name: pipelines
channels:
  - r
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=4.5=1_gnu
  - _r-mutex=1.0.0=anacondar_1
  - _sysroot_linux-64_curr_repodata_hack=3=h5bd9786_12
  - alsa-lib=1.2.3=h516909a_0
  - anyio=3.3.0=py36h5fab9bb_0
  - argon2-cffi=20.1.0=py36h8f6f2f9_2
  - async_generator=1.10=py_0
  - attrs=21.2.0=pyhd8ed1ab_0
  - babel=2.9.1=pyh44b312d_0
  - backports=1.0=py_2
  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
  - bamtools=2.5.1=h9a82719_9
  - bcftools=1.9=ha228f0b_4
  - bedtools=2.30.0=h7d7f7ad_1
  - binutils_impl_linux-64=2.33.1=he6710b0_7
  - binutils_linux-64=2.33.1=h9595d00_15
  - biopython=1.79=py36h8f6f2f9_0
  - blast=2.9.0=pl526he19e7b1_5
  - bleach=4.1.0=pyhd8ed1ab_0
  - boost=1.66.0=py36_1
  - boost-cpp=1.66.0=1
  - brotlipy=0.7.0=py36h8f6f2f9_1001
  - bwidget=1.9.11=1
  - bzip2=1.0.8=h7b6447c_0
  - ca-certificates=2021.10.8=ha878542_0
  - cairo=1.16.0=hf32fb01_1
  - certifi=2021.5.30=py36h06a4308_0
  - cffi=1.14.6=py36hc120d54_0
  - chardet=4.0.0=py36h5fab9bb_1
  - charset-normalizer=2.0.0=pyhd8ed1ab_0
  - contextvars=2.4=py_0
  - cryptography=3.4.7=py36hb60f036_0
  - curl=7.69.1=hbc83047_0
  - cycler=0.10.0=py_2
  - dataclasses=0.8=pyh787bdff_2
  - dbus=1.13.6=he372182_0
  - decorator=5.1.0=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - emboss=6.6.0=h9a5bcf4_4
  - entrez-direct=16.2=he881be0_0
  - entrypoints=0.3=pyhd8ed1ab_1003
  - expat=2.4.1=h9c3ff4c_0
  - fastp=0.12.4=0
  - fastqc=0.11.9=hdfd78af_1
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - fontconfig=2.13.1=h6c09931_0
  - freebayes=1.3.2=py36ha64edc8_2
  - freetype=2.10.4=h5ab3b9f_0
  - fribidi=1.0.10=h7b6447c_0
  - gcc_impl_linux-64=7.3.0=habb00fd_1
  - gcc_linux-64=7.3.0=h553295d_15
  - gfortran_impl_linux-64=7.3.0=hdf63c60_1
  - gfortran_linux-64=7.3.0=h553295d_15
  - giflib=5.2.1=h36c2ea0_2
  - glib=2.69.1=h5202010_0
  - graphite2=1.3.14=h23475e2_0
  - gsl=2.4=h14c3975_4
  - gst-plugins-base=1.14.0=h8213a91_2
  - gstreamer=1.14.0=h28cd5cc_2
  - gxx_impl_linux-64=7.3.0=hdf63c60_1
  - gxx_linux-64=7.3.0=h553295d_15
  - harfbuzz=2.8.1=h6f93f22_0
  - htseq=0.13.5=py36h7d1f7ee_1
  - htslib=1.9=ha228f0b_7
  - icu=58.2=he6710b0_3
  - idna=3.1=pyhd3deb0d_0
  - immutables=0.16=py36h7f8727e_0
  - importlib-metadata=4.8.1=py36h5fab9bb_0
  - ipykernel=5.5.5=py36hcb3619a_0
  - ipython=5.8.0=py36_1
  - ipython_genutils=0.2.0=py_1
  - ipywidgets=7.6.5=pyhd8ed1ab_0
  - jinja2=3.0.1=pyhd8ed1ab_0
  - joblib=1.0.1=pyhd8ed1ab_0
  - jpeg=9d=h7f8727e_0
  - json5=0.9.5=pyh9f0ad1d_0
  - jsonschema=3.2.0=pyhd8ed1ab_3
  - jupyter=1.0.0=py36h5fab9bb_6
  - jupyter_client=7.0.3=pyhd8ed1ab_0
  - jupyter_console=5.2.0=py36_1
  - jupyter_core=4.8.1=py36h5fab9bb_0
  - jupyter_server=1.11.0=pyhd8ed1ab_0
  - jupyterlab=3.1.13=pyhd8ed1ab_0
  - jupyterlab_server=2.8.1=pyhd8ed1ab_0
  - jupyterlab_widgets=1.0.2=pyhd8ed1ab_0
  - kernel-headers_linux-64=3.10.0=h4a8ded7_12
  - kiwisolver=1.3.1=py36h2531618_0
  - krb5=1.17.1=h173b8e3_0
  - lcms2=2.12=hddcbb42_0
  - ld_impl_linux-64=2.33.1=h53a641e_7
  - libblas=3.9.0=8_openblas
  - libcblas=3.9.0=8_openblas
  - libcurl=7.69.1=h20c2e04_0
  - libdeflate=1.0=h14c3975_1
  - libedit=3.1.20210714=h7f8727e_0
  - libffi=3.3=he6710b0_2
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=9.3.0=h5101ec6_17
  - libgd=2.3.3=h695aa2c_0
  - libgfortran-ng=7.5.0=ha8ba4b0_17
  - libgfortran4=7.5.0=ha8ba4b0_17
  - libgomp=9.3.0=h5101ec6_17
  - libiconv=1.16=h516909a_0
  - liblapack=3.9.0=8_openblas
  - libopenblas=0.3.12=pthreads_hb3c22a3_1
  - libpng=1.6.37=hbc83047_0
  - libsodium=1.0.18=h36c2ea0_1
  - libssh2=1.9.0=h1ba5d50_1
  - libstdcxx-ng=9.3.0=hd4cf53a_17
  - libtiff=4.2.0=h85742a9_0
  - libuuid=1.0.3=h1bed415_2
  - libwebp-base=1.2.0=h27cfd23_0
  - libxcb=1.14=h7b6447c_0
  - libxml2=2.9.12=h03d6c58_0
  - llvm-openmp=8.0.1=hc9558a2_0
  - lz4-c=1.9.3=h295c915_1
  - make=4.2.1=h1bed415_1
  - markupsafe=2.0.1=py36h8f6f2f9_0
  - matplotlib=3.3.4=py36h06a4308_0
  - matplotlib-base=3.3.4=py36hd391965_0
  - mistune=0.8.4=py36h8f6f2f9_1004
  - nano=2.9.8=hddfc1eb_1001
  - nbclassic=0.3.2=pyhd8ed1ab_0
  - nbconvert=5.6.1=pyhd8ed1ab_2
  - nbformat=5.1.3=pyhd8ed1ab_0
  - ncurses=6.2=he6710b0_1
  - nest-asyncio=1.5.1=pyhd8ed1ab_0
  - notebook=6.3.0=py36h5fab9bb_0
  - numpy=1.19.5=py36hfc0c790_2
  - olefile=0.46=pyh9f0ad1d_1
  - openjdk=11.0.9.1=h5cc2fde_1
  - openmp=8.0.1=0
  - openssl=1.1.1n=h7f8727e_0
  - packaging=21.0=pyhd8ed1ab_0
  - pandas=1.1.5=py36h284efc9_0
  - pandaseq=2.11=h36cd882_5
  - pandocfilters=1.5.0=pyhd8ed1ab_0
  - pango=1.45.3=hd140c19_0
  - parallel=20160622=1
  - pcre=8.45=h295c915_0
  - pear=0.9.6=h36cd882_7
  - perl=5.26.2=h36c2ea0_1008
  - perl-archive-tar=2.32=pl526_0
  - perl-carp=1.38=pl526_3
  - perl-common-sense=3.74=pl526_2
  - perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
  - perl-compress-raw-zlib=2.087=pl526hc9558a2_0
  - perl-exporter=5.72=pl526_1
  - perl-exporter-tiny=1.002001=pl526_0
  - perl-extutils-makemaker=7.36=pl526_1
  - perl-io-compress=2.087=pl526he1b5a44_0
  - perl-io-zlib=1.10=pl526_2
  - perl-json=4.02=pl526_0
  - perl-json-xs=2.34=pl526h6bb024c_3
  - perl-list-moreutils=0.428=pl526_1
  - perl-list-moreutils-xs=0.428=pl526_0
  - perl-pathtools=3.75=pl526h14c3975_1
  - perl-scalar-list-utils=1.52=pl526h516909a_0
  - perl-threaded=5.26.0=0
  - perl-types-serialiser=1.0=pl526_2
  - perl-xsloader=0.24=pl526_0
  - pexpect=4.8.0=pyh9f0ad1d_2
  - picard=2.26.4=hdfd78af_0
  - pickleshare=0.7.5=py_1003
  - pillow=7.2.0=py36h8328e55_2
  - pip=21.2.2=py36h06a4308_0
  - pixman=0.40.0=h7b6447c_0
  - prometheus_client=0.11.0=pyhd8ed1ab_0
  - prompt_toolkit=1.0.15=py_1
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pycparser=2.20=pyh9f0ad1d_2
  - pygments=2.10.0=pyhd8ed1ab_0
  - pyopenssl=20.0.1=pyhd8ed1ab_0
  - pyparsing=2.4.7=pyh9f0ad1d_0
  - pyqt=5.9.2=py36hcca6a23_4
  - pyrsistent=0.17.3=py36h8f6f2f9_2
  - pysam=0.15.3=py36hda2845c_1
  - pysocks=1.7.1=py36h5fab9bb_3
  - python=3.6.13=h12debd9_1
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python_abi=3.6=2_cp36m
  - pytz=2021.1=pyhd8ed1ab_0
  - pyzmq=19.0.2=py36h9947dbf_2
  - qt=5.9.7=h5867ecd_1
  - qtconsole=5.1.1=pyhd8ed1ab_0
  - qtpy=1.11.1=pyhd8ed1ab_0
  - quast=4.6.3=py27pl526h3727419_2
  - r=3.6.0=r36_0
  - r-askpass=1.0=r36h14c3975_0
  - r-assertthat=0.2.1=r36h6115d3f_0
  - r-backports=1.1.4=r36h96ca727_0
  - r-base=3.6.1=haffb61f_2
  - r-base64enc=0.1_3=r36h96ca727_4
  - r-bh=1.69.0_1=r36h6115d3f_0
  - r-boot=1.3_20=r36h6115d3f_0
  - r-broom=0.5.2=r36h6115d3f_0
  - r-callr=3.2.0=r36h6115d3f_0
  - r-caret=6.0_83=r36h96ca727_0
  - r-cellranger=1.1.0=r36h6115d3f_0
  - r-class=7.3_15=r36h96ca727_0
  - r-cli=1.1.0=r36h6115d3f_0
  - r-clipr=0.6.0=r36h6115d3f_0
  - r-cluster=2.0.8=r36ha65eedd_0
  - r-codetools=0.2_16=r36h6115d3f_0
  - r-colorspace=1.4_1=r36h96ca727_0
  - r-crayon=1.3.4=r36h6115d3f_0
  - r-curl=3.3=r36h96ca727_0
  - r-data.table=1.12.2=r36h96ca727_0
  - r-dbi=1.0.0=r36h6115d3f_0
  - r-dbplyr=1.4.0=r36h6115d3f_0
  - r-dichromat=2.0_0=r36h6115d3f_4
  - r-digest=0.6.18=r36h96ca727_0
  - r-dplyr=0.8.0.1=r36h29659fb_0
  - r-ellipsis=0.1.0=r36h96ca727_0
  - r-essentials=3.6.0=r36_0
  - r-evaluate=0.13=r36h6115d3f_0
  - r-fansi=0.4.0=r36h96ca727_0
  - r-forcats=0.4.0=r36h6115d3f_0
  - r-foreach=1.4.4=r36h6115d3f_0
  - r-foreign=0.8_71=r36h96ca727_0
  - r-formatr=1.6=r36h6115d3f_0
  - r-fs=1.2.7=r36h29659fb_0
  - r-generics=0.0.2=r36h6115d3f_0
  - r-ggplot2=3.1.1=r36h6115d3f_0
  - r-glmnet=2.0_16=r36ha65eedd_0
  - r-glue=1.3.1=r36h96ca727_0
  - r-gower=0.2.0=r36h96ca727_0
  - r-gtable=0.3.0=r36h6115d3f_0
  - r-haven=2.1.0=r36h29659fb_0
  - r-hexbin=1.27.2=r36ha65eedd_0
  - r-highr=0.8=r36h6115d3f_0
  - r-hms=0.4.2=r36h6115d3f_0
  - r-htmltools=0.3.6=r36h29659fb_0
  - r-htmlwidgets=1.3=r36h6115d3f_0
  - r-httpuv=1.5.1=r36h29659fb_0
  - r-httr=1.4.0=r36h6115d3f_0
  - r-ipred=0.9_8=r36h96ca727_0
  - r-irdisplay=0.7.0=r36h6115d3f_0
  - r-irkernel=0.8.15=r36_0
  - r-iterators=1.0.10=r36h6115d3f_0
  - r-jsonlite=1.6=r36h96ca727_0
  - r-kernsmooth=2.23_15=r36ha65eedd_4
  - r-knitr=1.22=r36h6115d3f_0
  - r-labeling=0.3=r36h6115d3f_4
  - r-later=0.8.0=r36h29659fb_0
  - r-lattice=0.20_38=r36h96ca727_0
  - r-lava=1.6.5=r36h6115d3f_0
  - r-lazyeval=0.2.2=r36h96ca727_0
  - r-lubridate=1.7.4=r36h29659fb_0
  - r-magrittr=1.5=r36h6115d3f_4
  - r-maps=3.3.0=r36h96ca727_0
  - r-markdown=0.9=r36h96ca727_0
  - r-mass=7.3_51.3=r36h96ca727_0
  - r-matrix=1.2_17=r36h96ca727_0
  - r-mgcv=1.8_28=r36h96ca727_0
  - r-mime=0.6=r36h96ca727_0
  - r-modelmetrics=1.2.2=r36h29659fb_0
  - r-modelr=0.1.4=r36h6115d3f_0
  - r-munsell=0.5.0=r36h6115d3f_0
  - r-nlme=3.1_139=r36ha65eedd_0
  - r-nnet=7.3_12=r36h96ca727_0
  - r-numderiv=2016.8_1=r36h6115d3f_0
  - r-openssl=1.3=r36h96ca727_0
  - r-pbdzmq=0.3_3=r36h5455479_1
  - r-pillar=1.3.1=r36h6115d3f_0
  - r-pkgconfig=2.0.2=r36h6115d3f_0
  - r-plogr=0.2.0=r36h6115d3f_0
  - r-plyr=1.8.4=r36h29659fb_0
  - r-prettyunits=1.0.2=r36h6115d3f_0
  - r-processx=3.3.0=r36h96ca727_0
  - r-prodlim=2018.04.18=r36h29659fb_0
  - r-progress=1.2.0=r36h6115d3f_0
  - r-promises=1.0.1=r36h29659fb_0
  - r-ps=1.3.0=r36h96ca727_0
  - r-purrr=0.3.2=r36h96ca727_0
  - r-quantmod=0.4_14=r36h6115d3f_0
  - r-r6=2.4.0=r36h6115d3f_0
  - r-randomforest=4.6_14=r36ha65eedd_0
  - r-rbokeh=0.6.3=r36_0
  - r-rcolorbrewer=1.1_2=r36h6115d3f_0
  - r-rcpp=1.0.1=r36h29659fb_0
  - r-rcpproll=0.3.0=r36h29659fb_0
  - r-readr=1.3.1=r36h29659fb_0
  - r-readxl=1.3.1=r36h29659fb_0
  - r-recipes=0.1.5=r36h6115d3f_0
  - r-recommended=3.6.0=r36_0
  - r-rematch=1.0.1=r36h6115d3f_0
  - r-repr=0.19.2=r36h6115d3f_0
  - r-reprex=0.2.1=r36h6115d3f_0
  - r-reshape2=1.4.3=r36h29659fb_0
  - r-rlang=0.3.4=r36h96ca727_0
  - r-rmarkdown=1.12=r36h6115d3f_0
  - r-rpart=4.1_15=r36h96ca727_0
  - r-rstudioapi=0.10=r36h6115d3f_0
  - r-rvest=0.3.3=r36h6115d3f_0
  - r-scales=1.0.0=r36h29659fb_0
  - r-selectr=0.4_1=r36h6115d3f_0
  - r-shiny=1.3.2=r36h6115d3f_0
  - r-sourcetools=0.1.7=r36h29659fb_0
  - r-spatial=7.3_11=r36h96ca727_4
  - r-squarem=2017.10_1=r36h6115d3f_0
  - r-stringi=1.4.3=r36h29659fb_0
  - r-stringr=1.4.0=r36h6115d3f_0
  - r-survival=2.44_1.1=r36h96ca727_0
  - r-sys=3.2=r36h96ca727_0
  - r-tibble=2.1.1=r36h96ca727_0
  - r-tidyr=0.8.3=r36h29659fb_0
  - r-tidyselect=0.2.5=r36h29659fb_0
  - r-tidyverse=1.2.1=r36h6115d3f_0
  - r-timedate=3043.102=r36h6115d3f_0
  - r-tinytex=0.12=r36h6115d3f_0
  - r-ttr=0.23_4=r36ha65eedd_0
  - r-utf8=1.1.4=r36h96ca727_0
  - r-uuid=0.1_2=r36h96ca727_4
  - r-viridislite=0.3.0=r36h6115d3f_0
  - r-whisker=0.3_2=r36h6115d3f_4
  - r-withr=2.1.2=r36h6115d3f_0
  - r-xfun=0.6=r36h6115d3f_0
  - r-xml=3.98_1.19=r36h96ca727_0
  - r-xml2=1.2.0=r36h29659fb_0
  - r-xtable=1.8_4=r36h6115d3f_0
  - r-xts=0.11_2=r36h96ca727_0
  - r-yaml=2.2.0=r36h96ca727_0
  - r-zoo=1.8_6=r36h96ca727_0
  - readline=8.1=h27cfd23_0
  - requests=2.26.0=pyhd8ed1ab_0
  - requests-unixsocket=0.2.0=py_0
  - rtg-tools=3.12.1=hdfd78af_0
  - samtools=1.1=h270b39a_6
  - send2trash=1.8.0=pyhd8ed1ab_0
  - seqtk=1.3=h5bf99c6_3
  - setuptools=58.0.4=py36h06a4308_0
  - simplegeneric=0.8.1=py_1
  - simplejson=3.8.1=py36_0
  - sip=4.19.8=py36hf484d3e_0
  - six=1.16.0=pyh6c4a22f_0
  - sniffio=1.2.0=py36h5fab9bb_1
  - spades=3.15.3=h95f258a_0
  - sqlite=3.36.0=hc218d9a_0
  - sra-tools=2.8.0=0
  - star=2.7.9a=h9ee0642_0
  - sysroot_linux-64=2.17=h4a8ded7_12
  - terminado=0.12.1=py36h5fab9bb_0
  - testpath=0.5.0=pyhd8ed1ab_0
  - tk=8.6.10=hbc83047_0
  - tktable=2.10=h14c3975_0
  - tornado=6.1=py36h8f6f2f9_1
  - traitlets=4.3.3=pyhd8ed1ab_2
  - typing-extensions=3.10.0.2=hd8ed1ab_0
  - typing_extensions=3.10.0.2=pyha770c72_0
  - urllib3=1.26.7=pyhd8ed1ab_0
  - vcflib=1.0.0_rc2=h56106d0_2
  - wcwidth=0.2.5=pyh9f0ad1d_2
  - webencodings=0.5.1=py_1
  - websocket-client=0.57.0=py36h5fab9bb_4
  - wheel=0.37.0=pyhd3eb1b0_1
  - widgetsnbextension=3.5.1=py36h5fab9bb_4
  - xorg-fixesproto=5.0=h7f98852_1002
  - xorg-inputproto=2.3.2=h7f98852_1002
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libx11=1.7.2=h7f98852_0
  - xorg-libxext=1.3.4=h7f98852_1
  - xorg-libxfixes=5.0.3=h7f98852_1004
  - xorg-libxi=1.7.10=h7f98852_0
  - xorg-libxrender=0.9.10=h7f98852_1003
  - xorg-libxtst=1.2.3=h7f98852_1002
  - xorg-recordproto=1.14.2=h7f98852_1002
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xz=5.2.5=h7b6447c_0
  - zeromq=4.3.4=h9c3ff4c_0
  - zipp=3.5.0=pyhd8ed1ab_0
  - zlib=1.2.11=h7b6447c_3
  - zstd=1.4.9=haebb681_0
  - pip:
    - scipy==1.5.4
    - seaborn==0.11.2