{ "cells": [ { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "# Data Aggregation and Group Operations" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd\n", "PREVIOUS_MAX_ROWS = pd.options.display.max_rows\n", "pd.options.display.max_rows = 20\n", "np.random.seed(12345)\n", "import matplotlib.pyplot as plt\n", "plt.rc('figure', figsize=(10, 6))\n", "np.set_printoptions(precision=4, suppress=True)" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "## GroupBy Mechanics" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "df = pd.DataFrame({'key1' : ['a', 'a', 'b', 'b', 'a'],\n", " 'key2' : ['one', 'two', 'one', 'two', 'one'],\n", " 'data1' : np.random.randn(5),\n", " 'data2' : np.random.randn(5)})\n", "df" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped = df['data1'].groupby(df['key1'])\n", "grouped" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped.mean()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "means = df['data1'].groupby([df['key1'], df['key2']]).mean()\n", "means" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "means.unstack()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "states = np.array(['Ohio', 'California', 'California', 'Ohio', 'Ohio'])\n", "years = np.array([2005, 2005, 2006, 2005, 2006])\n", "df['data1'].groupby([states, years]).mean()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "df.groupby('key1').mean()\n", "df.groupby(['key1', 'key2']).mean()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "df.groupby(['key1', 'key2']).size()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Iterating Over Groups" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "for name, group in df.groupby('key1'):\n", " print(name)\n", " print(group)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "for (k1, k2), group in df.groupby(['key1', 'key2']):\n", " print((k1, k2))\n", " print(group)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "pieces = dict(list(df.groupby('key1')))\n", "pieces['b']" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "df.dtypes\n", "grouped = df.groupby(df.dtypes, axis=1)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "for dtype, group in grouped:\n", " print(dtype)\n", " print(group)" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Selecting a Column or Subset of Columns" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "df.groupby('key1')['data1']\n", "df.groupby('key1')[['data2']]" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "df['data1'].groupby(df['key1'])\n", "df[['data2']].groupby(df['key1'])" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "df.groupby(['key1', 'key2'])[['data2']].mean()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "s_grouped = df.groupby(['key1', 'key2'])['data2']\n", "s_grouped\n", "s_grouped.mean()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Grouping with Dicts and Series" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "people = pd.DataFrame(np.random.randn(5, 5),\n", " columns=['a', 'b', 'c', 'd', 'e'],\n", " index=['Joe', 'Steve', 'Wes', 'Jim', 'Travis'])\n", "people.iloc[2:3, [1, 2]] = np.nan # Add a few NA values\n", "people" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "mapping = {'a': 'red', 'b': 'red', 'c': 'blue',\n", " 'd': 'blue', 'e': 'red', 'f' : 'orange'}" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "by_column = people.groupby(mapping, axis=1)\n", "by_column.sum()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "map_series = pd.Series(mapping)\n", "map_series\n", "people.groupby(map_series, axis=1).count()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Grouping with Functions" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "people.groupby(len).sum()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "key_list = ['one', 'one', 'one', 'two', 'two']\n", "people.groupby([len, key_list]).min()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Grouping by Index Levels" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "columns = pd.MultiIndex.from_arrays([['US', 'US', 'US', 'JP', 'JP'],\n", " [1, 3, 5, 1, 3]],\n", " names=['cty', 'tenor'])\n", "hier_df = pd.DataFrame(np.random.randn(4, 5), columns=columns)\n", "hier_df" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "hier_df.groupby(level='cty', axis=1).count()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "## Data Aggregation" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "df\n", "grouped = df.groupby('key1')\n", "grouped['data1'].quantile(0.9)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "def peak_to_peak(arr):\n", " return arr.max() - arr.min()\n", "grouped.agg(peak_to_peak)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped.describe()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Column-Wise and Multiple Function Application" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips = pd.read_csv('examples/tips.csv')\n", "# Add tip percentage of total bill\n", "tips['tip_pct'] = tips['tip'] / tips['total_bill']\n", "tips[:6]" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped = tips.groupby(['day', 'smoker'])" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped_pct = grouped['tip_pct']\n", "grouped_pct.agg('mean')" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped_pct.agg(['mean', 'std', peak_to_peak])" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped_pct.agg([('foo', 'mean'), ('bar', np.std)])" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "functions = ['count', 'mean', 'max']\n", "result = grouped['tip_pct', 'total_bill'].agg(functions)\n", "result" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "result['tip_pct']" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "ftuples = [('Durchschnitt', 'mean'), ('Abweichung', np.var)]\n", "grouped['tip_pct', 'total_bill'].agg(ftuples)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped.agg({'tip' : np.max, 'size' : 'sum'})\n", "grouped.agg({'tip_pct' : ['min', 'max', 'mean', 'std'],\n", " 'size' : 'sum'})" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Returning Aggregated Data Without Row Indexes" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.groupby(['day', 'smoker'], as_index=False).mean()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "## Apply: General split-apply-combine" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "def top(df, n=5, column='tip_pct'):\n", " return df.sort_values(by=column)[-n:]\n", "top(tips, n=6)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.groupby('smoker').apply(top)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.groupby(['smoker', 'day']).apply(top, n=1, column='total_bill')" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "result = tips.groupby('smoker')['tip_pct'].describe()\n", "result\n", "result.unstack('smoker')" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "f = lambda x: x.describe()\n", "grouped.apply(f)" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Suppressing the Group Keys" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.groupby('smoker', group_keys=False).apply(top)" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Quantile and Bucket Analysis" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "frame = pd.DataFrame({'data1': np.random.randn(1000),\n", " 'data2': np.random.randn(1000)})\n", "quartiles = pd.cut(frame.data1, 4)\n", "quartiles[:10]" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "def get_stats(group):\n", " return {'min': group.min(), 'max': group.max(),\n", " 'count': group.count(), 'mean': group.mean()}\n", "grouped = frame.data2.groupby(quartiles)\n", "grouped.apply(get_stats).unstack()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "# Return quantile numbers\n", "grouping = pd.qcut(frame.data1, 10, labels=False)\n", "grouped = frame.data2.groupby(grouping)\n", "grouped.apply(get_stats).unstack()" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Example: Filling Missing Values with Group-Specific Values" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "s = pd.Series(np.random.randn(6))\n", "s[::2] = np.nan\n", "s\n", "s.fillna(s.mean())" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "states = ['Ohio', 'New York', 'Vermont', 'Florida',\n", " 'Oregon', 'Nevada', 'California', 'Idaho']\n", "group_key = ['East'] * 4 + ['West'] * 4\n", "data = pd.Series(np.random.randn(8), index=states)\n", "data" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "data[['Vermont', 'Nevada', 'Idaho']] = np.nan\n", "data\n", "data.groupby(group_key).mean()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "fill_mean = lambda g: g.fillna(g.mean())\n", "data.groupby(group_key).apply(fill_mean)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "fill_values = {'East': 0.5, 'West': -1}\n", "fill_func = lambda g: g.fillna(fill_values[g.name])\n", "data.groupby(group_key).apply(fill_func)" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Example: Random Sampling and Permutation" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "# Hearts, Spades, Clubs, Diamonds\n", "suits = ['H', 'S', 'C', 'D']\n", "card_val = (list(range(1, 11)) + [10] * 3) * 4\n", "base_names = ['A'] + list(range(2, 11)) + ['J', 'K', 'Q']\n", "cards = []\n", "for suit in ['H', 'S', 'C', 'D']:\n", " cards.extend(str(num) + suit for num in base_names)\n", "\n", "deck = pd.Series(card_val, index=cards)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "deck[:13]" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "def draw(deck, n=5):\n", " return deck.sample(n)\n", "draw(deck)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "get_suit = lambda card: card[-1] # last letter is suit\n", "deck.groupby(get_suit).apply(draw, n=2)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "deck.groupby(get_suit, group_keys=False).apply(draw, n=2)" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Example: Group Weighted Average and Correlation" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "df = pd.DataFrame({'category': ['a', 'a', 'a', 'a',\n", " 'b', 'b', 'b', 'b'],\n", " 'data': np.random.randn(8),\n", " 'weights': np.random.rand(8)})\n", "df" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "grouped = df.groupby('category')\n", "get_wavg = lambda g: np.average(g['data'], weights=g['weights'])\n", "grouped.apply(get_wavg)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "close_px = pd.read_csv('examples/stock_px_2.csv', parse_dates=True,\n", " index_col=0)\n", "close_px.info()\n", "close_px[-4:]" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "spx_corr = lambda x: x.corrwith(x['SPX'])" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "rets = close_px.pct_change().dropna()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "get_year = lambda x: x.year\n", "by_year = rets.groupby(get_year)\n", "by_year.apply(spx_corr)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "by_year.apply(lambda g: g['AAPL'].corr(g['MSFT']))" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Example: Group-Wise Linear Regression" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "import statsmodels.api as sm\n", "def regress(data, yvar, xvars):\n", " Y = data[yvar]\n", " X = data[xvars]\n", " X['intercept'] = 1.\n", " result = sm.OLS(Y, X).fit()\n", " return result.params" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "by_year.apply(regress, 'AAPL', ['SPX'])" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "## Pivot Tables and Cross-Tabulation" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.pivot_table(index=['day', 'smoker'])" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.pivot_table(['tip_pct', 'size'], index=['time', 'day'],\n", " columns='smoker')" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.pivot_table(['tip_pct', 'size'], index=['time', 'day'],\n", " columns='smoker', margins=True)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.pivot_table('tip_pct', index=['time', 'smoker'], columns='day',\n", " aggfunc=len, margins=True)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "tips.pivot_table('tip_pct', index=['time', 'size', 'smoker'],\n", " columns='day', aggfunc='mean', fill_value=0)" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "### Cross-Tabulations: Crosstab" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "from io import StringIO\n", "data = \"\"\"\\\n", "Sample Nationality Handedness\n", "1 USA Right-handed\n", "2 Japan Left-handed\n", "3 USA Right-handed\n", "4 Japan Right-handed\n", "5 Japan Left-handed\n", "6 Japan Right-handed\n", "7 USA Right-handed\n", "8 USA Left-handed\n", "9 Japan Right-handed\n", "10 USA Right-handed\"\"\"\n", "data = pd.read_table(StringIO(data), sep='\\s+')" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "data" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "pd.crosstab(data.Nationality, data.Handedness, margins=True)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "pd.crosstab([tips.time, tips.day], tips.smoker, margins=True)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [], "source": [ "pd.options.display.max_rows = PREVIOUS_MAX_ROWS" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "## Conclusion" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.0" } }, "nbformat": 4, "nbformat_minor": 0 }