--- title: Software Modules linkTitle: Modules type: docs weight: 2 aliases: - /software_modules.html - /software_modules --- The following packages are available on the cluster as modules. To load the default version of a module, use: `module load [package]` To load a specific version of a module, use: `module load [package]/[version]` To view this list at the command line, use: `module avail` |Package Name|Versions| |---|---| |AAFTF|0.3.0| |AAFTF|0.3.1| |AAFTF|0.3.3| |AAFTF|0.3.4| |AAFTF|0.4.1| |AAFTF|0.5.0| |abyss|2.3.4| |almabte|1.3.2| |alphafold|2.1.2| |alphafold|2.3.0| |amber|22| |amber|22_mpi_cuda| |amptk|1.5| |amptk|1.6| |anaconda|2021.11-py39_0| |angsd|0.937| |ant|1.10.12| |antismash|5.1.2| |antismash|6.0.0| |antismash|6.1.1| |antismash|7.0.0| |anvio|7.1| |anvio|8.0| |arcs|1.2.3| |aria2|1.36.0| |aspera|3.6.0| |aspera|4.2.4.265| |aspera|4.2.6.393| |ASTRAL-Pro|1.1.3| |ASTRAL|4.7.8| |ASTRAL|4.7.12| |ASTRAL|4.10.7| |ASTRAL|4.10.12| |ASTRAL|5.5.6| |ASTRAL|5.6.1| |ASTRAL|5.6.3| |ASTRAL|5.7.1| |ASTRAL|5.14.3| |ASTRAL|5.15.4| |ASTRAL|5.15.5| |augustus|3.3.3| |augustus|3.4.0| |augustus|3.5.0| |autodockfr|1.0| |automake|1.14| |autometa|1.0.3| |autometa|2.0.2| |aws|2.7.31| |bakta|1.5.1| |bamtools|2.5.2| |barrnap|0.9| |bat|0.18.3| |BBMap|38.95| |bcftools|1.15| |bcftools|1.16| |bcftools|1.17| |bcftools|1.18| |bcl2fastq|2.20.0.422| |bclconvert|4.1.7| |bclconvert|4.2.4| |beagle-lib|3.1.2| |beagle|4.1| |beagle|5.2| |beast|1.10.4| |beast|2.6.6| |beast|2.7.1| |bedops|2.4.40| |bedtools|2.29.1| |bedtools|2.30.0| |bigscape|1.1.5| |bin3C|2020-12-15| |bioperl|1.7| |bioperl|1.7.8| |biopython|1.70| |biopython|1.79| |biopython|1.81| |bismark|0.22.3| |bismark|0.24.1| |blobtools|1.1.1| |blobtools2|3.1.0| |bonito|0.6.2(default)| |bonito|dev| |boost|1.62.0_openmpi| |boost|1.78.0| |boost|1.80.0| |bowtie|1.3.1| |bowtie2|2.4.5| |bracken|2.6.2| |braker|3.0.3| |busco|5.3.0| |busco|5.3.2| |busco|5.4.3| |busco|5.4.4| |bwa-mem2|2.2.1| |bwa|0.7.17| |cafe|5.0.0| |canu|2.2| |cap3|2005.06.07.amd64| |cap3|2005.06.07.intel| |cap3|2015-02-10| |cblaster|1.3.12| |cblaster|1.3.18| |cd-hit|4.8.1| |cellprofiler|4.2.5| |cellranger|7.1.0| |centos|7.9| |cgal|0.9.6| |charliecloud|0.32| |charliecloud|0.33| |checkm|1.2.1| |checkv|1.0.1| |clinker|1.3.12| |clinker|1.3.18| |clipkit|1.3.0| |clust|1.17.0| |cmake|3.27.1| |cnvnator|0.4.1| |CodingQuarry|2.0| |concoct|1.1.0| |cp2k|7.1_oneapi-2022.1.2.146| |cplex-studio|22.1.1| |csvkit|1.0.7| |cuda|10.1| |cuda|10.2| |cuda|11.4(default)| |cuda|11.7| |cuda|11.8| |cuda|12.1| |cudnn|8.2.4.15| |cudnn|8.9.5.29| |cufflinks|2.2.1| |cutadapt|3.7| |cutadapt|4.1| |cytoscape|3.10.0| |cyvcf2|0.30.15| |db-cazy|3.0| |db-cazy|4.0| |db-cazy|5.0| |db-cazy|9.0| |db-cazy|10.0| |db-cazy|11.0| |db-checkv|0.6| |db-diamond|20161103| |db-diamond|20190125| |db-diamond|20210403(default)| |db-diamond|20230130| |db-kaiju|20170113-e| |db-merops|110| |db-merops|120(default)| |db-merops|2017-02-02| |db-ncbi|20140623| |db-ncbi|20150112| |db-ncbi|20160708| |db-ncbi|20170707| |db-ncbi|20171212| |db-ncbi|20190121| |db-ncbi|20190709| |db-ncbi|20190805| |db-ncbi|20220131(default)| |db-ncbi|v5.20190517| |db-panther|10.0(default)| |db-panther|13.1| |db-pfam|27.0| |db-pfam|28.0| |db-pfam|30.0| |db-pfam|31.0| |db-pfam|32.0| |db-pfam|33.0| |db-pfam|33.1| |db-pfam|34.0| |db-pfam|35.0(default)| |db-pfam|2013-03-14| |db-pfam|2015-07-27| |db-pfam|2016-09-15| |db-pfam|2017-06-11| |db-pfam|2018-10-18| |db-pfam|2020-03-19| |db-pfam|2020-05-05| |db-pfam|2021-03-19| |db-pfam|2021-11-25| |db-priam|mar15(default)| |db-rfam|11.0| |db-rfam|14.5| |db-rfam|14.7| |db-swissprot|2021_01| |db-trinotate|r20150720(default)| |db-uniprot|2014_12| |db-uniprot|2015_01| |db-uniprot|2015_02| |db-uniprot|2015_03| |db-uniprot|2015_04| |db-uniprot|2015_05| |db-uniprot|2016_11| |db-uniprot|2018_03(default)| |ddradseqtools|0.45| |dedalus|79bbb80| |deepte|122520-cpu| |deepte|122520-gpu| |deeptools|3.5.1| |deML|1.1.3| |dftbplus|23.1| |dgenies|1.4.0| |diamond|2.0.13| |diamond|2.0.14| |diamond|2.1.0| |diamond|2.1.7| |dislin|11.5| |dorado|0.3.0| |dorado|0.4.0| |dssp|3.0.0| |du-dust|0.7.5| |du-dust|0.8.6| |edta|2.1.0| |edta|2.1.0-fix| |eggnog-mapper|2.1.7| |eggnog-mapper|2.1.9| |elpa|2020.11.001_oneapi-2022.1.2.146| |elsi|2.9.1| |emboss|6.6.0| |entap|0.10.8-beta| |espresso|7.0_oneapi-2022.1.2.146| |ete3|3.1.2| |exonerate|2.2.0| |exonerate|2.4.0| |extra|1| |fasta|36.3.8h| |fastani|1.33| |fastme|2.1.6.3| |fastp|0.23.2| |fastq-screen|v0.15.2| |fastq_demux|0.0.1| |fastqc|0.11.9| |faststructure|1.0.1| |fasttree|2.1.11| |fastx_toolkit|0.0.13| |ffmpeg|5.0| |fftw|2.1.5| |fftw|3.3.10| |figaro|0.1| |filtlong|0.2.1| |firefox|115.0.2| |Flye|2.9| |freebayes|1.3.6| |freefem|4.10| |funannotate|1.8(default)| |funannotate|dev_live| |funannotate|development| |funannotate2|2.0alpha| |fzf|0.28.0| |g_mmpbsa|1.6| |gadget2|2.0.7| |gadgetviewer|1.1.2| |gap|4.11.1| |gatk|3| |gatk|3.3-0| |gatk|3.3.0| |gatk|3.4-0| |gatk|3.4-46| |gatk|3.4.0| |gatk|3.4.46| |gatk|3.5| |gatk|3.6| |gatk|3.7| |gatk|3.8| |gatk|4| |gatk|4.0.1.2| |gatk|4.0.4.0| |gatk|4.0.8.1| |gatk|4.0.12.0| |gatk|4.1.1.0| |gatk|4.1.4.1| |gatk|4.1.8.1| |gatk|4.2.0.0| |gatk|4.2.5.0| |gatk|4.2.6.1| |gatk|4.3.0.0| |gatk|4.4.0.0| |gaussian|16| |gaussian|16_AVX2| |gaussian|16_SSE4| |gcc|6.5.0| |gcc|9.2.1| |gcloudsdk|387.0.0| |gcloudsdk|421.0.0| |gcloudsdk|422.0.0| |gemma|0.98.5| |genemarkESET|4.69_lic| |genemarkESET|4.71_lic| |genomemapper|0.4.4| |genometools|1.6.2| |getorganelle|1.7.6| |git-lfs|3.2.0| |globusconnect|3.2.0| |gmap|2021-12-17| |gmap|2023-04-28| |gmt|4.5.8| |gocryptfs|2.2.1| |golang|1.17.6| |gridss|2.13.2| |gromacs|2022.3| |gsel_vec|0.0.1| |gtdbtk|2.0.0| |gtdbtk|2.1.0| |gtdbtk|2.2.4| |gtdbtk|2.3.0| |gtotree|1.7.10| |gtotree|1.8.1| |guppy|5.0.11| |guppy|5.0.11-gpu| |guppy|6.0.1| |guppy|6.0.1-gpu| |guppy|6.1.7| |guppy|6.1.7-gpu| |guppy|6.2.1| |guppy|6.2.1-gpu| |guppy|6.3.4| |guppy|6.3.4-gpu| |guppy|6.3.7| |guppy|6.3.7-gpu| |guppy|6.3.8| |guppy|6.3.8-gpu| |guppy|6.4.2| |guppy|6.4.2-gpu| |guppy|6.4.6| |guppy|6.4.6-gpu| |guppy|6.4.8| |guppy|6.4.8-gpu| |guppy|6.5.7| |guppy|6.5.7-gpu| |gurobi|10.0.0| |gutsmash|5.0.0| |hal|2.2| |hdf5|1.8.22_oneapi-2022.3.0.8767| |hdf5|1.8.22_openmpi| |hdf5|1.10.9_openmpi| |hdf5|1.12.1| |hdf5|1.12.1_oneapi-2022.1.2.146| |hdf5|1.12.2| |hdf5|1.12.2_oneapi-2022.3.0.8767| |hic-pro|3.1.0| |hifiasm|0.19.7| |hisat2|2.1.0| |hisat2|2.2.0| |hisat2|2.2.1| |hmmer|1.8.5| |hmmer|2| |hmmer|2.3.2| |hmmer|3| |hmmer|3.3.2| |hmmer|3.3.2-mpi| |homer|4.11| |hpcc_user_utils|current| |hpcc_workshop|1.0| |hpcc_workshop|2.0| |htslib|1.14| |htslib|1.15| |htslib|1.16| |htslib|1.17| |htslib|1.18| |hub|2.14.2| |i-adhore|3.0| |igv|2.12.3| |infernal|1.1.4| |interproscan|5.54-87.0| |interproscan|5.55-88.0| |interproscan|5.60-92.0| |interproscan|5.62-94.0| |iprscan|5.54-87.0| |iprscan|5.55-88.0| |iprscan|5.60-92.0| |iprscan|5.62-94.0| |IQ-TREE|1.6.12| |IQ-TREE|2.1.1| |IQ-TREE|2.1.1_mpi| |IQ-TREE|2.1.3| |IQ-TREE|2.2.0| |IQ-TREE|2.2.1| |IQ-TREE|2.2.2.6| |iqtree|1.6.12| |iqtree|2.1.1| |iqtree|2.1.1_mpi| |iqtree|2.1.3| |iqtree|2.2.0| |iqtree|2.2.1| |iqtree|2.2.2.6| |isa-l|8b7c1b8| |itpp|4.3.1| |ITSx|1.1.3| |itsxpress|1.8| |iupred|3| |jags|4.3.0| |java|17.0.2| |jbrowse|1.16.8| |jbrowse2|1.6.7| |jellyfish|2.3.0| |jemalloc|5.2.1| |jorg|1.0.0| |juicebox|2.13.07| |julia|1.7.2| |julia|1.8.4| |jupyterhub|4.0.2| |jupyterlab|3.3.1| |jupyterlab|4.0.1| |kallisto|0.46.1| |kallisto|0.48.0| |KEGG-Decoder|1.3| |kent-tools|427| |kofamscan|1.3.0| |kraken2|2.1.2| |kraken2|2.1.3| |KronaTools|2.8.1| |last|1352| |last|1453| |lastz|1.04.22| |less|608| |libdeflate|1.10| |libdeflate|1.14| |libdeflate|1.17| |liftoff|1.6.3| |LINKS|1.8.4| |longranger|2.2.2| |longstitch|1.0.3| |lsaBGC|1.0| |ltr_finder|1.0.7| |ltr_finder_parallel|1.1| |ltr_retriever|2.9.1| |macs2|2.2.6| |macs2|2.2.7| |macs3|3.0.0a7| |mafft|7.490| |mafft|7.505| |mash|2.3| |masurca|4.0.9| |masurca|4.1.0| |mathematica|12.3.1| |matlab|R2021b| |mcclintock|2.0.0| |mcl|14-137| |MCScanX|r51_g97e74f4| |medaka|1.6| |medaka|1.6-gpu| |megahit|1.2.9| |megalodon|2.5.0| |megalodon|2.5.0-gpu| |meme|5.4.1| |metabat2|2.15| |metahipmer|v2.1.0.2| |metahipmer|v2.1.0.2-gpu| |metaphor|1.7.7| |methylmap|0.3.4| |miniasm|0.3| |miniconda3|py39_4.10.3| |miniconda3|py39_4.12.0| |minimap2|2.24| |miniprot|0.2| |mira-assembler|5rc2| |mirage|2.0.0| |MMseqs2|13-45111| |mmseqs2|13-45111| |mmv|2.3| |modeltest-ng|0.1.7| |mosdepth|0.3.3| |mosh|1.4.0| |mothur|1.47.0| |mpich|4.0.1| |mpich|4.0.1_gcc-9.2.1| |mpich|4.0.1_gcc-9.2.1_slurm23(default)| |mpich|4.0.1_slurm23| |mrbayes|3.2.7| |mrbayes|3.2.7-sse| |mummer|3.23| |mummer|4.0.0| |muscle|3.8.31| |muscle|5.1| |mutt|2.1.5| |mutt|2.2.9| |mzmine|3.7.0| |nanomethphase|1.0| |nasm|2.15.05| |ncbi-asn_tools|2022-04-25| |ncbi-blast|2.2.22+| |ncbi-blast|2.2.25+| |ncbi-blast|2.2.26| |ncbi-blast|2.2.26+| |ncbi-blast|2.2.29+| |ncbi-blast|2.2.30+| |ncbi-blast|2.2.31+| |ncbi-blast|2.3.0+| |ncbi-blast|2.4.0+| |ncbi-blast|2.5.0+| |ncbi-blast|2.6.0+| |ncbi-blast|2.7.1+| |ncbi-blast|2.8.0+| |ncbi-blast|2.8.1+| |ncbi-blast|2.9.0+| |ncbi-blast|2.11.0+| |ncbi-blast|2.12.0+| |ncbi-blast|2.13.0+| |ncbi-blast|2.14.0+| |ncbi-blast|2.14.1+| |ncbi-fcs|0.4.0| |ncbi-ngs-tools|2.11.2| |ncbi-rmblast|2.11.0| |ncbi-rmblast|2.13.0| |ncbi-rmblast|2.14.0| |ncbi-table2asn|2022-06-10| |ncbi-table2asn|2023-07-13| |ncbi_datasets|13.4.0| |ncbi_datasets|14.10.0| |ncbi_datasets|15.11.10| |ncbi_edirect|16.8.20220329| |nccl|2.18.1-1| |NECAT|0.0.1| |neovim|0.6.0| |netcdf-c|4.4.4.1_oneapi-2022.3.0.8767| |netcdf-c|4.8.1_oneapi-2022.1.2.146| |netcdf-c|4.9.0_oneapi-2022.3.0.8767| |netcdf-c|4.9.0_openmpi-4.1.2| |netcdf-fortran|4.4.4_oneapi-2022.3.0.8767| |netcdf-fortran|4.5.4_onaapi-2022.1.2.146| |netcdf-fortran|4.6.0_oneapi-2022.3.0.8767| |netcdf-fortran|4.6.0_openmpi-4.1.2| |netlogo|6.3.0| |NextDenovo|2.5.0| |nextflow|23.04| |nextflow|23.08| |NextPolish|1.4.0| |NextPolish|1.4.1| |nf-core|2.9| |ninja|1.11.1| |nQuire|2018-04-05-a990a88| |oneapi|2022.1.2.146| |oneapi|2022.3.0.8767(default)| |openbabel|3.1.1| |openmpi|4.1.2| |openmpi|4.1.2-slurm-19.05.0| |openmpi|4.1.2_slurm-21.08.5| |openmpi|4.1.2_slurm-21.08.5_mpi1-compat| |openmpi|4.1.2_slurm-23.02.2_mpi1-compat(default)| |orca|5.0.4| |orthofinder|2.5.4| |osg-wn-client|3.6.220426-1| |packmol|v20.14.2| |palemoon|32.3.1| |pandoc|2.17.1.1| |parallel-fastq-dump|0.6.7| |parallel|20220122| |PASA|2.5.2| |pastis|62123b5| |pathracer|2020-12-20| |paup|4a168| |PBX|0.2.2| |pbzip2|1.1.13| |pear|0.9.6| |pear|0.9.11| |phame|1.0.4| |phasegenomics|2022-06| |phobius|1.01| |phred-phrap-consed|0.990329| |phykit|1.11| |phyling|2.0| |phyloFlash|3.4| |phyml|3.3.20220715| |phyml|3.3.20220715-mpi| |picard|2.26.11| |pilon|1.24| |pixy|1.2.7| |plass|4.1-live| |plink|1.90b6.25| |plumed|2.9.0| |pmix|3.1.3rc2| |pnetcdf|1.3.1_oneapi-2022.3.0.8767| |pnetcdf|1.3.1_openmpi-4.1.2-mpi1-compat| |pnetcdf|1.12.3_oneapi-2022.3.0.8767| |pnetcdf|1.12.3_openmpi-4.1.2| |pod5|0.0.41| |pod5|0.2.0| |polypolish|0.5.0| |primer3|2.6.1| |prodigal|2.6.3| |prokka|1.14.5| |protobuf|v23.4| |prymetime|0.2| |purge_dups|1.2.6| |purge_haplotigs|1.1.2| |pychopper|2.7.2| |pyrodigal-gv|0.2.0| |pyvcf|0.6.8| |qiime2|2022.2| |qiime2|2022.11| |qiime2|2023.5| |quast|5.1.0rc1| |quickmerge|0.3| |r-spieceasi|1.1.1| |R|4.1.2| |R|4.1.3| |R|4.2.0| |R|4.2.2| |R|4.3.0(default)| |racon|1.5.0| |racon|1.5.0-gpu| |RADinitio|1.1.1| |ragtag|2.1.0| |raisd|v2.9| |raven|1.8.1| |raven|1.8.1-gpu| |raxml-ng|1.1.0| |raxml-ng|1.2.0| |RAxML|8.2.12| |raxml|8.2.12| |RAxML_NG|1.1.0| |RAxML_NG|1.2.0| |rclone|1.58.0| |rclone|1.59.0| |rclone|1.63.0| |REDUCE_suite|2.2| |reduce_suite|2.2| |relocate2|2.0.1| |RepeatMasker|4-1-2| |RepeatMasker|4-1-4| |RepeatMasker|4-1-5| |RepeatModeler|2.0.3| |RepeatModeler|2.0.4| |RepeatModeler|2.0.5| |rmate|1.5.10| |rnaz|2.1.1| |root|6.26.4| |rsem|1.3.3| |rstudio-server|2022.02.0-443| |rstudio-server|2023.09.1-494| |ruby|2.7.5| |ruby|3.1.1| |run_dbcan|3.0| |run_dbcan|4.0| |salmon|1.7.0| |SALSA|2.3| |samblaster|0.1.26| |samtools|1.14| |samtools|1.16| |samtools|1.17| |samtools|1.18| |seqkit|2.4.0| |seqtk|1.3| |seqtk|1.4| |shore|0.9.3| |shoremap|v3.8| |shovill|1.1.0| |signalp|3| |signalp|3.0| |signalp|4| |signalp|4.1c| |signalp|5| |signalp|5.0b| |signalp|6| |signalp|6-gpu| |signalp|6.0g(default)| |signalp|6.0g-gpu| |signalp|6.0h| |signalp|6.0h-gpu| |singularity-ce|3.9.3| |singularity|3.9.3| |sirius|5.8.1| |slow5tools|0.7.0| |slurm-drmaa|1.1.3| |slurm|19.05.0| |slurm|21.08.5| |slurm|21.08.8| |slurm|23.02.2(default)| |slurm|23.02.4| |snakemake|7.14| |snakemake|7.18| |snpEff|4.1G| |snpEff|4.1K| |snpEff|4.3m| |snpEff|4.3P| |snpEff|4.3r| |snpEff|4.3t| |snpEff|5.0e| |snpEff|5.1| |sourmash|4.6.1| |spades|3.12.0| |spades|3.15.4| |sparsehash|2.0.4| |spart|1.5.0| |sratoolkit|3.0.0| |srnascanner|latest| |sspace|3.0| |stacks|2.60| |star|2.7.10a| |star|2.7.10b| |star|2.7.11a| |stata|16| |stata|18| |stringtie|2.2.1| |subopt-kaks|1.0.0| |subread|2.0.3| |subread|2.0.6| |swarm|3.1.3| |syri|1.6.3| |tbb|2020.3| |tbb|2021.5.0| |tbb|2021.6.0| |tcoffee|13.45.65| |texlive|20210325| |texlive|20220403| |tidk|0.2.1| |tmhmm|2.0c| |tmux|3.3(default)| |tmux|3.3a| |tophat|2.1.1| |transdecoder|5.5.0| |trf|4.09| |trim_galore|0.6.7| |trimal|1.4.1| |trimmomatic|0.39| |trinity-rnaseq|2.13.2| |trinity-rnaseq|2.13.2_sing| |trinity-rnaseq|2.14.0| |trinity-rnaseq|2.15.1| |trinotate|3.2.2| |trnascan-se|2.0.9| |unicycler|0.5.0| |unimap|0.1| |upcxx|2020.3.2| |upcxx|2020.3.2-gpu| |upcxx|2023.3.0| |upcxx|2023.3.0-gpu| |usearch|8| |usearch|8.0.1623_32bit| |usearch|8.1.1861_32bit| |usearch|9| |usearch|9.0.2132_i86linux32| |usearch|9.1.13_i86linux32| |usearch|9.2.64_i86linux32| |usearch|10| |usearch|10.0.240_i86linux32| |usearch|11| |usearch|11.0.667_i86linux32| |usher|0.5.6| |valgrind|3.18.1| |vapid|1.2| |vasp|5.4.1_oneapi-2022.1.2.146| |vcftools|0.1.16-18| |veba|1.0.0-annotate| |veba|1.0.0-assembly| |veba|1.0.0-binning-eukaryotic| |veba|1.0.0-binning-prokaryotic| |veba|1.0.0-binning-viral| |veba|1.0.0-classify| |veba|1.0.0-cluster| |veba|1.0.0-database| |veba|1.0.0-mapping| |veba|1.0.0-phylogeny| |veba|1.0.0-preprocess| |velvet|1.2.10| |verkko|1.3.1| |veryfasttree|4.0.2| |viennarna|2.4.17| |viennarna|2.5.0| |vmd|1.9.3| |vscode|1.76.1| |vscode|1.79.0| |vscode|1.79.2| |vscode|1.82.3| |vsearch|2.21.1| |vt|0.57721| |wannier90|3.1.0_oneapi-2022.1.2.146| |wgd|2| |workspace|scratch| |wtdbg2|2.5| |xpdf|4.03| |xsv|0.13.0| |yq|4.23.1| |yq|4.35.1| |zoem|21-341|