sbuild (Debian sbuild) 0.78.1 (09 February 2019) on 36857dea695f

+==============================================================================+
| tigr-glimmer 3.02b-2 (armhf)                 Thu, 07 Mar 2019 05:48:01 +0000 |
+==============================================================================+

Package: tigr-glimmer
Version: 3.02b-2
Source Version: 3.02b-2
Distribution: unstable-amd64-sbuild
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-19dca5de-90c1-45b9-ba6c-d6a7cf5d20bc' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/tigr-glimmer-Layzzi/resolver-ZRZqvY' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
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Hit:1 http://cdn-fastly.deb.debian.org/debian sid InRelease
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl libmailtools-perl
  libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime
Use 'apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

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| Fetch source files                                                           |
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Local sources
-------------

/home/build/sbuild-setup/repo/pool/main/t/tigr-glimmer/tigr-glimmer_3.02b-2.dsc exists in /home/build/sbuild-setup/repo/pool/main/t/tigr-glimmer; copying to chroot
I: NOTICE: Log filtering will replace 'build/tigr-glimmer-Layzzi/tigr-glimmer-3.02b' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tigr-glimmer-Layzzi' with '<<BUILDDIR>>'

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| Install package build dependencies                                           |
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Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), docbook-to-man, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
Filtered Build-Depends: debhelper (>= 11~), docbook-to-man, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [407 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [496 B]
Fetched 1860 B in 0s (124 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libauthen-sasl-perl libdata-dump-perl libfont-afm-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl libmailtools-perl
  libnet-smtp-ssl-perl libyaml-0-2 libyaml-libyaml-perl uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dwz
  gcc-8-base:armhf gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf
  libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl
  libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libncurses6
  libosp5 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf
  libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db opensp
  po-debconf sgml-base sgml-data xml-core
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make docbook-defguide docbook-dsssl docbook-xml psgml
  gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf
  libc-l10n:armhf locales:armhf manpages-dev:armhf libstdc++-8-doc:armhf
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs
  libxml2-utils
Recommended packages:
  curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dwz
  gcc-8-base:armhf gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf
  libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl
  libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libncurses6
  libosp5 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf
  libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db opensp
  po-debconf sbuild-build-depends-main-dummy:armhf sgml-base sgml-data
  xml-core
0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
Need to get 916 B/20.3 MB of archives.
After this operation, 87.3 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B]
debconf: delaying package configuration, since apt-utils is not installed
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| Check architectures                                                          |
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Initial Foreign Architectures: armhf 
Arch check ok (armhf included in any)

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| Build environment                                                            |
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Kernel: Linux 3.16.0-4-amd64 #1 SMP Debian 3.16.51-3 (2017-12-13) amd64 (x86_64)
Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-2 gcc-8_8.3.0-2 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-armhf-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-armhf-cross_8.3.0-2cross1 linux-libc-dev_4.19.20-1
Package versions: adduser_3.118 apt_1.8.0~rc4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-arm-linux-gnueabihf_2.31.1-15 binutils-common_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 ca-certificates_20190110 ccache_3.6-1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-2 cpp-8-arm-linux-gnueabihf_8.3.0-2cross1 cpp-arm-linux-gnueabihf_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-armhf_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.7-2 dirmngr_2.2.13-1 docbook_4.5-6 docbook-to-man_1:2.0.0-42 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.44.6-1 eatmydata_105-7 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-2 g++-8-arm-linux-gnueabihf_8.3.0-2cross1 g++-arm-linux-gnueabihf_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-2 gcc-8-arm-linux-gnueabihf_8.3.0-2cross1 gcc-8-arm-linux-gnueabihf-base_8.3.0-2cross1 gcc-8-base_8.3.0-2 gcc-8-cross-base_8.3.0-2cross1 gcc-arm-linux-gnueabihf_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.13-1 gnupg-l10n_2.2.13-1 gnupg-utils_2.2.13-1 gpg_2.2.13-1 gpg-agent_2.2.13-1 gpg-wks-client_2.2.13-1 gpg-wks-server_2.2.13-1 gpgconf_2.2.13-1 gpgsm_2.2.13-1 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0~rc4 libarchive-zip-perl_1.64-1 libasan5_8.3.0-2 libasan5-armhf-cross_8.3.0-2cross1 libassuan0_2.5.2-1 libatomic1_8.3.0-2 libatomic1-armhf-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libauthen-sasl-perl_2.1600-1 libbinutils_2.31.1-15 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-armhf-cross_2.28-7cross1 libc6-dev_2.28-8 libc6-dev-armhf-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-2 libcom-err2_1.44.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdata-dump-perl_1.23-1 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libeatmydata1_105-7 libelf1_0.176-1 libencode-locale-perl_1.05-1 libexpat1_2.2.6-1 libext2fs2_1.44.6-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.1.1-1 libfile-which-perl_1.23-1 libfont-afm-perl_1.20-2 libgcc-8-dev_8.3.0-2 libgcc-8-dev-armhf-cross_8.3.0-2cross1 libgcc1_1:8.3.0-2 libgcc1-armhf-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-3 libgdbm6_1.18.1-3 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.3.0-2 libgomp1-armhf-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libhtml-form-perl_6.03-1 libhtml-format-perl_2.12-1 libhtml-parser-perl_3.72-3+b3 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.04-1 libhttp-daemon-perl_6.01-3 libhttp-date-perl_6.02-1 libhttp-message-perl_6.18-1 libhttp-negotiate-perl_6.01-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.060-3 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-2 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmailtools-perl_2.18-1 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-2 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnet-http-perl_6.18-1 libnet-smtp-ssl-perl_1.04-1 libnet-ssleay-perl_1.85-2+b1 libnettle6_3.4.1-1 libnpth0_1.6-1 libosp5_1.5.2-13+b1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libquadmath0_8.3.0-2 libreadline7_7.0-5 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-1 libss2_1.44.6-1 libssl1.1_1.1.1b-1 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-armhf-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-armhf-cross_8.3.0-2cross1 libsystemd0_241-1 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtry-tiny-perl_0.30-1 libtsan0_8.3.0-2 libubsan1_8.3.0-2 libubsan1-armhf-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-1 libunistring2_0.9.10-1 liburi-perl_1.76-1 libuuid1_2.33.1-0.1 libwww-perl_6.36-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-parser-perl_2.44-4 libxml-sax-base-perl_1.09-1 libxml-sax-expat-perl_0.51-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-0-2_0.2.1-1 libyaml-libyaml-perl_0.76+repack-1 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.20-1 linux-libc-dev-armhf-cross_4.19.20-1cross1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 opensp_1.5.2-13+b1 openssl_1.1.1b-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 perl-openssl-defaults_3 pinentry-curses_1.1.0-1+b1 po-debconf_1.0.21 readline-common_7.0-5 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sgml-data_2.0.11 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 uuid-runtime_2.33.1-0.1 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: tigr-glimmer
Binary: tigr-glimmer
Architecture: any
Version: 3.02b-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Andreas Tille <tille@debian.org>
Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml
Standards-Version: 4.1.4
Vcs-Browser: https://salsa.debian.org/med-team/tigr-glimmer
Vcs-Git: https://salsa.debian.org/med-team/tigr-glimmer.git
Testsuite: autopkgtest
Build-Depends: debhelper (>= 11~), docbook-to-man
Package-List:
 tigr-glimmer deb science optional arch=any
Checksums-Sha1:
 665ed5c676c6d495e4354893e67ee605ec3e00da 5637975 tigr-glimmer_3.02b.orig.tar.gz
 8cab678b1a7348e7b5f708d8ab19c57d60e56050 19536 tigr-glimmer_3.02b-2.debian.tar.xz
Checksums-Sha256:
 ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 5637975 tigr-glimmer_3.02b.orig.tar.gz
 5bc26075f06f78281c063665bc6c87222d25d9478fab1bfd01117ea714808191 19536 tigr-glimmer_3.02b-2.debian.tar.xz
Files:
 344d012ae12596de905866fe9eb7f16c 5637975 tigr-glimmer_3.02b.orig.tar.gz
 5183670188f777523611c4626d0ca96b 19536 tigr-glimmer_3.02b-2.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat May 26 13:16:23 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tigr-glimmer_3.02b-2.dsc
dpkg-source: info: extracting tigr-glimmer in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz
dpkg-source: info: unpacking tigr-glimmer_3.02b-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_gcc4.3.patch
dpkg-source: info: applying mayhem.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CCACHE_COMPRESS=1
CCACHE_DIR=/var/cache/ccache-sbuild
CCACHE_UMASK=002
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=build
PATH=/usr/lib/ccache:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=build
SCHROOT_SESSION_ID=unstable-amd64-sbuild-19dca5de-90c1-45b9-ba6c-d6a7cf5d20bc
SCHROOT_UID=1000
SCHROOT_USER=build
SHELL=/bin/sh
USER=build

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot -j16
dpkg-buildpackage: info: source package tigr-glimmer
dpkg-buildpackage: info: source version 3.02b-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean debian/glimmer2_mans/tigr-anomaly.1 debian/glimmer2_mans/tigr-build-icm.1 debian/glimmer2_mans/tigr-extract.1 debian/glimmer2_mans/tigr-glimmer3.1 debian/glimmer2_mans/tigr-long-orfs.1 debian/glimmer2_mans/tigr-run-glimmer3.1
cd src; make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[2]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
cd /<<PKGBUILDDIR>>/obj; rm -f   
cd /<<PKGBUILDDIR>>/lib; rm -f  
cd /<<PKGBUILDDIR>>/bin; rm -f 
rm -f   
* Make Target is  clean
#####    Making Directory  /<<PKGBUILDDIR>>/src/Common   clean  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common'
cd /<<PKGBUILDDIR>>/obj; rm -f   delcher.o  fasta.o  gene.o 
cd /<<PKGBUILDDIR>>/lib; rm -f libGLMcommon.a 
cd /<<PKGBUILDDIR>>/bin; rm -f 
rm -f   delcher.d  fasta.d  gene.d 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common'
#####    Making Directory  /<<PKGBUILDDIR>>/src/ICM   clean  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM'
cd /<<PKGBUILDDIR>>/obj; rm -f   icm.o  build-icm.o  build-fixed.o  score-fixed.o 
cd /<<PKGBUILDDIR>>/lib; rm -f libGLMicm.a 
cd /<<PKGBUILDDIR>>/bin; rm -f build-icm build-fixed score-fixed
rm -f   icm.d  build-icm.d  build-fixed.d  score-fixed.d 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Glimmer   clean  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer'
cd /<<PKGBUILDDIR>>/obj; rm -f   anomaly.o  glimmer3.o  long-orfs.o  test.o 
cd /<<PKGBUILDDIR>>/lib; rm -f  
cd /<<PKGBUILDDIR>>/bin; rm -f anomaly glimmer3 long-orfs test
rm -f   anomaly.d  glimmer3.d  long-orfs.d  test.d 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Util   clean  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util'
cd /<<PKGBUILDDIR>>/obj; rm -f   entropy-profile.o  entropy-score.o  extract.o  multi-extract.o  start-codon-distrib.o  uncovered.o  window-acgt.o 
cd /<<PKGBUILDDIR>>/lib; rm -f  
cd /<<PKGBUILDDIR>>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt
rm -f   entropy-profile.d  entropy-score.d  extract.d  multi-extract.d  start-codon-distrib.d  uncovered.d  window-acgt.d 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
rm -f bin/* lib/* obj/*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
docbook-to-man debian/glimmer2_mans/tigr-anomaly.sgml > debian/glimmer2_mans/tigr-anomaly.1
docbook-to-man debian/glimmer2_mans/tigr-build-icm.sgml > debian/glimmer2_mans/tigr-build-icm.1
docbook-to-man debian/glimmer2_mans/tigr-extract.sgml > debian/glimmer2_mans/tigr-extract.1
docbook-to-man debian/glimmer2_mans/tigr-glimmer3.sgml > debian/glimmer2_mans/tigr-glimmer3.1
docbook-to-man debian/glimmer2_mans/tigr-long-orfs.sgml > debian/glimmer2_mans/tigr-long-orfs.1
docbook-to-man debian/glimmer2_mans/tigr-run-glimmer3.sgml > debian/glimmer2_mans/tigr-run-glimmer3.1
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17:E: document type does not allow element "TITLE" here
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] (#PCDATA[1])
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:53:15:E: document type does not allow element "MANVOLNUM" here
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:53:15: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] TITLE[1] (#PCDATA[1])
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11:E: end tag for "TITLE" omitted, but OMITTAG NO was specified
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: start tag was here
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] TITLE[1] (#PCDATA[1])
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11:E: end tag for "REFENTRYTITLE" omitted, but OMITTAG NO was specified
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:51:17: start tag was here
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-build-icm.sgml:54:11: open elements: REFENTRY REFMETA[1] REFENTRYTITLE[1] (#PCDATA[1])
Warning: transpec not found for TITLE
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-anomaly.sgml:77:12:E: end tag for "REFSECT1" which is not finished
/usr/bin/onsgmls:debian/glimmer2_mans/tigr-anomaly.sgml:77:12: open elements: REFENTRY REFSECT1[1] (TITLE[1])
dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now"
	cd src && make -j16 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc "CFLAGS=-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
* Make Target is  all
#####    Making Directory  /<<PKGBUILDDIR>>/src/Common   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  delcher.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  fasta.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  gene.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
gene.cc: In member function ‘bool PWM_t::Read(FILE*)’:
gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf (fp, "%d", & width);
    ~~~~~~~^~~~~~~~~~~~~~~~~~~
gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fp, "%s", tag);   // skip tag in first column
       ~~~~~~~^~~~~~~~~~~~~~~
gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
          fscanf (fp, "%lf", & x);
          ~~~~~~~^~~~~~~~~~~~~~~~
gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’:
gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fgets (Line, MAX_LINE, fp);
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from delcher.hh:32,
                 from gene.cc:10:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = DNA_vect_t; _Alloc = std::allocator<DNA_vect_t>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector<DNA_vect_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<DNA_vect_t*, std::vector<DNA_vect_t> >’} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from delcher.hh:32,
                 from gene.cc:10:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘bool PWM_t::Read(FILE*)’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DNA_vect_t*, std::vector<DNA_vect_t> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘PWM_t& PWM_t::operator=(const PWM_t&)’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<DNA_vect_t*, std::vector<DNA_vect_t> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
###################  libGLMcommon.a #####################
ar: creating /<<PKGBUILDDIR>>/lib/libGLMcommon.a
a - delcher.o
a - fasta.o
a - gene.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common'
#####    Making Directory  /<<PKGBUILDDIR>>/src/ICM   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  icm.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’:
icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fread (line, sizeof (char), ID_STRING_LEN, fp);    // skip the text header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fread (permutation, sizeof (int), length, fp);
    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from icm.hh:15,
                 from icm.cc:16:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from icm.hh:15,
                 from icm.cc:16:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void ICM_t::Cumulative_Score(const string&, std::vector<double>&, int) const’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  build-icm.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  build-fixed.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  score-fixed.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
###################  libGLMicm.a #####################
ar: creating /<<PKGBUILDDIR>>/lib/libGLMicm.a
a - icm.o
a - build-icm.o
a - build-fixed.o
a - score-fixed.o
++++++++++++++++++++  build-icm ++++++++++++++++++++++
++++++++++++++++++++  build-fixed ++++++++++++++++++++++
++++++++++++++++++++  score-fixed ++++++++++++++++++++++
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Glimmer   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  anomaly.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  glimmer3.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’:
glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fgets (line, MAX_LINE, fp);  // skip header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, std::vector<_Tp, _Alloc>::value_type) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘void Integerize_Scores(std::vector<double>, int, std::vector<bool>, std::vector<int>&)’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘void Parse_Command_Line(int, char**)’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Start_t; _Alloc = std::allocator<Start_t>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type ‘std::vector<Start_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Start_t*, std::vector<Start_t> >’} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Gene_t; _Alloc = std::allocator<Gene_t>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type ‘std::vector<Gene_t>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘void Score_Orfs(std::vector<Orf_t>&, std::vector<Gene_t>&, FILE*)’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Start_t*, std::vector<Start_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:25,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const Gene_t&, const Gene_t&)>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
     __unguarded_linear_insert(_RandomAccessIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Gene_t&, const Gene_t&)>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:25,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >; _Distance = int; _Tp = Gene_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Gene_t&, const Gene_t&)>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:25,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Gene_t&, const Gene_t&)>]’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:32,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62,
                 from /<<PKGBUILDDIR>>/src/Common/delcher.hh:25,
                 from glimmer3.hh:15,
                 from glimmer3.cc:17:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Gene_t*, std::vector<Gene_t> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  long-orfs.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’:
long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fgets (line, MAX_LINE, fp);  // skip header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  test.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
++++++++++++++++++++  anomaly ++++++++++++++++++++++
++++++++++++++++++++  glimmer3 ++++++++++++++++++++++
++++++++++++++++++++  long-orfs ++++++++++++++++++++++
++++++++++++++++++++  test ++++++++++++++++++++++
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Util   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  entropy-score.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’:
entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fgets (line, MAX_LINE, fp);  // skip header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  extract.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  multi-extract.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  uncovered.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  window-acgt.cc @@@@@@@@@@@@@@@@@@@@@
<command-line>: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
++++++++++++++++++++  entropy-profile ++++++++++++++++++++++
++++++++++++++++++++  entropy-score ++++++++++++++++++++++
++++++++++++++++++++  extract ++++++++++++++++++++++
++++++++++++++++++++  multi-extract ++++++++++++++++++++++
++++++++++++++++++++  start-codon-distrib ++++++++++++++++++++++
++++++++++++++++++++  uncovered ++++++++++++++++++++++
++++++++++++++++++++  window-acgt ++++++++++++++++++++++
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util'
* Make Target is  all
#####    Making Directory  /<<PKGBUILDDIR>>/src/Common   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common'
#####    Making Directory  /<<PKGBUILDDIR>>/src/ICM   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Glimmer   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Util   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util'
* Make Target is  all
#####    Making Directory  /<<PKGBUILDDIR>>/src/Common   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common'
#####    Making Directory  /<<PKGBUILDDIR>>/src/ICM   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Glimmer   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer'
#####    Making Directory  /<<PKGBUILDDIR>>/src/Util   all  #####
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/uncovered contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/window-acgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/multi-extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/score-fixed contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-fixed contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/glimmer3 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-score contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/start-codon-distrib contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/long-orfs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/test contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-profile contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/anomaly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-icm contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-2_armhf.deb'.
dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-2_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../tigr-glimmer_3.02b-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-03-07T05:48:43Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


tigr-glimmer_3.02b-2_armhf.changes:
-----------------------------------

Format: 1.8
Date: Sat, 26 May 2018 15:08:21 +0200
Source: tigr-glimmer
Binary: tigr-glimmer tigr-glimmer-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armhf
Version: 3.02b-2
Distribution: unstable-amd64-sbuild
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 tigr-glimmer - Gene detection in archea and bacteria
Closes: 900114
Changes:
 tigr-glimmer (3.02b-2) unstable; urgency=medium
 .
   [ Helmut Grohne ]
   * Fix FTCBFS: Use dh_auto_build. (Closes: #900114)
 .
   [ Andreas Tille ]
   * debhelper 11
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.1.4
   * Secure URI in watch file
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Files:
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 7d82e05b814044271fa20d41d6cd3dc7 4698 science optional tigr-glimmer_3.02b-2_armhf.buildinfo
 4e441e9bdfd119ce3c397e140379a10e 260384 science optional tigr-glimmer_3.02b-2_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: tigr-glimmer
Binary: tigr-glimmer
Architecture: armhf
Version: 3.02b-2
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Thu, 07 Mar 2019 05:48:43 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.69-11),
 automake (= 1:1.16.1-4),
 autopoint (= 0.19.8.1-9),
 autotools-dev (= 20180224.1),
 base-files (= 10.1),
 base-passwd (= 3.5.46),
 bash (= 5.0-2),
 binutils (= 2.31.1-15),
 binutils-common (= 2.31.1-15),
 binutils-x86-64-linux-gnu (= 2.31.1-15),
 bsdmainutils (= 11.1.2+b1),
 bsdutils (= 1:2.33.1-0.1),
 build-essential (= 12.6),
 bzip2 (= 1.0.6-9),
 coreutils (= 8.30-3),
 cpp (= 4:8.3.0-1),
 cpp-8 (= 8.3.0-2),
 dash (= 0.5.10.2-5),
 debconf (= 1.5.71),
 debhelper (= 12.1.1),
 debianutils (= 4.8.6.1),
 dh-autoreconf (= 19),
 dh-strip-nondeterminism (= 1.1.1-1),
 diffutils (= 1:3.7-2),
 docbook (= 4.5-6),
 docbook-to-man (= 1:2.0.0-42),
 dpkg (= 1.19.5),
 dpkg-dev (= 1.19.5),
 dwz (= 0.12-3),
 fdisk (= 2.33.1-0.1),
 file (= 1:5.35-4),
 findutils (= 4.6.0+git+20190209-2),
 g++ (= 4:8.3.0-1),
 g++-8 (= 8.3.0-2),
 gcc (= 4:8.3.0-1),
 gcc-8 (= 8.3.0-2),
 gcc-8-base (= 8.3.0-2),
 gettext (= 0.19.8.1-9),
 gettext-base (= 0.19.8.1-9),
 grep (= 3.3-1),
 groff-base (= 1.22.4-3),
 gzip (= 1.9-3),
 hostname (= 3.21),
 init-system-helpers (= 1.56+nmu1),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.2.53-4),
 libarchive-zip-perl (= 1.64-1),
 libasan5 (= 8.3.0-2),
 libatomic1 (= 8.3.0-2),
 libattr1 (= 1:2.4.48-4),
 libaudit-common (= 1:2.8.4-2),
 libaudit1 (= 1:2.8.4-2),
 libbinutils (= 2.31.1-15),
 libblkid1 (= 2.33.1-0.1),
 libbsd0 (= 0.9.1-2),
 libbz2-1.0 (= 1.0.6-9),
 libc-bin (= 2.28-8),
 libc-dev-bin (= 2.28-8),
 libc6 (= 2.28-8),
 libc6-dev (= 2.28-8),
 libcap-ng0 (= 0.7.9-2),
 libcc1-0 (= 8.3.0-2),
 libcroco3 (= 0.6.12-3),
 libdb5.3 (= 5.3.28+dfsg1-0.5),
 libdebconfclient0 (= 0.248),
 libdpkg-perl (= 1.19.5),
 libelf1 (= 0.176-1),
 libfdisk1 (= 2.33.1-0.1),
 libffi6 (= 3.2.1-9),
 libfile-stripnondeterminism-perl (= 1.1.1-1),
 libgcc-8-dev (= 8.3.0-2),
 libgcc1 (= 1:8.3.0-2),
 libgcrypt20 (= 1.8.4-5),
 libgdbm-compat4 (= 1.18.1-3),
 libgdbm6 (= 1.18.1-3),
 libglib2.0-0 (= 2.58.3-1),
 libgmp10 (= 2:6.1.2+dfsg-4),
 libgomp1 (= 8.3.0-2),
 libgpg-error0 (= 1.35-1),
 libicu63 (= 63.1-6),
 libisl19 (= 0.20-2),
 libitm1 (= 8.3.0-2),
 liblsan0 (= 8.3.0-2),
 liblz4-1 (= 1.8.3-1),
 liblzma5 (= 5.2.4-1),
 libmagic-mgc (= 1:5.35-4),
 libmagic1 (= 1:5.35-4),
 libmount1 (= 2.33.1-0.1),
 libmpc3 (= 1.1.0-1),
 libmpfr6 (= 4.0.2-1),
 libmpx2 (= 8.3.0-2),
 libncurses6 (= 6.1+20181013-2),
 libncursesw6 (= 6.1+20181013-2),
 libosp5 (= 1.5.2-13+b1),
 libpam-modules (= 1.3.1-5),
 libpam-modules-bin (= 1.3.1-5),
 libpam-runtime (= 1.3.1-5),
 libpam0g (= 1.3.1-5),
 libpcre3 (= 2:8.39-11),
 libperl5.28 (= 5.28.1-4),
 libpipeline1 (= 1.5.1-2),
 libquadmath0 (= 8.3.0-2),
 libseccomp2 (= 2.3.3-4),
 libselinux1 (= 2.8-1+b1),
 libsigsegv2 (= 2.12-2),
 libsmartcols1 (= 2.33.1-0.1),
 libstdc++-8-dev (= 8.3.0-2),
 libstdc++6 (= 8.3.0-2),
 libsystemd0 (= 241-1),
 libtinfo6 (= 6.1+20181013-2),
 libtool (= 2.4.6-10),
 libtsan0 (= 8.3.0-2),
 libubsan1 (= 8.3.0-2),
 libuchardet0 (= 0.0.6-3),
 libudev1 (= 241-1),
 libunistring2 (= 0.9.10-1),
 libuuid1 (= 2.33.1-0.1),
 libxml2 (= 2.9.4+dfsg1-7+b3),
 linux-libc-dev (= 4.19.20-1),
 login (= 1:4.5-1.1),
 m4 (= 1.4.18-2),
 make (= 4.2.1-1.2),
 man-db (= 2.8.5-2),
 mawk (= 1.3.3-17+b3),
 ncurses-base (= 6.1+20181013-2),
 ncurses-bin (= 6.1+20181013-2),
 opensp (= 1.5.2-13+b1),
 patch (= 2.7.6-3),
 perl (= 5.28.1-4),
 perl-base (= 5.28.1-4),
 perl-modules-5.28 (= 5.28.1-4),
 po-debconf (= 1.0.21),
 sed (= 4.7-1),
 sensible-utils (= 0.0.12),
 sgml-base (= 1.29),
 sgml-data (= 2.0.11),
 sysvinit-utils (= 2.93-8),
 tar (= 1.30+dfsg-5),
 util-linux (= 2.33.1-0.1),
 xml-core (= 0.18+nmu1),
 xz-utils (= 5.2.4-1),
 zlib1g (= 1:1.2.11.dfsg-1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=16"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 MAKEFLAGS=" -j16"
 SOURCE_DATE_EPOCH="1527340101"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


tigr-glimmer-dbgsym_3.02b-2_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 2266144 bytes: control archive=1196 bytes.
     924 bytes,    12 lines      control              
    1484 bytes,    14 lines      md5sums              
 Package: tigr-glimmer-dbgsym
 Source: tigr-glimmer
 Version: 3.02b-2
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2474
 Depends: tigr-glimmer (= 3.02b-2)
 Section: debug
 Priority: optional
 Description: debug symbols for tigr-glimmer
 Build-Ids: 008dc87e8ae08efeb4e01c57a41203a6b1f0acf1 0354cba471d8e040b9055150005930443d77ccef 0b90d85e61021853f178e3d9b90d3a2cba55f595 1001ae43653b62927a80c9382b98f17a1de6f308 1690bdc5e8d0b0f7316498d89fee3a0b550da33f 18b25f388e9d31ecaacb963260fb31602bc01382 787fc2d9c6a8f3b236944b9977fcac60a4ba76f4 85c12e6a86789f5a28f48c8f697ae684d3cc07d5 9aca6c86aed95bd41fdc517a203e69a551ecd1ab ce63f4f834659e7b7991c7cf7cef285d406afe51 e7e02814def49bd82cb74d793afcf71fc0b71768 eb264a493d90176b9bf658a7b0c06e87718568e3 fca3d20ba0ef94d34d79b6f6ced74c918fd70460 ff4a9f6504940e66d3dd3479b60d7105996d45b7

drwxr-xr-x root/root         0 2018-05-26 13:08 ./
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/00/
-rw-r--r-- root/root    131708 2018-05-26 13:08 ./usr/lib/debug/.build-id/00/8dc87e8ae08efeb4e01c57a41203a6b1f0acf1.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/03/
-rw-r--r-- root/root    136828 2018-05-26 13:08 ./usr/lib/debug/.build-id/03/54cba471d8e040b9055150005930443d77ccef.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/0b/
-rw-r--r-- root/root    202096 2018-05-26 13:08 ./usr/lib/debug/.build-id/0b/90d85e61021853f178e3d9b90d3a2cba55f595.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root     46072 2018-05-26 13:08 ./usr/lib/debug/.build-id/10/01ae43653b62927a80c9382b98f17a1de6f308.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/16/
-rw-r--r-- root/root    223396 2018-05-26 13:08 ./usr/lib/debug/.build-id/16/90bdc5e8d0b0f7316498d89fee3a0b550da33f.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/18/
-rw-r--r-- root/root    264232 2018-05-26 13:08 ./usr/lib/debug/.build-id/18/b25f388e9d31ecaacb963260fb31602bc01382.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root    140940 2018-05-26 13:08 ./usr/lib/debug/.build-id/78/7fc2d9c6a8f3b236944b9977fcac60a4ba76f4.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root    503124 2018-05-26 13:08 ./usr/lib/debug/.build-id/85/c12e6a86789f5a28f48c8f697ae684d3cc07d5.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/9a/
-rw-r--r-- root/root    157008 2018-05-26 13:08 ./usr/lib/debug/.build-id/9a/ca6c86aed95bd41fdc517a203e69a551ecd1ab.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/ce/
-rw-r--r-- root/root    150744 2018-05-26 13:08 ./usr/lib/debug/.build-id/ce/63f4f834659e7b7991c7cf7cef285d406afe51.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/e7/
-rw-r--r-- root/root     98264 2018-05-26 13:08 ./usr/lib/debug/.build-id/e7/e02814def49bd82cb74d793afcf71fc0b71768.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root    156532 2018-05-26 13:08 ./usr/lib/debug/.build-id/eb/264a493d90176b9bf658a7b0c06e87718568e3.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root    222124 2018-05-26 13:08 ./usr/lib/debug/.build-id/fc/a3d20ba0ef94d34d79b6f6ced74c918fd70460.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root     69640 2018-05-26 13:08 ./usr/lib/debug/.build-id/ff/4a9f6504940e66d3dd3479b60d7105996d45b7.debug
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer-dbgsym -> tigr-glimmer


tigr-glimmer_3.02b-2_armhf.deb
------------------------------

 new Debian package, version 2.0.
 size 260384 bytes: control archive=1668 bytes.
     749 bytes,    17 lines      control              
    2390 bytes,    33 lines      md5sums              
 Package: tigr-glimmer
 Version: 3.02b-2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 616
 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
 Section: science
 Priority: optional
 Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml
 Description: Gene detection in archea and bacteria
  Developed by the TIGR institute this software detects coding sequences in
  bacteria and archea.
  .
  Glimmer is a system for finding genes in microbial DNA, especially the
  genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated
  Markov Modeler) uses interpolated Markov models (IMMs) to identify the
  coding regions and distinguish them from noncoding DNA.

drwxr-xr-x root/root         0 2018-05-26 13:08 ./
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/bin/
-rwxr-xr-x root/root       412 2018-05-26 13:08 ./usr/bin/tigr-glimmer
-rwxr-xr-x root/root       686 2018-05-26 13:08 ./usr/bin/tigr-run-glimmer3
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/lib/tigr-glimmer/
-rwxr-xr-x root/root     26124 2018-05-26 13:08 ./usr/lib/tigr-glimmer/anomaly
-rwxr-xr-x root/root     38428 2018-05-26 13:08 ./usr/lib/tigr-glimmer/build-fixed
-rwxr-xr-x root/root     38604 2018-05-26 13:08 ./usr/lib/tigr-glimmer/build-icm
-rwxr-xr-x root/root     22092 2018-05-26 13:08 ./usr/lib/tigr-glimmer/entropy-profile
-rwxr-xr-x root/root     26576 2018-05-26 13:08 ./usr/lib/tigr-glimmer/entropy-score
-rwxr-xr-x root/root     26256 2018-05-26 13:08 ./usr/lib/tigr-glimmer/extract
-rwxr-xr-x root/root     84136 2018-05-26 13:08 ./usr/lib/tigr-glimmer/glimmer3
-rwxr-xr-x root/root     43092 2018-05-26 13:08 ./usr/lib/tigr-glimmer/long-orfs
-rwxr-xr-x root/root     26256 2018-05-26 13:08 ./usr/lib/tigr-glimmer/multi-extract
-rwxr-xr-x root/root     38412 2018-05-26 13:08 ./usr/lib/tigr-glimmer/score-fixed
-rwxr-xr-x root/root     26256 2018-05-26 13:08 ./usr/lib/tigr-glimmer/start-codon-distrib
-rwxr-xr-x root/root      9688 2018-05-26 13:08 ./usr/lib/tigr-glimmer/test
-rwxr-xr-x root/root     17980 2018-05-26 13:08 ./usr/lib/tigr-glimmer/uncovered
-rwxr-xr-x root/root     13884 2018-05-26 13:08 ./usr/lib/tigr-glimmer/window-acgt
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/
-rw-r--r-- root/root       957 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/README.Debian
-rw-r--r-- root/root      1469 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/changelog.Debian.gz
-rw-r--r-- root/root      1059 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/copyright
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/examples/
-rw-r--r-- root/root      2269 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/examples/example.fa
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/
-rw-r--r-- root/root      2275 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz
-rw-r--r-- root/root      2670 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme
-rw-r--r-- root/root      2126 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme
-rw-r--r-- root/root      5006 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz
-rw-r--r-- root/root      2480 2018-05-26 13:08 ./usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz
-rw-r--r-- root/root    131266 2013-02-05 20:32 ./usr/share/doc/tigr-glimmer/notes.pdf.gz
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/man/
drwxr-xr-x root/root         0 2018-05-26 13:08 ./usr/share/man/man1/
-rw-r--r-- root/root       452 2018-05-26 13:08 ./usr/share/man/man1/tigr-anomaly.1.gz
-rw-r--r-- root/root      1379 2018-05-26 13:08 ./usr/share/man/man1/tigr-build-icm.1.gz
-rw-r--r-- root/root      1129 2018-05-26 13:08 ./usr/share/man/man1/tigr-extract.1.gz
-rw-r--r-- root/root       805 2018-05-26 13:08 ./usr/share/man/man1/tigr-glimmer.1.gz
-rw-r--r-- root/root      2320 2018-05-26 13:08 ./usr/share/man/man1/tigr-glimmer3.1.gz
-rw-r--r-- root/root      2387 2018-05-26 13:08 ./usr/share/man/man1/tigr-long-orfs.1.gz
-rw-r--r-- root/root       526 2018-05-26 13:08 ./usr/share/man/man1/tigr-run-glimmer3.1.gz


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Removing libipc-system-simple-perl (1.25-4) ...
Removing libnet-domain-tld-perl (1.75-1) ...
Removing libnet-ip-perl (1.26-2) ...
Removing opensp (1.5.2-13+b1) ...
Removing libosp5 (1.5.2-13+b1) ...
Removing libpath-tiny-perl (0.108-1) ...
Removing libstruct-dumb-perl (0.09-1) ...
Removing libsub-name-perl (0.21-1+b3) ...
Removing libtext-levenshtein-perl (0.13-1) ...
Removing linux-libc-dev:armhf (4.19.20-1) ...
Removing patchutils (0.3.4-2) ...
Removing sgml-data (2.0.11) ...
Removing xml-core (0.18+nmu1) ...
Removing sgml-base (1.29) ...
Removing t1utils (1.41-3) ...
Removing libgcc1:armhf (1:8.3.0-2) ...
Removing debhelper (12.1.1) ...
Removing dh-strip-nondeterminism (1.1.1-1) ...
Removing man-db (2.8.5-2) ...
Removing bsdmainutils (11.1.2+b1) ...
Removing dwz (0.12-3) ...
Removing gcc-8-base:armhf (8.3.0-2) ...
Removing po-debconf (1.0.21) ...
Removing intltool-debian (0.35.0+20060710.5) ...
Removing gettext (0.19.8.1-9) ...
Removing gettext-base (0.19.8.1-9) ...
Removing groff-base (1.22.4-3) ...
Removing libfile-stripnondeterminism-perl (1.1.1-1) ...
Removing libarchive-zip-perl (1.64-1) ...
Removing libbsd0:amd64 (0.9.1-2) ...
Removing libc6:armhf (2.28-8) ...
Removing libcroco3:amd64 (0.6.12-3) ...
Removing libelf1:amd64 (0.176-1) ...
Removing libglib2.0-0:amd64 (2.58.3-1) ...
Removing libncurses6:amd64 (6.1+20181013-2) ...
Removing libpipeline1:amd64 (1.5.1-2) ...
Removing libuchardet0:amd64 (0.0.6-3) ...
Removing dh-autoreconf (19) ...
Removing automake (1:1.16.1-4) ...
Removing autoconf (2.69-11) ...
Removing autopoint (0.19.8.1-9) ...
Removing libtool (2.4.6-10) ...
Removing autotools-dev (20180224.1) ...
Removing m4 (1.4.18-2) ...
Removing libsigsegv2:amd64 (2.12-2) ...
Processing triggers for ccache (3.6-1) ...
Updating symlinks in /usr/lib/ccache ...
Processing triggers for libc-bin (2.28-8) ...
(Reading database ... 16484 files and directories currently installed.)
Purging configuration files for libglib2.0-0:amd64 (2.58.3-1) ...
Purging configuration files for lintian (2.9.1) ...
Purging configuration files for man-db (2.8.5-2) ...
Purging configuration files for bsdmainutils (11.1.2+b1) ...
Purging configuration files for autoconf (2.69-11) ...
Purging configuration files for libc6:armhf (2.28-8) ...
Purging configuration files for docbook (4.5-6) ...
Purging configuration files for groff-base (1.22.4-3) ...
Purging configuration files for xml-core (0.18+nmu1) ...
dpkg: warning: while removing xml-core, directory '/etc/xml' not empty so not removed
Purging configuration files for sgml-base (1.29) ...
Purging configuration files for sgml-data (2.0.11) ...

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 29
Distribution: unstable-amd64-sbuild
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 8
Job: /home/build/sbuild-setup/repo/pool/main/t/tigr-glimmer/tigr-glimmer_3.02b-2.dsc
Lintian: pass
Machine Architecture: amd64
Package: tigr-glimmer
Package-Time: 42
Source-Version: 3.02b-2
Space: n/a
Status: successful
Version: 3.02b-2
--------------------------------------------------------------------------------
Finished at 2019-03-07T05:48:43Z
Build needed 00:00:42, no disk space