{
  "ai.module": "evolutionary_biology.rtt2",
  "ai.version": "1.0",
  "ai.purpose": "RTT/2 engine layer for Evolutionary Biology: resonance mapping, stabilizers, lineage propagation, and cross-module interactions.",
  "ai.keywords": [
    "evolution",
    "adaptive resonance",
    "lineage",
    "selection",
    "population dynamics",
    "rtt2"
  ],

  "engine": {
    "layer": "RTT/2",
    "description": "Integrates Evolutionary Biology into the RTT resonance substrate, exposing stabilizers, lineage propagation, and cross-module adaptive patterns."
  },

  "resonance": {
    "patterns": [
      {
        "name": "adaptive_resonance_cycle",
        "description": "Variation → selection → inheritance → recurrence across generations forms a stable adaptive loop."
      },
      {
        "name": "fitness_landscape_resonance",
        "description": "Populations resonate with environmental constraints, forming attractor-like adaptive basins."
      },
      {
        "name": "lineage_resonance",
        "description": "Lineage memory stabilizes trait propagation and reduces apparent randomness."
      }
    ],
    "failure_modes": [
      "environmental collapse",
      "loss_of_lineage_memory",
      "runaway_drift",
      "bottleneck-induced decoherence"
    ]
  },

  "stabilizers": {
    "primary": [
      {
        "name": "lineage_memory",
        "description": "Genetic and epigenetic inheritance stabilize adaptive patterns across generations."
      },
      {
        "name": "population_size",
        "description": "Larger populations buffer against drift and maintain adaptive coherence."
      },
      {
        "name": "environmental_consistency",
        "description": "Stable environments reinforce predictable selection gradients."
      }
    ],
    "secondary": [
      {
        "name": "gene_flow",
        "description": "Movement of genetic material between populations stabilizes or destabilizes resonance patterns."
      },
      {
        "name": "ecological_networks",
        "description": "Species interactions shape adaptive pressures and resonance cycles."
      }
    ]
  },

  "lineage_propagation": {
    "mechanisms": [
      "genetic_inheritance",
      "epigenetic_modulation",
      "developmental_constraints"
    ],
    "signals": [
      "trait_stability",
      "heritability_patterns",
      "multi-generational_coherence"
    ],
    "notes": "Lineage propagation is the primary stabilizer of evolutionary resonance across time."
  },

  "cross_module": {
    "interactions": [
      {
        "module": "genetics.rtt2",
        "interaction": "Genetic mechanisms define the substrate for variation and inheritance."
      },
      {
        "module": "ecology.rtt2",
        "interaction": "Environmental pressures shape selection gradients and adaptive resonance."
      },
      {
        "module": "information_theory.rtt2",
        "interaction": "Lineage memory and genetic encoding follow information-theoretic constraints."
      },
      {
        "module": "chaos_theory.rtt2",
        "interaction": "Population dynamics exhibit chaotic behavior under certain conditions."
      }
    ],
    "notes": "Evolutionary resonance propagates across biological, ecological, and informational modules."
  },

  "dimensional_behavior": {
    "R1": "Primitive replicator dynamics; minimal resonance; high stochasticity.",
    "R2": "Genetic and molecular mechanisms partially stabilize adaptive patterns.",
    "R3": "Full population-level adaptive resonance; stable selection and lineage propagation."
  },

  "coherence": {
    "markers": [
      "predictable selection gradients",
      "stable lineage propagation",
      "adaptive trait convergence",
      "multi-generational resonance cycles"
    ],
    "instability_signals": [
      "environmental discontinuity",
      "lineage collapse",
      "excessive drift",
      "population fragmentation"
    ]
  }
}