{ "meta": { "name": "Vortex Research peptide identity reference", "description": "Sequence, formula, mass, PubChem CID and CAS identity data for compounds Vortex Research publishes lot reports for.", "url": "https://vrtx-research.github.io/peptide-identity-reference/", "generated": "2026-10-22", "license": "CC BY 4.0 (data), MIT (scripts)", "mass_conventions": { "average_mw": "PubChem MolecularWeight as reported (PubChem rounds it). computed.average_mw uses IUPAC 2005 standard atomic weights.", "monoisotopic_mass": "PubChem MonoisotopicMass. computed.monoisotopic_mass uses NIST most-abundant-isotope masses. Charged records: neutral-atom sum, no electron-mass correction (same as PubChem).", "tolerance_da": 0.05 }, "research_use": "Identity reference data for laboratory research materials. Not for human or veterinary use." }, "compounds": [ { "id": "bpc-157", "name": "BPC-157", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no counter-ion", "synonyms": [ "BPC 157", "Bpc157", "Bepecin", "PL-14736" ], "sequence_one_letter": "GEPPPGKPADDAGLV", "sequence_three_letter": "H-Gly-Glu-Pro-Pro-Pro-Gly-Lys-Pro-Ala-Asp-Asp-Ala-Gly-Leu-Val-OH", "residue_count": 15, "modifications": { "n_terminus": "free amine (H-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C62H98N16O22", "average_mw": 1419.5, "monoisotopic_mass": 1418.70415882, "charge": 0, "pubchem_cid": 9941957, "pubchem_title": "Bpc-157", "cas": "137525-51-0", "computed": { "molecular_formula": "C62H98N16O22", "average_mw": 1419.54, "monoisotopic_mass": 1418.7042, "delta_average_mw": 0.0355, "delta_monoisotopic_mass": 4e-8, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [], "vortex_links": [ "https://vortexresearch.net/blog/what-is-bpc-157/", "https://vortexresearch.net/blog/bpc-157-and-tb-500/", "https://vortexresearch.net/coa/" ], "notes": [ "PubChem synonyms for this record include trifluoroacetate-salt names. The formula and masses are for the free peptide without counter-ions." ], "sources": { "pubchem_name_lookups": [ { "name": "BPC-157", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/BPC-157/cids/JSON", "cids": [ 9941957 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/9941957/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/9941957/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/9941957/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "137525-51-0", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/137525-51-0/cids/JSON", "cids": [ 9941957 ] }, "sequence": [ { "source": "PubChem synonym", "value": "Gly-Glu-Pro-Pro-Pro-Gly-Lys-Pro-Ala-Asp-Asp-Ala-Gly-Leu-Val", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/9941957/synonyms/JSON" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "tb-500", "name": "TB-500", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no counter-ion", "synonyms": [ "TB500", "TB 500", "N-Acetyl-L-leucyl-L-lysyl-L-lysyl-L-threonyl-L-alpha-glutamyl-L-threonyl-L-glutamine" ], "sequence_one_letter": "LKKTETQ", "sequence_three_letter": "Ac-Leu-Lys-Lys-Thr-Glu-Thr-Gln-OH", "residue_count": 7, "modifications": { "n_terminus": "N-acetyl (Ac-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C38H68N10O14", "average_mw": 889, "monoisotopic_mass": 888.49164688, "charge": 0, "pubchem_cid": 62707662, "pubchem_title": "Unii-qhk6Z47gtg", "cas": "885340-08-9", "computed": { "molecular_formula": "C38H68N10O14", "average_mw": 889.01, "monoisotopic_mass": 888.4916, "delta_average_mw": 0.0051, "delta_monoisotopic_mass": 2.99e-8, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [ { "label": "LKKTETQ without the N-acetyl group (PubChem title: Fequesetide)", "pubchem_cid": 10169788, "sequence_three_letter": "H-Leu-Lys-Lys-Thr-Glu-Thr-Gln-OH", "molecular_formula": "C36H66N10O13", "average_mw": 847, "monoisotopic_mass": 846.4810822, "computed_formula": "C36H66N10O13", "computed_monoisotopic_mass": 846.4811, "pubchem_match": true, "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/10169788/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" } ], "vortex_links": [ "https://vortexresearch.net/blog/tb-500-vs-thymosin-beta-4/", "https://vortexresearch.net/blog/bpc-157-and-tb-500/", "https://vortexresearch.net/coa/" ], "notes": [ "Naming: \"TB-500\" is a market name, not a systematic one. PubChem CID 62707662 (synonyms TB-500 and TB500; CAS 885340-08-9) is Ac-LKKTETQ-OH, the N-acetylated heptapeptide matching residues 17-23 of the mature 43-residue thymosin beta-4 chain (numbering as in UniProt P62328 after removal of the initiator methionine).", "Some supplier listings attach the full thymosin beta-4 identity (CAS 77591-33-4, C212H350N56O78S, about 4963 g/mol) to the name TB-500. That is a different molecule; it has its own row (thymosin-beta-4).", "The same heptapeptide without the N-acetyl group is a separate PubChem record, CID 10169788 (C36H66N10O13), 42.01 Da lighter. See variants." ], "sources": { "pubchem_name_lookups": [ { "name": "TB-500", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/TB-500/cids/JSON", "cids": [ 62707662 ] }, { "name": "TB500", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/TB500/cids/JSON", "cids": [ 62707662 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/62707662/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/62707662/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/62707662/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "885340-08-9", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/885340-08-9/cids/JSON", "cids": [ 62707662 ] }, "sequence": [ { "source": "PubChem synonym", "value": "Ac-Leu-Lys-Lys-Thr-Glu-Thr-Gln-OH", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/62707662/synonyms/JSON" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "thymosin-beta-4", "name": "Thymosin beta-4 (Tβ4)", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no counter-ion", "synonyms": [ "Timbetasin", "Thymosin beta4", "Tbeta4", "Fx Peptide" ], "sequence_one_letter": "SDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES", "sequence_three_letter": "Ac-Ser-Asp-Lys-Pro-Asp-Met-Ala-Glu-Ile-Glu-Lys-Phe-Asp-Lys-Ser-Lys-Leu-Lys-Lys-Thr-Glu-Thr-Gln-Glu-Lys-Asn-Pro-Leu-Pro-Ser-Lys-Glu-Thr-Ile-Glu-Gln-Glu-Lys-Gln-Ala-Gly-Glu-Ser-OH", "residue_count": 43, "modifications": { "n_terminus": "N-acetyl (Ac-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C212H350N56O78S", "average_mw": 4963, "monoisotopic_mass": 4960.4863169, "charge": 0, "pubchem_cid": 16132341, "pubchem_title": "Timbetasin", "cas": "77591-33-4", "computed": { "molecular_formula": "C212H350N56O78S", "average_mw": 4963.44, "monoisotopic_mass": 4960.4863, "delta_average_mw": 0.4408, "delta_monoisotopic_mass": 1.29e-7, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [], "vortex_links": [ "https://vortexresearch.net/blog/tb-500-vs-thymosin-beta-4/", "https://vortexresearch.net/coa/" ], "notes": [ "Sequence source: UniProt P62328 (TYB4_HUMAN). The translated precursor starts with an initiator methionine that is removed; the mature chain is 43 residues (precursor positions 2-44) with an N-acetylated Ser1. Residue numbers in this dataset follow the mature chain.", "UniProt also lists natural acetyl-lysine and phosphorylation sites. The formula and masses here are for the unmodified chain apart from the N-terminal acetyl group, which is what PubChem CID 16132341 records.", "PubChem has two records with this formula: CID 16132341 (title Timbetasin, the INN; stereocentres defined; CAS 77591-33-4) and CID 45382195 (title Thymosin Beta 4, stereocentres not defined, no CAS listed). PubChem name lookup \"Thymosin beta-4\" returns CID 45382195. CID 16132341 is used because the CAS number resolves to it.", "Not the same molecule as TB-500 (row tb-500). Ac-LKKTETQ is residues 17-23 of this chain.", "Resolved: Main record average MW. PubChem reports 4963 (rounded to 0 decimal places); computed 4963.44. The 0.44 Da difference is PubChem's display rounding: the formulas are identical and the monoisotopic masses agree to 1.3e-7 Da." ], "sources": { "pubchem_name_lookups": [ { "name": "Thymosin beta-4", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/Thymosin%20beta-4/cids/JSON", "cids": [ 45382195 ] }, { "name": "Thymosin beta4", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/Thymosin%20beta4/cids/JSON", "cids": [ 16132341 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/16132341/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/16132341/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/16132341/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "77591-33-4", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/77591-33-4/cids/JSON", "cids": [ 16132341 ] }, "sequence": [ { "source": "UniProt P62328", "value": "SDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES", "url": "https://rest.uniprot.org/uniprotkb/P62328.fasta" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "ghk", "name": "GHK (free tripeptide)", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no copper, no counter-ion", "synonyms": [ "Glycyl-L-histidyl-L-lysine", "Gly-His-Lys", "Prezatide", "Tripeptide-1" ], "sequence_one_letter": "GHK", "sequence_three_letter": "H-Gly-His-Lys-OH", "residue_count": 3, "modifications": { "n_terminus": "free amine (H-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C14H24N6O4", "average_mw": 340.38, "monoisotopic_mass": 340.18590327, "charge": 0, "pubchem_cid": 73587, "pubchem_title": "glycyl-L-histidyl-L-lysine", "cas": "49557-75-7", "computed": { "molecular_formula": "C14H24N6O4", "average_mw": 340.38, "monoisotopic_mass": 340.1859, "delta_average_mw": -0.0018, "delta_monoisotopic_mass": 8.38e-9, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [], "vortex_links": [ "https://vortexresearch.net/blog/ghk-cu-peptide/", "https://vortexresearch.net/coa/" ], "notes": [ "This is the copper-free tripeptide. PubChem's synonym list for this record also carries the names \"GHK-Cu\" and \"Copper Peptide\", so a name lookup for \"GHK-Cu\" returns this copper-free record among its results. Match the CID to the material: copper complex = row ghk-cu.", "The CAS-format string 1227510-36-2 appears in this record's synonym list but not in PubChem's CAS section; 49557-75-7 is used.", "PubChem name lookup \"GHK\" returns 2 CIDs (73587, 342538); 73587 is the one used." ], "sources": { "pubchem_name_lookups": [ { "name": "GHK", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/GHK/cids/JSON", "cids": [ 73587, 342538 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/73587/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/73587/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/73587/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "49557-75-7", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/49557-75-7/cids/JSON", "cids": [ 73587 ] }, "sequence": [ { "source": "PubChem synonym", "value": "Gly-his-lys", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/73587/synonyms/JSON" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "ghk-cu", "name": "GHK-Cu (copper complex)", "compound_type": "peptide (metal complex)", "is_peptide": true, "form": "1:1 Cu(II) complex, drawn by PubChem as a cation (charge +1)", "synonyms": [ "Prezatide copper", "Copper tripeptide-1", "GHK-Cu", "GHK copper" ], "sequence_one_letter": "GHK", "sequence_three_letter": "H-Gly-His-Lys-OH", "residue_count": 3, "modifications": { "n_terminus": "free amine (H-)", "c_terminus": "free acid (-OH)", "other": "Cu(II) 1:1 complex, one H removed, charge +1" }, "molecular_formula": "C14H23CuN6O4+", "average_mw": 402.92, "monoisotopic_mass": 402.107675, "charge": 1, "pubchem_cid": 71587328, "pubchem_title": "Prezatide copper", "cas": "89030-95-5", "computed": { "molecular_formula": "C14H23CuN6O4+", "average_mw": 402.92, "monoisotopic_mass": 402.1077, "delta_average_mw": -0.0038, "delta_monoisotopic_mass": 9.66e-7, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [ { "cid": 165429100, "relation": "1:1 Cu complex drawn as a neutral species", "molecular_formula": "C14H22CuN6O4", "average_mw": 401.91, "monoisotopic_mass": 401.09985, "charge": 0, "cas": [], "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165429100/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" }, { "cid": 139035031, "relation": "1:1 Cu complex drawn as an anion", "molecular_formula": "C14H21CuN6O4-", "average_mw": 400.9, "monoisotopic_mass": 400.092025, "charge": -1, "cas": [], "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/139035031/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" }, { "cid": 9831891, "relation": "2:1 GHK:Cu complex (title Bisprezatide copper)", "molecular_formula": "C28H46CuN12O8", "average_mw": 742.3, "monoisotopic_mass": 741.285754, "charge": 0, "cas": [ "130120-56-8", "300801-03-0" ], "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/9831891/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" }, { "cid": 133697840, "relation": "two GHK molecules plus copper as a mixture record (title GHK-Cu)", "molecular_formula": "C28H48CuN12O8", "average_mw": 744.3, "monoisotopic_mass": 743.301404, "charge": 0, "cas": [ "300801-03-0" ], "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/133697840/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" } ], "variants": [], "vortex_links": [ "https://vortexresearch.net/blog/ghk-cu-peptide/", "https://vortexresearch.net/coa/" ], "notes": [ "CAS 89030-95-5 resolves to PubChem CID 71587328 (title Prezatide copper), which draws the 1:1 complex as a cation: GHK minus one proton plus Cu, overall charge +1, C14H23CuN6O4+.", "PubChem holds several other GHK-copper records that differ in copper ratio and protonation (see related_pubchem_records), so \"GHK-Cu\" has no single formula or molecular weight. The value that applies to a solid material depends on the copper ratio, protonation state and counter-ions, which the lot report or supplier should state.", "The copper-free tripeptide is row ghk (CID 73587, CAS 49557-75-7).", "FLAG (PubChem data, not this row): CID 71587328 is drawn as the singly deprotonated cation (C14H23CuN6O4+), while several of its synonyms, e.g. \"Copper, (N2-(N-glycyl-L-histidyl)-L-lysinato(2-))-\", name the doubly deprotonated neutral complex (C14H22CuN6O4, the formula of CID 165429100). The two differ by one hydrogen (1.008 Da).", "PubChem name lookup \"GHK-Cu\" returns 6 CIDs (139035031, 9831891, 73587, 71587328, 133697840, 165429100); 71587328 is the one used." ], "sources": { "pubchem_name_lookups": [ { "name": "GHK-Cu", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/GHK-Cu/cids/JSON", "cids": [ 139035031, 9831891, 73587, 71587328, 133697840, 165429100 ] }, { "name": "Prezatide copper", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/Prezatide%20copper/cids/JSON", "cids": [ 71587328 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/71587328/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/71587328/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/71587328/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "89030-95-5", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/89030-95-5/cids/JSON", "cids": [ 71587328 ] }, "sequence": [ { "source": "PubChem synonym (systematic name)", "value": "Copper, (N2-(N-glycyl-L-histidyl)-L-lysinato(2-))-", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/71587328/synonyms/JSON" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "kpv", "name": "KPV", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no counter-ion", "synonyms": [ "Lys-Pro-Val", "L-Lysyl-L-prolyl-L-valine", "alpha-MSH (11-13) (free acid)" ], "sequence_one_letter": "KPV", "sequence_three_letter": "H-Lys-Pro-Val-OH", "residue_count": 3, "modifications": { "n_terminus": "free amine (H-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C16H30N4O4", "average_mw": 342.43, "monoisotopic_mass": 342.22670545, "charge": 0, "pubchem_cid": 125672, "pubchem_title": "Msh (11-13)", "cas": "67727-97-3", "computed": { "molecular_formula": "C16H30N4O4", "average_mw": 342.43, "monoisotopic_mass": 342.2267, "delta_average_mw": 0.0038, "delta_monoisotopic_mass": 1.29e-8, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [], "vortex_links": [ "https://vortexresearch.net/coa/" ], "notes": [ "PubChem name lookup \"KPV\" returns CID 13294447, which is an unrelated compound (2-oxo-5-phenylpentanoic acid, C11H12O3). The tripeptide Lys-Pro-Val is CID 125672, which CAS 67727-97-3 resolves to. Do not resolve this compound by the bare name \"KPV\".", "KPV matches residues 11-13 of alpha-MSH. In alpha-MSH itself the C-terminal valine is amidated (UniProt P01189, \"Valine amide\"); the PubChem KPV record and its synonyms (H-Lys-Pro-Val-OH, \"alpha-MSH (11-13) (free acid)\") describe the free acid, which is what this row gives." ], "sources": { "pubchem_name_lookups": [ { "name": "KPV", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/KPV/cids/JSON", "cids": [ 13294447 ] }, { "name": "Lys-Pro-Val", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/Lys-Pro-Val/cids/JSON", "cids": [ 125672 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/125672/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/125672/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/125672/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "67727-97-3", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/67727-97-3/cids/JSON", "cids": [ 125672 ] }, "sequence": [ { "source": "PubChem synonym", "value": "Lys-pro-val", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/125672/synonyms/JSON" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "mots-c", "name": "MOTS-c", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no counter-ion", "synonyms": [ "Mots-c", "H-MRWQEMGYIFYPRKLR-OH" ], "sequence_one_letter": "MRWQEMGYIFYPRKLR", "sequence_three_letter": "H-Met-Arg-Trp-Gln-Glu-Met-Gly-Tyr-Ile-Phe-Tyr-Pro-Arg-Lys-Leu-Arg-OH", "residue_count": 16, "modifications": { "n_terminus": "free amine (H-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C101H152N28O22S2", "average_mw": 2174.6, "monoisotopic_mass": 2173.1077409, "charge": 0, "pubchem_cid": 146675088, "pubchem_title": "Mots-c", "cas": "1627580-64-6", "computed": { "molecular_formula": "C101H152N28O22S2", "average_mw": 2174.59, "monoisotopic_mass": 2173.1077, "delta_average_mw": -0.008, "delta_monoisotopic_mass": 1.02e-7, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [ { "cid": 164946842, "relation": "salt record titled as the tris-acetic-acid form (peptide + 3 C2H4O2)", "molecular_formula": "C107H164N28O28S2", "average_mw": 2354.8, "monoisotopic_mass": 2353.171129, "charge": 0, "cas": [ "1627580-64-6" ], "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/164946842/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "formula_check": "matches main record + C6H12O6" }, { "cid": 172641109, "relation": "salt record titled \"Mots-C acetate\"; its formula is the peptide + 3 CF3COOH (trifluoroacetate), not acetate", "molecular_formula": "C107H155F9N28O28S2", "average_mw": 2516.7, "monoisotopic_mass": 2515.0863322, "charge": 0, "cas": [ "1627580-64-6" ], "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641109/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "formula_check": "matches main record + C6H3F9O6" } ], "variants": [], "vortex_links": [ "https://vortexresearch.net/coa/" ], "notes": [ "Length: UniProt A0A0C5B5G6 (gene MT-RNR1) and PubChem CID 146675088 both give 16 residues, MRWQEMGYIFYPRKLR. No source reviewed for this dataset gives a different length.", "CAS 1627580-64-6 resolves to three PubChem records: the free peptide (CID 146675088, used here) and two salt records. FLAG (PubChem data, not this row): CID 172641109 is titled \"Mots-C acetate\", but its formula (C107H155F9N28O28S2) equals the free peptide plus three trifluoroacetic acid units, so the title and formula of that record disagree. Not used." ], "sources": { "pubchem_name_lookups": [ { "name": "MOTS-c", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/MOTS-c/cids/JSON", "cids": [ 146675088 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/146675088/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/146675088/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/146675088/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "1627580-64-6", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/1627580-64-6/cids/JSON", "cids": [ 146675088, 164946842, 172641109 ] }, "sequence": [ { "source": "PubChem synonym", "value": "H-MRWQEMGYIFYPRKLR-OH", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/146675088/synonyms/JSON" }, { "source": "UniProt A0A0C5B5G6", "value": "MRWQEMGYIFYPRKLR", "url": "https://rest.uniprot.org/uniprotkb/A0A0C5B5G6.fasta" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "selank", "name": "Selank", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no counter-ion", "synonyms": [ "TP-7", "Thr-Lys-Pro-Arg-Pro-Gly-Pro", "Selanc" ], "sequence_one_letter": "TKPRPGP", "sequence_three_letter": "H-Thr-Lys-Pro-Arg-Pro-Gly-Pro-OH", "residue_count": 7, "modifications": { "n_terminus": "free amine (H-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C33H57N11O9", "average_mw": 751.9, "monoisotopic_mass": 751.43407244, "charge": 0, "pubchem_cid": 11765600, "pubchem_title": "Selank", "cas": "129954-34-3", "computed": { "molecular_formula": "C33H57N11O9", "average_mw": 751.87, "monoisotopic_mass": 751.4341, "delta_average_mw": -0.026, "delta_monoisotopic_mass": 2.2e-8, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [ { "label": "N-acetyl Selank (Ac-TKPRPGP-OH)", "pubchem_cid": 133082488, "sequence_three_letter": "Ac-Thr-Lys-Pro-Arg-Pro-Gly-Pro-OH", "molecular_formula": "C35H59N11O10", "average_mw": 793.9, "monoisotopic_mass": 793.44463712, "computed_formula": "C35H59N11O10", "computed_monoisotopic_mass": 793.4446, "pubchem_match": true, "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/133082488/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" } ], "vortex_links": [ "https://vortexresearch.net/coa/" ], "notes": [ "Selank is the tuftsin sequence TKPR (PubChem CID 156080, H-Thr-Lys-Pro-Arg-OH) extended by Pro-Gly-Pro.", "Variant names exist. \"N-Acetyl Selank\" is PubChem CID 133082488 (Ac-TKPRPGP-OH, C35H59N11O10, +42.01 Da; C-terminal free acid per its IUPAC name). The name \"N-Acetyl Selank Amidate\" has no PubChem record (lookup returns not found), so no formula is given for it here. A material sold under a variant name is a different molecule from the Selank in this row." ], "sources": { "pubchem_name_lookups": [ { "name": "Selank", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/Selank/cids/JSON", "cids": [ 11765600 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/11765600/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/11765600/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/11765600/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "129954-34-3", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/129954-34-3/cids/JSON", "cids": [ 11765600 ] }, "sequence": [ { "source": "PubChem synonym", "value": "Thr-Lys-Pro-Arg-Pro-Gly-Pro", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/11765600/synonyms/JSON" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "semax", "name": "Semax", "compound_type": "peptide", "is_peptide": true, "form": "free peptide, no counter-ion", "synonyms": [ "ACTH (4-7), Pro-Gly-Pro-", "Met-Glu-His-Phe-Pro-Gly-Pro", "MEHFPGP" ], "sequence_one_letter": "MEHFPGP", "sequence_three_letter": "H-Met-Glu-His-Phe-Pro-Gly-Pro-OH", "residue_count": 7, "modifications": { "n_terminus": "free amine (H-)", "c_terminus": "free acid (-OH)", "other": null }, "molecular_formula": "C37H51N9O10S", "average_mw": 813.9, "monoisotopic_mass": 813.34796003, "charge": 0, "pubchem_cid": 9811102, "pubchem_title": "ACTH (4-7), Pro-Gly-Pro-", "cas": "80714-61-0", "computed": { "molecular_formula": "C37H51N9O10S", "average_mw": 813.92, "monoisotopic_mass": 813.348, "delta_average_mw": 0.0201, "delta_monoisotopic_mass": 2.37e-8, "basis": "sequence + modifications (scripts/mass.js)" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [ { "label": "N-acetyl Semax amidate (Ac-MEHFPGP-NH2)", "pubchem_cid": 172638603, "sequence_three_letter": "Ac-Met-Glu-His-Phe-Pro-Gly-Pro-NH2", "molecular_formula": "C39H54N10O10S", "average_mw": 855, "monoisotopic_mass": 854.37450913, "computed_formula": "C39H54N10O10S", "computed_monoisotopic_mass": 854.3745, "pubchem_match": true, "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172638603/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" } ], "vortex_links": [ "https://vortexresearch.net/coa/" ], "notes": [ "Semax is ACTH residues 4-7 (MEHF) extended by Pro-Gly-Pro, as PubChem's synonym \"ACTH (4-7), Pro-Gly-Pro-\" states.", "Variant names exist. \"N-Acetyl Semax Amidate\" is PubChem CID 172638603 (Ac-MEHFPGP-NH2, C39H54N10O10S, 854.37 Da monoisotopic). The shorter name \"N-Acetyl Semax\" resolves to that same amidated record in PubChem, so the two names are not distinguished there. A material sold under a variant name is a different molecule from the Semax in this row." ], "sources": { "pubchem_name_lookups": [ { "name": "Semax", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/Semax/cids/JSON", "cids": [ 9811102 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/9811102/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/9811102/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/9811102/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "80714-61-0", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/80714-61-0/cids/JSON", "cids": [ 9811102 ] }, "sequence": [ { "source": "PubChem synonym", "value": "MEHFPGP", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/9811102/synonyms/JSON" } ], "sequence_note": "Modifications follow the same sources; the formula check below confirms them against PubChem." } }, { "id": "nad", "name": "NAD+", "compound_type": "small molecule (non-peptide)", "is_peptide": false, "form": "neutral inner-salt form (PubChem title Nadide)", "synonyms": [ "Nadide", "beta-NAD", "nicotinamide adenine dinucleotide", "diphosphopyridine nucleotide" ], "sequence_one_letter": null, "sequence_three_letter": null, "residue_count": null, "modifications": null, "molecular_formula": "C21H27N7O14P2", "average_mw": 663.4, "monoisotopic_mass": 663.10912256, "charge": 0, "pubchem_cid": 5892, "pubchem_title": "Nadide", "cas": "53-84-9", "computed": { "molecular_formula": "C21H27N7O14P2", "average_mw": 663.43, "monoisotopic_mass": 663.1091, "delta_average_mw": 0.0251, "delta_monoisotopic_mass": 1.2e-8, "basis": "PubChem formula (scripts/mass.js); formula checked by fragment sum" }, "pubchem_match": true, "related_pubchem_records": [], "variants": [], "vortex_links": [ "https://vortexresearch.net/coa/" ], "notes": [ "Not a peptide: no sequence or residue count. mass.js computes masses from the formula; the formula itself is checked by an independent fragment sum (ADP-ribose, CID 33576, plus nicotinamide, CID 936, minus water).", "PubChem name lookup \"NAD+\" returns four CIDs: 5892 (Nadide, C21H27N7O14P2, CAS 53-84-9), 5893 (protonated cation, C21H28N7O14P2+), 15938971 (anion, C21H26N7O14P2-) and 10897651 (a second record with the same formula as 5892). CID 5892 is used because CAS 53-84-9 resolves to it.", "PubChem's CAS section also lists 64417-72-7 for this record (1 source entry, against 12 for 53-84-9); 53-84-9 is used." ], "sources": { "pubchem_name_lookups": [ { "name": "NAD+", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/NAD%2B/cids/JSON", "cids": [ 5892, 5893, 15938971, 10897651 ] }, { "name": "Nicotinamide adenine dinucleotide", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/Nicotinamide%20adenine%20dinucleotide/cids/JSON", "cids": [ 5892 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/5892/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/5892/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/5892/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "53-84-9", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/53-84-9/cids/JSON", "cids": [ 5892 ] }, "formula_derivation": { "method": "ADP-ribose + nicotinamide - H2O", "parts": [ { "cid": 33576, "title": "ADP-D-ribose", "formula": "C15H23N5O14P2", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/33576/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" }, { "cid": 936, "title": "Nicotinamide", "formula": "C6H6N2O", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/936/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" } ], "result": "C21H27N7O14P2" } } }, { "id": "5-amino-1mq", "name": "5-Amino-1MQ", "compound_type": "small molecule (non-peptide)", "is_peptide": false, "form": "quinolinium cation (charge +1), no counter-ion", "synonyms": [ "5-amino-1-methylquinolinium", "5-Amino-1-methylquinolin-1-ium" ], "sequence_one_letter": null, "sequence_three_letter": null, "residue_count": null, "modifications": null, "molecular_formula": "C10H11N2+", "average_mw": 159.21, "monoisotopic_mass": 159.092223359, "charge": 1, "pubchem_cid": 950107, "pubchem_title": "5-Amino-1-methylquinolinium", "cas": "685079-15-6", "computed": { "molecular_formula": "C10H11N2+", "average_mw": 159.21, "monoisotopic_mass": 159.0922, "delta_average_mw": -0.0023, "delta_monoisotopic_mass": 4.39e-9, "basis": "PubChem formula (scripts/mass.js); formula checked by fragment sum" }, "pubchem_match": true, "related_pubchem_records": [ { "cid": 66522933, "relation": "iodide salt (cation + I-), CAS 42464-96-0", "molecular_formula": "C10H11IN2", "average_mw": 286.11, "monoisotopic_mass": 285.9967, "charge": 0, "cas": [ "42464-96-0" ], "source": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/66522933/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "formula_check": "matches main record + I" } ], "variants": [], "vortex_links": [ "https://vortexresearch.net/coa/" ], "notes": [ "Not a peptide: no sequence or residue count. Formula checked by an independent fragment sum (5-aminoquinoline, CID 11911, plus a methyl group on the ring nitrogen).", "PubChem name lookup \"5-Amino-1MQ\" returns no record. The cation is CID 950107 (CAS 685079-15-6, C10H11N2+, 159.21). The iodide salt is CID 66522933 (CAS 42464-96-0, C10H11IN2, 286.11). Which CAS number and molecular weight apply to a material depends on its counter-ion.", "FLAG (PubChem data, not this row): the iodide record's synonym list also contains \"5-Amino-1-methylquinolinium chloride\", which does not match that record's formula (iodide). Not used." ], "sources": { "pubchem_name_lookups": [ { "name": "5-Amino-1MQ", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/5-Amino-1MQ/cids/JSON", "cids": [] }, { "name": "5-amino-1-methylquinolinium", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/5-amino-1-methylquinolinium/cids/JSON", "cids": [ 950107 ] } ], "pubchem_properties": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/950107/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON", "pubchem_synonyms": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/950107/synonyms/JSON", "pubchem_cas_section": "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/950107/JSON?heading=CAS", "pubchem_cas_lookup": { "name": "685079-15-6", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/685079-15-6/cids/JSON", "cids": [ 950107 ] }, "formula_derivation": { "method": "5-aminoquinoline + CH3 on the ring nitrogen (charge +1)", "parts": [ { "cid": 11911, "title": "5-Aminoquinoline", "formula": "C9H8N2", "url": "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/11911/property/MolecularFormula,MolecularWeight,MonoisotopicMass,Charge,Title,IUPACName/JSON" } ], "result": "C10H11N2+" } } } ] }