# manually curated from Ecocyc on 10/1/19: https://ecocyc.org/compound?orgid=ECOLI&id=GUANOSINE-5DP-3DP#tab=REG # duplicate entries are not kept unless directionality differs # some genes replaced manually with synonyms to match wcm genes (gene vs curated gene columns) "Gene" "ppGpp" "DksA-ppGpp" "DksA" "sigma70" "sigmaS" "sigma32" "sigma54" "sigma24" "Curated Gene" "thrL" 1 1 1 "thrL" "thrA" 1 1 1 "thrA" "thrB" 1 1 1 "thrB" "thrC" 1 1 1 "thrC" "sgrR" 1 1 1 "sgrR" "sroA" 1 1 1 "sroA" "tbpA" 1 1 1 "thiB" "thiP" 1 1 1 "thiP" "thiQ" 1 1 1 "thiQ" "sgrT" 1 1 1 1 "sgrT" "sgrS" 1 1 1 1 "sgrS" "setA" 1 1 1 1 "setA" "leuL" 1 1 "leuL" "leuA" 1 1 "leuA" "leuB" 1 1 "leuB" "leuC" 1 1 "leuC" "leuD" 1 1 "leuD" "leuO" 1 1 "leuO" "ilvI" -1 "ilvI" "ilvH" -1 "ilvH" "ftsQ" 1 1 1 "ftsQ" "ftsA" 1 1 1 "ftsA" "ftsZ" 1 1 1 "ftsZ" "pcnB" -1 -1 1 1 "pcnB" "folK" -1 -1 1 1 "folK" "dksA" -1 -1 -1 1 "dksA" "gluQ" -1 -1 -1 1 "gluQ" "tff" -1 1 "tff" "rpsB" -1 1 "rpsB" "tsf" -1 1 "tsf" "frr" -1 1 "frr" "rrsH" -1 -1 -1 1 1 "rrsH" "ileV" -1 -1 -1 1 1 "ileV" "alaV" -1 -1 -1 1 1 "alaV" "rrlH" -1 -1 -1 1 1 "rrlH" "rrfH" -1 -1 -1 1 1 "rrfH" "yahO" 1 "yahO" "iraP" 1 1 1 "iraP" "yaiA" 1 "yaiA" "aroM" 1 "aroM" "queA" -1 "queA" "tgt" -1 "tgt" "yajC" -1 "yajC" "yajO" 1 "yajO" "bolA" 1 1 1 "bolA" "ybaA" 1 "ybaA" "ybaS" 1 1 "glsA" "ybaT" 1 1 "ybaT" "ybdK" 1 "ybdK" "ybeL" 1 "ybeL" "metT" -1 1 "metT" "leuW" -1 1 "leuW" "glnU" -1 1 "glnU" "glnW" -1 1 "glnW" "metU" -1 1 "metU" "glnV" -1 1 "glnV" "glnX" -1 1 "glnX" "ybgA" 1 1 "ybgA" "phr" 1 1 "phr" "ybgS" 1 "ybgS" "ybhP" 1 "ybhP" "clsB" 1 "clsB" "ybhN" 1 "ybhN" "dps" 1 1 1 "dps" "dacC" 1 1 "dacC" "ybjP" 1 1 "ybjP" "poxB" 1 1 1 "poxB" "cspD" 1 1 "cspD" "infA" -1 "infA" "serW" -1 1 "serW" "lrp" 1 1 "lrp" "ftsK" 1 1 "ftsK" "ycaP" 1 "ycaP" "rmf" 1 "rmf" "yccT" 1 "yccT" "yccU" 1 "yccU" "cbpA" 1 1 "cbpA" "cbpM" 1 1 "cbpM" "agp" 1 "agp" "wrbA" 1 1 "wrbA" "yccJ" 1 1 "yccJ" "csgD" 1 1 1 "csgD" "csgE" 1 1 1 "csgE" "csgF" 1 1 1 "csgF" "csgG" 1 1 1 "csgG" "msyB" 1 1 "msyB" "grxB" 1 1 "grxB" "rluC" -1 "rluC" "ariR" 1 "ariR" "ycgB" 1 "ycgB" "treA" 1 1 "treA" "pth" -1 1 "pth" "ychF" -1 1 "ychF" "ychH" 1 1 "ychH" "tyrT" -1 1 "tyrT" "tyrV" -1 1 "tyrV" "tpr" -1 1 "tpr" "rssB" 1 1 "rssB" "acnA" 1 1 "acnA" "osmB" 1 1 "osmB" "uspE" 1 "uspE" "ydcK" 1 "ydcK" "ydcL" 1 "ydcL" "curA" 1 "curA" "narU" 1 1 "narU" "adhP" 1 "adhP" "sra" 1 1 "sra" "osmC" 1 1 "osmC" "gadB" 1 1 1 "gadB" "gadC" 1 1 1 "gadC" "tam" 1 1 "tam" "ynfD" 1 "ynfD" "sodC" 1 1 "sodC" "cfa" 1 1 1 "cfa" "ynhG" 1 "ldtE" "sufA" 1 1 "sufA" "sufB" 1 1 "sufB" "sufC" 1 1 "sufC" "sufD" 1 1 "sufD" "sufS" 1 1 "sufS" "sufE" 1 1 "sufE" "yniA" 1 "yniA" "katE" 1 1 "katE" "yeaG" 1 1 "yeaG" "yeaH" 1 1 "yeaH" "yeaQ" 1 "yeaQ" "fadD" 1 1 "fadD" "sroD" 1 1 "sroD" "yoaC" 1 1 "yoaC" "yebV" 1 "yebV" "yebF" 1 "yebF" "argS" -1 1 "argS" "uspC" 1 "uspC" "otsB" 1 1 "otsB" "otsA" 1 1 "otsA" "yedP" 1 "yedP" "hchA" 1 1 "hchA" "fbaB" 1 1 "fbaB" "yehE" 1 "yehE" "osmF" 1 1 "osmF" "yehY" 1 1 "yehY" "yehX" 1 1 "yehX" "yehW" 1 1 "yehW" "yohC" 1 "yohC" "yojI" 1 1 "yojI" "elaB" 1 1 "elaB" "argT" -1 1 "argT" "hisJ" -1 1 "hisJ" "hisQ" -1 1 "hisQ" "hisM" -1 1 "hisM" "hisP" -1 1 "hisP" "yfcZ" 1 "yfcZ" "fadL" 1 1 "fadL" "talA" 1 1 1 "talA" "tktB" 1 1 1 "tktB" "hmp" 1 1 1 "hmp" "rpoE" 1 1 1 1 1 "rpoE" "rseA" 1 1 1 1 1 "rseA" "rseB" 1 1 1 1 1 "rseB" "rseC" 1 1 1 1 1 "rseC" "rrsG" -1 -1 -1 1 1 "rrsG" "gltW" -1 -1 -1 1 1 "gltW" "rrlG" -1 -1 -1 1 1 "rrlG" "rrfG" -1 -1 -1 1 1 "rrfG" "csiD" 1 1 "glaH" "lhgO" 1 1 "lhgD" "gabD" 1 1 1 "gabD" "gabT" 1 1 1 "gabT" "gabP" 1 1 1 "gabP" "ygaU" 1 1 "kbp" "yqaE" 1 "yqaE" "csrA" 1 1 1 1 "csrA" "rpoS" -1 1 "rpoS" "mazE" -1 "mazE" "mazF" -1 "mazF" "mazG" -1 "mazG" "relA" 1 1 "relA" "mazE" 1 1 "mazE" "mazF" 1 1 "mazF" "csrB" 1 1 1 1 "csrB" "metZ" -1 1 "metZ" "metW" -1 1 "metW" "metV" -1 1 "metV" "prfB" -1 "prfB" "lysS" -1 "lysS" "speC" -1 1 "speC" "yghA" 1 "yghA" "dkgA" 1 1 "dkgA" "glgS" 1 1 "glgS" "patA" 1 1 1 "patA" "yqjF" 1 "yqjF" "yhbO" 1 "yhbO" "rpsO" -1 "rpsO" "pnp" -1 "pnp" "yhcO" 1 "yhcO" "dusB" -1 -1 1 "dusB" "fis" -1 -1 1 "fis" "rrsD" -1 -1 -1 1 1 "rrsD" "ileU" -1 -1 -1 1 1 "ileU" "alaU" -1 -1 -1 1 1 "alaU" "rrlD" -1 -1 -1 1 1 "rrlD" "rrfD" -1 -1 -1 1 1 "rrfD" "thrV" -1 -1 -1 1 1 "thrV" "rrfF" -1 -1 -1 1 1 "rrfF" "fkpA" 1 1 "fkpA" "crp" -1 "crp" "glgC" 1 1 "glgC" "glgA" 1 1 "glgA" "glgP" 1 1 "glgP" "ggt" 1 "ggt" "yhhA" 1 "yhhA" "livJ" 1 1 1 "livJ" "uspB" 1 1 "uspB" "uspA" 1 1 "uspA" "dtpB" 1 "dtpB" "hdeA" 1 1 1 "hdeA" "hdeB" 1 1 1 "hdeB" "yhiD" 1 1 1 "yhiD" "hdeD" 1 1 1 "hdeD" "gadE" 1 1 "gadE" "gadF" 1 1 "gadF" "mdtE" 1 1 "mdtE" "mdtF" 1 1 "mdtF" "gadX" 1 1 1 "gadX" "gadA" 1 1 1 "gadA" "treF" 1 1 "treF" "yjaG" 1 1 "yjaG" "cspA" -1 1 "cspA" "ivbL" 1 1 "ivbL" "ilvB" 1 1 "ilvB" "ilvN" 1 1 "ilvN" "dnaA" -1 1 "dnaA" "dnaN" -1 1 "dnaN" "recF" -1 1 "recF" "rpmH" -1 "rpmH" "rnpA" -1 "rnpA" "mnmG" -1 1 1 "mnmG" "rsmG" -1 1 1 "rsmG" "mioC" -1 "mioC" "rrsC" -1 -1 -1 1 1 "rrsC" "gltU" -1 -1 -1 1 1 "gltU" "rrlC" -1 -1 -1 1 1 "rrlC" "rrfC" -1 -1 -1 1 1 "rrfC" "ilvL" 1 1 "ilvL" "ilvX" 1 1 "ilvX" "ilvG_1" 1 1 "ilvG" "ilvM" 1 1 "ilvM" "ilvE" 1 1 "ilvE" "ilvD" 1 1 "ilvD" "ilvA" 1 1 "ilvA" "trxA" 1 1 "trxA" "argX" -1 -1 1 1 "argX" "hisR" -1 -1 1 1 "hisR" "leuT" -1 -1 1 1 "leuT" "proM" -1 -1 1 1 "proM" "ysgA" 1 1 "ysgA" "rrsA" -1 -1 -1 1 1 "rrsA" "ileT" -1 -1 -1 1 1 "ileT" "alaT" -1 -1 -1 1 1 "alaT" "rrlA" -1 -1 -1 1 1 "rrlA" "rrfA" -1 -1 -1 1 1 "rrfA" "csrC" 1 1 1 "csrC" "yiiS" 1 1 "yiiS" "uspD" 1 1 "uspD" "rpmE" -1 1 "rpmE" "argH" 1 "argH" "rrsB" -1 -1 -1 1 1 "rrsB" "gltT" -1 -1 -1 1 1 "gltT" "rrlB" -1 -1 -1 1 1 "rrlB" "rrfB" -1 -1 -1 1 1 "rrfB" "thrU" -1 1 "thrU" "tyrU" -1 1 "tyrU" "glyT" -1 1 "glyT" "thrT" -1 1 "thrT" "tufB" -1 1 "tufB" "rrsE" -1 -1 -1 1 1 "rrsE" "gltV" -1 -1 -1 1 1 "gltV" "rrlE" -1 -1 -1 1 1 "rrlE" "rrfE" -1 -1 -1 1 1 "rrfE" "yjbJ" 1 "yjbJ" "qor" 1 "qorA" "cadA" -1 "cadA" "efp" -1 1 "efp" "ecnB" 1 1 "ecnB" "blc" 1 1 "blc" "aidB" 1 1 1 "aidB" "yjfY" 1 "yjfY" "rpsF" -1 1 "rpsF" "priB" -1 1 "priB" "rpsR" -1 1 "rpsR" "rplI" -1 1 "rplI" "cysQ" 1 "cysQ" "pyrL" -1 "pyrL" "pyrB" -1 "pyrB" "pyrI" -1 "pyrI" "yjgH" 1 "yjgH" "argI" 1 1 1 "argI" "leuX" -1 1 "leuX" "fimB" 1 1 1 "fimB" "ytiC" 1 -1 1 "ytiC" "ytiD" 1 -1 1 "ytiD" "idlP" 1 -1 1 1 "idlP" "iraD" 1 -1 1 1 "iraD" "leuV" -1 "leuV" "prfC" -1 "prfC" "osmY" 1 1 1 "osmY" "thrL" 1 1 "thrL" "rpsT" -1 "rpsT" "rybB" 1 1 1 "rybB" "rpsA" -1 1 "rpsA" "ihfB" -1 1 "ihfB" "fabH" -1 "fabH" "fabD" -1 "fabD" "fabG" -1 "fabG" "fadR" -1 1 "fadR" "thrS" -1 "thrS" "infC" -1 1 "infC" "rpmI" -1 1 "rpmI" "rplT" -1 1 "rplT" "pheM" -1 "pheM" "pheS" -1 "pheS" "pheT" -1 "pheT" "ihfA" -1 "ihfA" "dsrA" 1 1 "dsrA" "hisL" 1 "hisL" "hisG" 1 "hisG" "hisD" 1 "hisD" "hisC" 1 "hisC" "hisB" 1 "hisB" "hisH" 1 "hisH" "hisA" 1 "hisA" "hisF" 1 "hisF" "hisI" 1 "hisI" "rplY" -1 1 "rplY" "rpsP" -1 1 "rpsP" "rimM" -1 1 "rimM" "trmD" -1 1 "trmD" "rplS" -1 1 "rplS" "rpoS" 1 "rpoS" "rpsU" -1 1 "rpsU" "dnaG" -1 1 "dnaG" "rpoD" -1 1 "rpoD" "rplU" -1 1 "rplU" "rpmA" -1 1 "rpmA" "yhbE" -1 1 "yhbE" "obgE" -1 1 "obgE" "rplM" -1 1 "rplM" "rpsI" -1 1 "rpsI" "rpsM" -1 1 "rpsM" "rpsK" -1 1 "rpsK" "rpsD" -1 1 "rpsD" "rpoA" -1 1 "rpoA" "rplQ" -1 1 "rplQ" "rplN" -1 "rplN" "rplX" -1 "rplX" "rplE" -1 "rplE" "rpsN" -1 "rpsN" "rpsH" -1 "rpsH" "rplF" -1 "rplF" "rplR" -1 "rplR" "rpsE" -1 "rpsE" "rpmD" -1 "rpmD" "rplO" -1 "rplO" "secY" -1 "secY" "rpmJ" -1 "rpmJ" "rpsJ" -1 1 "rpsJ" "rplC" -1 1 "rplC" "rplD" -1 1 "rplD" "rplW" -1 1 "rplW" "rplB" -1 1 "rplB" "rpsS" -1 1 "rpsS" "rplV" -1 1 "rplV" "rpsC" -1 1 "rpsC" "rplP" -1 1 "rplP" "rpmC" -1 1 "rpmC" "rpsQ" -1 1 "rpsQ" "rpsL" -1 "rpsL" "rpsG" -1 "rpsG" "fusA" -1 "fusA" "tufA" -1 "tufA" "rpmB" -1 "rpmB" "rpmG" -1 "rpmG" "mutM" -1 "mutM" "rpoZ" -1 1 "rpoZ" "spoT" -1 1 "spoT" "trmH" -1 1 "trmH" "recG" -1 1 "recG" "rplK" -1 "rplK" "rplA" -1 "rplA" "rplJ" -1 "rplJ" "rplL" -1 "rplL" "rpoB" -1 "rpoB" "rpoC" -1 "rpoC"