6_1%3a1.0.8-1+b2_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../51-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../52-libxcb1_1.13.1-2_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../53-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../54-libx11-6_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.7-1) ... Selecting previously unselected package libxpm4:armhf. Preparing to unpack .../55-libxpm4_1%3a3.5.12-1_armhf.deb ... Unpacking libxpm4:armhf (1:3.5.12-1) ... Selecting previously unselected package libgd3:armhf. Preparing to unpack .../56-libgd3_2.2.5-5.1_armhf.deb ... Unpacking libgd3:armhf (2.2.5-5.1) ... Selecting previously unselected package libg20:armhf. Preparing to unpack .../57-libg20_0.72-8+b1_armhf.deb ... Unpacking libg20:armhf (0.72-8+b1) ... Selecting previously unselected package libg2-dev:armhf. Preparing to unpack .../58-libg2-dev_0.72-8+b1_armhf.deb ... Unpacking libg2-dev:armhf (0.72-8+b1) ... Selecting previously unselected package libgomp1:armhf. Preparing to unpack .../59-libgomp1_8.3.0-2_armhf.deb ... Unpacking libgomp1:armhf (8.3.0-2) ... Selecting previously unselected package libubsan1:armhf. Preparing to unpack .../60-libubsan1_8.3.0-2_armhf.deb ... Unpacking libubsan1:armhf (8.3.0-2) ... Selecting previously unselected package libgcc-8-dev:armhf. Preparing to unpack .../61-libgcc-8-dev_8.3.0-2_armhf.deb ... Unpacking libgcc-8-dev:armhf (8.3.0-2) ... Selecting previously unselected package libstdc++-8-dev:armhf. Preparing to unpack .../62-libstdc++-8-dev_8.3.0-2_armhf.deb ... Unpacking libstdc++-8-dev:armhf (8.3.0-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armhf. Preparing to unpack .../63-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:armhf (4.19.20-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armhf (8.3.0-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up fontconfig-config (2.13.1-2) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armhf (2.28-8) ... Setting up libc6-dev:armhf (2.28-8) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libzstd1:armhf (1.3.8+dfsg-3) ... Setting up libxau6:armhf (1:1.0.8-1+b2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up liblzma5:armhf (5.2.4-1) ... Setting up libgcc1:armhf (1:8.3.0-2) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1) ... Setting up libgomp1:armhf (8.3.0-2) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up dh-autoreconf (19) ... Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Setting up libpng16-16:armhf (1.6.36-5) ... Setting up libatomic1:armhf (8.3.0-2) ... Setting up libuuid1:armhf (2.33.1-0.1) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up dh-strip-nondeterminism (1.1.1-1) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libtiff5:armhf (4.0.10-4) ... Setting up libstdc++6:armhf (8.3.0-2) ... Setting up libexpat1:armhf (2.2.6-1) ... Setting up libxpm4:armhf (1:3.5.12-1) ... Setting up debhelper (12.1.1) ... Setting up libasan5:armhf (8.3.0-2) ... Setting up libfreetype6:armhf (2.9.1-3) ... Setting up libubsan1:armhf (8.3.0-2) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up libgd3:armhf (2.2.5-5.1) ... Setting up libgcc-8-dev:armhf (8.3.0-2) ... Setting up libstdc++-8-dev:armhf (8.3.0-2) ... Setting up libg20:armhf (0.72-8+b1) ... Setting up libg2-dev:armhf (0.72-8+b1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... Processing triggers for ccache (3.6-1) ... Updating symlinks in /usr/lib/ccache ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Initial Foreign Architectures: armhf Arch check ok (armhf included in any-amd64 any-i386 arm64 armhf mips mips64el mipsel ppc64el s390x alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-4-amd64 #1 SMP Debian 3.16.51-3 (2017-12-13) amd64 (x86_64) Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-2 gcc-8_8.3.0-2 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-armhf-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-armhf-cross_8.3.0-2cross1 linux-libc-dev_4.19.20-1 Package versions: adduser_3.118 apt_1.8.0~rc4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-arm-linux-gnueabihf_2.31.1-15 binutils-common_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 ca-certificates_20190110 ccache_3.6-1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-2 cpp-8-arm-linux-gnueabihf_8.3.0-2cross1 cpp-arm-linux-gnueabihf_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-armhf_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.7-2 dirmngr_2.2.13-1 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.44.6-1 eatmydata_105-7 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1 g++-8_8.3.0-2 g++-8-arm-linux-gnueabihf_8.3.0-2cross1 g++-arm-linux-gnueabihf_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-2 gcc-8-arm-linux-gnueabihf_8.3.0-2cross1 gcc-8-arm-linux-gnueabihf-base_8.3.0-2cross1 gcc-8-base_8.3.0-2 gcc-8-cross-base_8.3.0-2cross1 gcc-arm-linux-gnueabihf_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.13-1 gnupg-l10n_2.2.13-1 gnupg-utils_2.2.13-1 gpg_2.2.13-1 gpg-agent_2.2.13-1 gpg-wks-client_2.2.13-1 gpg-wks-server_2.2.13-1 gpgconf_2.2.13-1 gpgsm_2.2.13-1 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0~rc4 libarchive-zip-perl_1.64-1 libasan5_8.3.0-2 libasan5-armhf-cross_8.3.0-2cross1 libassuan0_2.5.2-1 libatomic1_8.3.0-2 libatomic1-armhf-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libauthen-sasl-perl_2.1600-1 libbinutils_2.31.1-15 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-armhf-cross_2.28-7cross1 libc6-dev_2.28-8 libc6-dev-armhf-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-2 libcom-err2_1.44.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdata-dump-perl_1.23-1 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libeatmydata1_105-7 libelf1_0.176-1 libencode-locale-perl_1.05-1 libexpat1_2.2.6-1 libext2fs2_1.44.6-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.1.1-1 libfile-which-perl_1.23-1 libfont-afm-perl_1.20-2 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3 libg2-dev_0.72-8+b1 libg20_0.72-8+b1 libgcc-8-dev_8.3.0-2 libgcc-8-dev-armhf-cross_8.3.0-2cross1 libgcc1_1:8.3.0-2 libgcc1-armhf-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgd3_2.2.5-5.1 libgdbm-compat4_1.18.1-3 libgdbm6_1.18.1-3 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.3.0-2 libgomp1-armhf-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libhtml-form-perl_6.03-1 libhtml-format-perl_2.12-1 libhtml-parser-perl_3.72-3+b3 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.04-1 libhttp-daemon-perl_6.01-3 libhttp-date-perl_6.02-1 libhttp-message-perl_6.18-1 libhttp-negotiate-perl_6.01-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.060-3 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-2 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmailtools-perl_2.18-1 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-2 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnet-http-perl_6.18-1 libnet-smtp-ssl-perl_1.04-1 libnet-ssleay-perl_1.85-2+b1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libpng16-16_1.6.36-5 libquadmath0_8.3.0-2 libreadline7_7.0-5 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-1 libss2_1.44.6-1 libssl1.1_1.1.1b-1 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-armhf-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-armhf-cross_8.3.0-2cross1 libsystemd0_241-1 libtasn1-6_4.13-3 libtiff5_4.0.10-4 libtimedate-perl_2.3000-2 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtry-tiny-perl_0.30-1 libtsan0_8.3.0-2 libubsan1_8.3.0-2 libubsan1-armhf-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-1 libunistring2_0.9.10-1 liburi-perl_1.76-1 libuuid1_2.33.1-0.1 libwebp6_0.6.1-2 libwww-perl_6.36-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-parser-perl_2.44-4 libxml-sax-base-perl_1.09-1 libxml-sax-expat-perl_0.51-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libxpm4_1:3.5.12-1 libyaml-0-2_0.2.1-1 libyaml-libyaml-perl_0.76+repack-1 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.20-1 linux-libc-dev-armhf-cross_4.19.20-1cross1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 openssl_1.1.1b-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 perl-openssl-defaults_3 pinentry-curses_1.1.0-1+b1 po-debconf_1.0.21 readline-common_7.0-5 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 uuid-runtime_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: rnahybrid Binary: rnahybrid Architecture: any-amd64 any-i386 arm64 armhf mips mips64el mipsel ppc64el s390x alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 Version: 2.1.2-5 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/rnahybrid Vcs-Git: https://salsa.debian.org/med-team/rnahybrid.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libg2-dev Package-List: rnahybrid deb science optional arch=any-amd64,arm64,armhf,any-i386,mips,mips64el,mipsel,ppc64el,s390x,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: a5039de03c2b8d356e5d0c549613846d30934852 181984 rnahybrid_2.1.2.orig.tar.gz 97320f7ab646a29c68fa6ae8532da3b4119e23fc 6524 rnahybrid_2.1.2-5.debian.tar.xz Checksums-Sha256: e2bbbca714441f709732412a1a130e4911e212419af5b09154ddfaf0148d6e96 181984 rnahybrid_2.1.2.orig.tar.gz fdfd13bd425e16854d9103e82d889d2b1df2f8c240a86552098b65f8d04f969c 6524 rnahybrid_2.1.2-5.debian.tar.xz Files: 240f613f3fcc2f563f38804a54f07c89 181984 rnahybrid_2.1.2.orig.tar.gz 36de25870dffcf3dfb5999611bc5017e 6524 rnahybrid_2.1.2-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvYM4gRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEJJw//W7LWnD/Raojo7uyMXxFsZGv2fvGGqvWd k7kM5eF0HDLuUx+Q/IRwQjecKzdxcwl8f8jAT30K9fdaPPNX69fwca4VMphD2+oD CCheA+PTwL4SiFKi2K34yi/infh7tT8Ic9t+vdsGgTPsEi9ZsE+mMGu+/yMUYdT8 2DIxCUYeuyg5/myB5An0x4relbLuXzX8jvpPOHbiUyfcEyG0Cg2Q0jtu6+d0gnhN CKQYnXf/xlMTbVy5NQDo5YqV9WspCsdnMLgcDPX56Yfs2yum7l+I5gqVcSvTVtLi PB26vYS72bpz0SpkMkCXrVb0REPPOLCIPkTfbMXXRkNqqP+XfifFCjgqhYtIfsLP sHOIoNoaeVqlMP8xhQNAwnR8Qe6BBk9uBGz+jH1fhPI4SjggSTSshGu/xuGS+a15 SO1xPs+onIS9ZcG1Ia1Rd/hNe2d6zeNpOIX6feEhx8h4DvYXIbd849LPnVgB7LZ8 /v4z6tPMoRsx459I9owB+Ne7MRFqlheFbj/QjrUHMSbQv6PT86VndxycomQgqUY6 vShPUygqZ8EXd3Jj318m3z7fMrBLtni+kzo3/L4ogx8GwanT9Ph5HjIVdAzHEtVW Q+OWNIhnmD5+rZpROHtXzisCsWbDLJhtk2l590yswRNJugTFQuxwRzHBdXuls8KL lTyhExu3eG0= =1mh/ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 30 10:33:44 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rnahybrid_2.1.2-5.dsc dpkg-source: info: extracting rnahybrid in /<> dpkg-source: info: unpacking rnahybrid_2.1.2.orig.tar.gz dpkg-source: info: unpacking rnahybrid_2.1.2-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fixmanpage.patch dpkg-source: info: applying mayhem_check_if_file_exists.patch dpkg-source: info: applying fix_loop_index.patch dpkg-source: info: applying fix_warnings.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CCACHE_COMPRESS=1 CCACHE_DIR=/var/cache/ccache-sbuild CCACHE_UMASK=002 CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=build PATH=/usr/lib/ccache:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=build SCHROOT_SESSION_ID=unstable-amd64-sbuild-1854e640-eaea-4dd6-a1ae-d0e373b29e9f SCHROOT_UID=1000 SCHROOT_USER=build SHELL=/bin/sh USER=build dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot -j16 dpkg-buildpackage: info: source package rnahybrid dpkg-buildpackage: info: source version 2.1.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:12: installing './compile' src/Makefile.am:62: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabihf-gcc... none checking for log in -lm... yes checking for g2_open_vd in -lg2... yes checking for gdImageLine in -lgd... no checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking g2.h usability... yes checking g2.h presence... yes checking for g2.h... yes checking g2_PS.h usability... yes checking g2_PS.h presence... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j16 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnahybrid.o rnahybrid.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hybrid_core.o hybrid_core.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o energy.o energy.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o input.o input.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta.o fasta.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o plot.o plot.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnacalibrate.o rnacalibrate.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o numerical.o numerical.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o random.o random.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-1.o mt19937-1.c arm-linux-gnueabihf-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnaeffective.o rnaeffective.c random.c: In function ‘random_sequence’: random.c:75:29: warning: implicit declaration of function ‘calloc’ [-Wimplicit-function-declaration] char *sequence = (char *) calloc(seqlen+1,sizeof(char)); ^~~~~~ random.c:75:29: warning: incompatible implicit declaration of built-in function ‘calloc’ random.c:75:29: note: include ‘’ or provide a declaration of ‘calloc’ random.c:17:1: +#include random.c:75:29: char *sequence = (char *) calloc(seqlen+1,sizeof(char)); ^~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o RNAhybrid rnahybrid.o hybrid_core.o energy.o input.o fasta.o plot.o -lg2 -lm arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o RNAeffective rnaeffective.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o RNAcalibrate rnacalibrate.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm make[3]: Leaving directory '/<>/src' Making all in man make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/man' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j16 install DESTDIR=/<>/debian/rnahybrid AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/rnahybrid/usr/bin' /usr/bin/install -c RNAhybrid RNAcalibrate RNAeffective '/<>/debian/rnahybrid/usr/bin' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/rnahybrid/usr/share/man/man1' /usr/bin/install -c -m 644 RNAhybrid.1 RNAcalibrate.1 RNAeffective.1 '/<>/debian/rnahybrid/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'rnahybrid' in '../rnahybrid_2.1.2-5_armhf.deb'. dpkg-deb: building package 'rnahybrid-dbgsym' in '../rnahybrid-dbgsym_2.1.2-5_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../rnahybrid_2.1.2-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-03-06T21:41:07Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ rnahybrid_2.1.2-5_armhf.changes: -------------------------------- Format: 1.8 Date: Tue, 30 Oct 2018 11:29:39 +0100 Source: rnahybrid Binary: rnahybrid rnahybrid-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 2.1.2-5 Distribution: unstable-amd64-sbuild Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: rnahybrid - Fast and effective prediction of microRNA/target duplexes Changes: rnahybrid (2.1.2-5) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright Checksums-Sha1: 1289e21b1e128aa79ea5d0ce64852b6719e7e41c 354864 rnahybrid-dbgsym_2.1.2-5_armhf.deb f8f83908b2998a4a2f01a6ae29270364f0e91240 5049 rnahybrid_2.1.2-5_armhf.buildinfo 43f6830f61f50ce2729bbbd097586ca81bce330c 133736 rnahybrid_2.1.2-5_armhf.deb Checksums-Sha256: e081b667d27b5a4705f1c482726499967e6c243e611cb5bc3ec882a2f8c1ff42 354864 rnahybrid-dbgsym_2.1.2-5_armhf.deb 61c32cde145036af29963f45fcc79c35599977159e9c1a75d527efccefa4e390 5049 rnahybrid_2.1.2-5_armhf.buildinfo a5a96ab044cc509b4cbc01d47e7724c9d005ef21eefe4c6f232145bf8569d957 133736 rnahybrid_2.1.2-5_armhf.deb Files: 5dcbfdf19af66d175ea1c52cfd2c2bb8 354864 debug optional rnahybrid-dbgsym_2.1.2-5_armhf.deb 1ffee5e371ac8a19ef5f604450e3279f 5049 science optional rnahybrid_2.1.2-5_armhf.buildinfo f4acc93ad7302d438ef3232ebaec2988 133736 science optional rnahybrid_2.1.2-5_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: rnahybrid Binary: rnahybrid Architecture: armhf Version: 2.1.2-5 Checksums-Md5: 5dcbfdf19af66d175ea1c52cfd2c2bb8 354864 rnahybrid-dbgsym_2.1.2-5_armhf.deb f4acc93ad7302d438ef3232ebaec2988 133736 rnahybrid_2.1.2-5_armhf.deb Checksums-Sha1: 1289e21b1e128aa79ea5d0ce64852b6719e7e41c 354864 rnahybrid-dbgsym_2.1.2-5_armhf.deb 43f6830f61f50ce2729bbbd097586ca81bce330c 133736 rnahybrid_2.1.2-5_armhf.deb Checksums-Sha256: e081b667d27b5a4705f1c482726499967e6c243e611cb5bc3ec882a2f8c1ff42 354864 rnahybrid-dbgsym_2.1.2-5_armhf.deb a5a96ab044cc509b4cbc01d47e7724c9d005ef21eefe4c6f232145bf8569d957 133736 rnahybrid_2.1.2-5_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 06 Mar 2019 21:41:07 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-2), binutils (= 2.31.1-15), binutils-common (= 2.31.1-15), binutils-x86-64-linux-gnu (= 2.31.1-15), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-2), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.1-1), diffutils (= 1:3.7-2), dpkg (= 1.19.5), dpkg-dev (= 1.19.5), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), fontconfig-config (= 2.13.1-2), fonts-dejavu-core (= 2.37-1), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-2), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-2), gcc-8-base (= 8.3.0-2), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-2), libatomic1 (= 8.3.0-2), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-15), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-8), libc-dev-bin (= 2.28-8), libc6 (= 2.28-8), libc6-dev (= 2.28-8), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-2), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.5), libdebconfclient0 (= 0.248), libdpkg-perl (= 1.19.5), libelf1 (= 0.176-1), libexpat1 (= 2.2.6-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.1-1), libfontconfig1 (= 2.13.1-2), libfreetype6 (= 2.9.1-3), libg2-dev (= 0.72-8+b1), libg20 (= 0.72-8+b1), libgcc-8-dev (= 8.3.0-2), libgcc1 (= 1:8.3.0-2), libgcrypt20 (= 1.8.4-5), libgd3 (= 2.2.5-5.1), libgdbm-compat4 (= 1.18.1-3), libgdbm6 (= 1.18.1-3), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.3.0-2), libgpg-error0 (= 1.35-1), libicu63 (= 63.1-6), libisl19 (= 0.20-2), libitm1 (= 8.3.0-2), libjbig0 (= 2.1-3.1+b2), libjpeg62-turbo (= 1:1.5.2-2+b1), liblsan0 (= 8.3.0-2), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-2), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-11), libperl5.28 (= 5.28.1-4), libpipeline1 (= 1.5.1-2), libpng16-16 (= 1.6.36-5), libquadmath0 (= 8.3.0-2), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-2), libstdc++6 (= 8.3.0-2), libsystemd0 (= 241-1), libtiff5 (= 4.0.10-4), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-2), libubsan1 (= 8.3.0-2), libuchardet0 (= 0.0.6-3), libudev1 (= 241-1), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libwebp6 (= 0.6.1-2), libx11-6 (= 2:1.6.7-1), libx11-data (= 2:1.6.7-1), libxau6 (= 1:1.0.8-1+b2), libxcb1 (= 1.13.1-2), libxdmcp6 (= 1:1.1.2-3), libxml2 (= 2.9.4+dfsg1-7+b3), libxpm4 (= 1:3.5.12-1), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.20-1), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-3), perl (= 5.28.1-4), perl-base (= 5.28.1-4), perl-modules-5.28 (= 5.28.1-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), ucf (= 3.0038+nmu1), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=16" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" MAKEFLAGS=" -j16" SOURCE_DATE_EPOCH="1540895379" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ rnahybrid-dbgsym_2.1.2-5_armhf.deb ---------------------------------- new Debian package, version 2.0. size 354864 bytes: control archive=652 bytes. 460 bytes, 12 lines control 318 bytes, 3 lines md5sums Package: rnahybrid-dbgsym Source: rnahybrid Version: 2.1.2-5 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 398 Depends: rnahybrid (= 2.1.2-5) Section: debug Priority: optional Description: debug symbols for rnahybrid Build-Ids: 1cb34ac3bf8f31db7b689c5605f42f128fcb6495 f2a53aa736b22d06a1c585d869261609e007d88d fab7101505eee5c467f76da12a8488ae3b2af2ad drwxr-xr-x root/root 0 2018-10-30 10:29 ./ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/lib/debug/.build-id/1c/ -rw-r--r-- root/root 123312 2018-10-30 10:29 ./usr/lib/debug/.build-id/1c/b34ac3bf8f31db7b689c5605f42f128fcb6495.debug drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/lib/debug/.build-id/f2/ -rw-r--r-- root/root 135380 2018-10-30 10:29 ./usr/lib/debug/.build-id/f2/a53aa736b22d06a1c585d869261609e007d88d.debug drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/lib/debug/.build-id/fa/ -rw-r--r-- root/root 134288 2018-10-30 10:29 ./usr/lib/debug/.build-id/fa/b7101505eee5c467f76da12a8488ae3b2af2ad.debug drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-30 10:29 ./usr/share/doc/rnahybrid-dbgsym -> rnahybrid rnahybrid_2.1.2-5_armhf.deb --------------------------- new Debian package, version 2.0. size 133736 bytes: control archive=1384 bytes. 685 bytes, 14 lines control 1776 bytes, 24 lines md5sums Package: rnahybrid Version: 2.1.2-5 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 863 Depends: libc6 (>= 2.7), libg20 Section: science Priority: optional Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Description: Fast and effective prediction of microRNA/target duplexes RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction. drwxr-xr-x root/root 0 2018-10-30 10:29 ./ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/bin/ -rwxr-xr-x root/root 279980 2018-10-30 10:29 ./usr/bin/RNAcalibrate -rwxr-xr-x root/root 279980 2018-10-30 10:29 ./usr/bin/RNAeffective -rwxr-xr-x root/root 275876 2018-10-30 10:29 ./usr/bin/RNAhybrid drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/rnahybrid/ -rw-r--r-- root/root 154 2004-02-10 17:18 ./usr/share/doc/rnahybrid/AUTHORS -rw-r--r-- root/root 2047 2013-08-25 13:45 ./usr/share/doc/rnahybrid/README.gz -rw-r--r-- root/root 261 2018-10-30 10:29 ./usr/share/doc/rnahybrid/README.test -rw-r--r-- root/root 1255 2018-10-30 10:29 ./usr/share/doc/rnahybrid/changelog.Debian.gz -rw-r--r-- root/root 515 2013-08-25 22:34 ./usr/share/doc/rnahybrid/changelog.gz -rw-r--r-- root/root 2500 2018-10-30 10:29 ./usr/share/doc/rnahybrid/copyright drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/rnahybrid/examples/ -rw-r--r-- root/root 277 2004-03-01 15:37 ./usr/share/doc/rnahybrid/examples/3UTR_fly.freq -rw-r--r-- root/root 274 2004-03-01 15:54 ./usr/share/doc/rnahybrid/examples/3UTR_human.freq -rw-r--r-- root/root 270 2004-03-01 15:51 ./usr/share/doc/rnahybrid/examples/3UTR_worm.freq -rw-r--r-- root/root 1573 2013-08-25 13:10 ./usr/share/doc/rnahybrid/examples/cbr-hbl-1.fasta -rw-r--r-- root/root 1552 2013-08-25 13:10 ./usr/share/doc/rnahybrid/examples/cel-hbl-1.fasta -rw-r--r-- root/root 34 2004-11-15 20:11 ./usr/share/doc/rnahybrid/examples/cel-let-7.fasta -rw-r--r-- root/root 286 2004-03-23 11:53 ./usr/share/doc/rnahybrid/examples/coding_fly.freq -rw-r--r-- root/root 281 2004-03-11 12:59 ./usr/share/doc/rnahybrid/examples/coding_worm.freq -rw-r--r-- root/root 3125 2004-11-15 19:43 ./usr/share/doc/rnahybrid/examples/hbl-1.fasta -rw-r--r-- root/root 1438 2011-04-27 09:12 ./usr/share/doc/rnahybrid/examples/hunchback_related.fasta -rw-r--r-- root/root 30 2011-04-27 09:12 ./usr/share/doc/rnahybrid/examples/let-7.fasta -rw-r--r-- root/root 781 2018-10-30 10:29 ./usr/share/doc/rnahybrid/run-unit-test drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1721 2018-10-30 10:29 ./usr/share/man/man1/RNAcalibrate.1.gz -rw-r--r-- root/root 1599 2018-10-30 10:29 ./usr/share/man/man1/RNAeffective.1.gz -rw-r--r-- root/root 2517 2018-10-30 10:29 ./usr/share/man/man1/RNAhybrid.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [531 B] Get:5 copy:/<>/apt_archive ./ Packages [620 B] Fetched 2114 B in 0s (131 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: diffstat libapt-pkg-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libio-async-perl libio-pty-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libparse-debianchangelog-perl libpath-tiny-perl libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl lintian patchutils t1utils Suggested packages: libhtml-template-perl binutils-multiarch libtext-template-perl Recommended packages: libcgi-fast-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat libapt-pkg-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libio-async-perl libio-pty-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libparse-debianchangelog-perl libpath-tiny-perl libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl lintian patchutils sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. Need to get 2847 kB/2971 kB of archives. After this operation, 9356 kB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:3 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:4 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:5 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:6 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:7 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:8 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:9 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:10 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:11 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:12 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:13 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:14 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:15 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:16 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:17 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:18 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:19 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:20 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:21 http://cdn-fastly.deb.debian.org/debian sid/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:22 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:23 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:24 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:25 http://cdn-fastly.deb.debian.org/debian sid/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:26 http://cdn-fastly.deb.debian.org/debian sid/main amd64 lintian all 2.9.1 [1193 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2847 kB in 7s (386 kB/s) Selecting previously unselected package diffstat. (Reading database ... 19673 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../01-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../02-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../03-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../04-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../05-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../06-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../07-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../08-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../09-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../10-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../11-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../12-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../13-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../14-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../15-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../16-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../17-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../18-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../19-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../20-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../21-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../22-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../23-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../24-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../25-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../26-lintian_2.9.1_all.deb ... Unpacking lintian (2.9.1) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armhf. Preparing to unpack .../27-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libfuture-perl (0.39-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.9.1) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl uuid-runtime Use 'apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime Use 'apt autoremove' to remove them. The following packages will be REMOVED: autoconf* automake* autopoint* autotools-dev* bsdmainutils* debhelper* dh-autoreconf* dh-strip-nondeterminism* diffstat* dwz* fontconfig-config* fonts-dejavu-core* gcc-8-base:armhf* gettext* gettext-base* groff-base* intltool-debian* libapt-pkg-perl* libarchive-zip-perl* libasan5:armhf* libatomic1:armhf* libbsd0* libbsd0:armhf* libc6:armhf* libc6-dev:armhf* libcapture-tiny-perl* libcgi-pm-perl* libclass-accessor-perl* libclone-perl* libcroco3* libdigest-hmac-perl* libelf1* libemail-valid-perl* libexpat1:armhf* libexporter-tiny-perl* libfile-basedir-perl* libfile-stripnondeterminism-perl* libfontconfig1:armhf* libfreetype6:armhf* libfuture-perl* libg2-dev:armhf* libg20:armhf* libgcc-8-dev:armhf* libgcc1:armhf* libgd3:armhf* libglib2.0-0* libgomp1:armhf* libio-async-perl* libio-pty-perl* libipc-run-perl* libipc-system-simple-perl* libjbig0:armhf* libjpeg62-turbo:armhf* liblist-moreutils-perl* liblzma5:armhf* libncurses6* libnet-dns-perl* libnet-domain-tld-perl* libnet-ip-perl* libparse-debianchangelog-perl* libpath-tiny-perl* libpipeline1* libpng16-16:armhf* libsigsegv2* libstdc++-8-dev:armhf* libstdc++6:armhf* libstruct-dumb-perl* libsub-name-perl* libtext-levenshtein-perl* libtiff5:armhf* libtool* libubsan1:armhf* libuchardet0* libuuid1:armhf* libwebp6:armhf* libx11-6:armhf* libx11-data* libxau6:armhf* libxcb1:armhf* libxdmcp6:armhf* libxpm4:armhf* libzstd1:armhf* lintian* linux-libc-dev:armhf* m4* man-db* patchutils* po-debconf* sbuild-build-depends-lintian-dummy:armhf* sbuild-build-depends-main-dummy:armhf* t1utils* zlib1g:armhf* 0 upgraded, 0 newly installed, 92 to remove and 0 not upgraded. After this operation, 99.9 MB disk space will be freed. (Reading database ... 20951 files and directories currently installed.) Removing sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Removing sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Removing lintian (2.9.1) ... Removing diffstat (1.62-1) ... Removing libg2-dev:armhf (0.72-8+b1) ... Removing libg20:armhf (0.72-8+b1) ... Removing libgd3:armhf (2.2.5-5.1) ... Removing libfontconfig1:armhf (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing libstdc++-8-dev:armhf (8.3.0-2) ... Removing libgcc-8-dev:armhf (8.3.0-2) ... Removing libubsan1:armhf (8.3.0-2) ... Removing libasan5:armhf (8.3.0-2) ... Removing libstdc++6:armhf (8.3.0-2) ... Removing libapt-pkg-perl (0.1.34+b1) ... Removing libatomic1:armhf (8.3.0-2) ... Removing libxpm4:armhf (1:3.5.12-1) ... Removing libx11-6:armhf (2:1.6.7-1) ... Removing libxcb1:armhf (1.13.1-2) ... Removing libxdmcp6:armhf (1:1.1.2-3) ... Removing libbsd0:armhf (0.9.1-2) ... Removing libtiff5:armhf (4.0.10-4) ... Removing libfreetype6:armhf (2.9.1-3) ... Removing libpng16-16:armhf (1.6.36-5) ... Removing zlib1g:armhf (1:1.2.11.dfsg-1) ... Removing liblzma5:armhf (5.2.4-1) ... Removing libc6-dev:armhf (2.28-8) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libparse-debianchangelog-perl (1.2.0-13) ... Removing libcgi-pm-perl (4.40-1) ... Removing libclass-accessor-perl (0.51-1) ... Removing libclone-perl (0.41-1+b1) ... Removing libemail-valid-perl (1.202-1) ... Removing libnet-dns-perl (1.19-1) ... Removing libdigest-hmac-perl (1.03+dfsg-2) ... Removing libexpat1:armhf (2.2.6-1) ... Removing liblist-moreutils-perl (0.416-1+b4) ... Removing libexporter-tiny-perl (1.002001-1) ... Removing libfile-basedir-perl (0.08-1) ... Removing libio-async-perl (0.72-1) ... Removing libfuture-perl (0.39-1) ... Removing libgomp1:armhf (8.3.0-2) ... Removing libipc-run-perl (20180523.0-1) ... Removing libio-pty-perl (1:1.08-1.1+b5) ... Removing libipc-system-simple-perl (1.25-4) ... Removing libjbig0:armhf (2.1-3.1+b2) ... Removing libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Removing libnet-domain-tld-perl (1.75-1) ... Removing libnet-ip-perl (1.26-2) ... Removing libpath-tiny-perl (0.108-1) ... Removing libstruct-dumb-perl (0.09-1) ... Removing libsub-name-perl (0.21-1+b3) ... Removing libtext-levenshtein-perl (0.13-1) ... Removing libuuid1:armhf (2.33.1-0.1) ... Removing libwebp6:armhf (0.6.1-2) ... Removing libx11-data (2:1.6.7-1) ... Removing libxau6:armhf (1:1.0.8-1+b2) ... Removing libzstd1:armhf (1.3.8+dfsg-3) ... Removing linux-libc-dev:armhf (4.19.20-1) ... Removing patchutils (0.3.4-2) ... Removing t1utils (1.41-3) ... Removing libgcc1:armhf (1:8.3.0-2) ... Removing debhelper (12.1.1) ... Removing dh-strip-nondeterminism (1.1.1-1) ... Removing man-db (2.8.5-2) ... Removing bsdmainutils (11.1.2+b1) ... Removing dwz (0.12-3) ... Removing gcc-8-base:armhf (8.3.0-2) ... Removing po-debconf (1.0.21) ... Removing intltool-debian (0.35.0+20060710.5) ... Removing gettext (0.19.8.1-9) ... Removing gettext-base (0.19.8.1-9) ... Removing groff-base (1.22.4-3) ... Removing libfile-stripnondeterminism-perl (1.1.1-1) ... Removing libarchive-zip-perl (1.64-1) ... Removing libbsd0:amd64 (0.9.1-2) ... Removing libc6:armhf (2.28-8) ... Removing libcroco3:amd64 (0.6.12-3) ... Removing libelf1:amd64 (0.176-1) ... Removing libglib2.0-0:amd64 (2.58.3-1) ... Removing libncurses6:amd64 (6.1+20181013-2) ... Removing libpipeline1:amd64 (1.5.1-2) ... Removing libuchardet0:amd64 (0.0.6-3) ... Removing dh-autoreconf (19) ... Removing automake (1:1.16.1-4) ... Removing autoconf (2.69-11) ... Removing autopoint (0.19.8.1-9) ... Removing libtool (2.4.6-10) ... Removing autotools-dev (20180224.1) ... Removing m4 (1.4.18-2) ... Removing libsigsegv2:amd64 (2.12-2) ... Processing triggers for ccache (3.6-1) ... Updating symlinks in /usr/lib/ccache ... Processing triggers for libc-bin (2.28-8) ... (Reading database ... 16479 files and directories currently installed.) Purging configuration files for libglib2.0-0:amd64 (2.58.3-1) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for lintian (2.9.1) ... Purging configuration files for man-db (2.8.5-2) ... Purging configuration files for bsdmainutils (11.1.2+b1) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for autoconf (2.69-11) ... Purging configuration files for libc6:armhf (2.28-8) ... Purging configuration files for groff-base (1.22.4-3) ... +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 1326 Distribution: unstable-amd64-sbuild Foreign Architectures: armhf Host Architecture: armhf Install-Time: 10 Job: /home/build/sbuild-setup/repo/pool/main/r/rnahybrid/rnahybrid_2.1.2-5.dsc Lintian: pass Machine Architecture: amd64 Package: rnahybrid Package-Time: 1345 Source-Version: 2.1.2-5 Space: n/a Status: successful Version: 2.1.2-5 -------------------------------------------------------------------------------- Finished at 2019-03-06T21:41:07Z Build needed 00:22:25, no disk space