Pleural Mesothelioma (PM) is a rare type of cancer affecting the mesothelial cells of the lungs. 80% of the patients have been exposed to asbestos before being diagnosed, but only 5% of the people exposed to asbestos develop mesothelioma.
Through a literature study and community workshop, several pathways have been identified to contribute to the development of the disease, which are captured in this PM pathway. Frequently mutated genes are highlighted in bold, where red nodes indicate tumor suppressor genes, and yellow indicates oncogenes.
This pathway has been published in Frontiers in Oncology: https://doi.org/10.3389/fonc.2022.849640 Mesotheliomad4ea11Cytochrome Cf72fa1aa0ac8fa1Also known as Krebs or citric acid cycledcfP21f4af4ab0dThe Cancer Genome Atlas Data Portal entry for BAP1: https://portal.gdc.cancer.gov/genes/ENSG00000163930Onco KnowledgeBase entry for BAP1: https://www.oncokb.org/gene/BAP1neXtProt entry for BAP1: https://www.nextprot.org/entry/NX_Q92560/f4adf0acbfe3b0dbfebfeec6fa1aa0fa1fa1Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:21687NDR1/2NDR1/2f72f72f72Cytochrome Cparentid=P35222; parentsymbol=CTNNB1; site=yLDsGIHsGATtTAP; position=ser37; sitegrpid=447582; ptm=p; direction=dparentid=P35222; parentsymbol=CTNNB1; site=QQQsyLDsGIHsGAT; position=ser33; sitegrpid=447487; ptm=p; direction=dparentid=P35222; parentsymbol=CTNNB1; site=GIHsGATtTAPsLsG; position=thr41; sitegrpid=447583; ptm=p; direction=dparentid=P35222; parentsymbol=CTNNB1; site=yLDsGIHsGATtTAP; position=ser37; sitegrpid=447582; ptm=p; direction=dparentid=P35222; parentsymbol=CTNNB1; site=GIHsGATtTAPsLsG; position=thr41; sitegrpid=447583; ptm=p; direction=dparentid=P35222; parentsymbol=CTNNB1; site=QQQsyLDsGIHsGAT; position=ser33; sitegrpid=447487; ptm=p; direction=db7ff3bbc2bf7fa1b7febbb52Stabilisation of ITPR3 through deubiquitinationf4addaa11bc2b7ff3bba4ba4bc2df0a11ba4bbeb7febbbc2ebbbf7b7febbbf7b7fbc2f77a9cbf7bf7b7ffa1fa1fa1a2fddaba4b52ebbbf7bf7f3fbf7bf7bbefa1b7fb7fba4fa1e58bf7b7fb7fb7febbba4a0ab7febbb7fbf7b7fa11e9ef52f5df05f05f5df5db52df0f5df90ad4f90df0f05f90f05df0f05f05df0f52f05df0b52f90df0f52df0f52df0df0f4af05f5df90f52df0d1ef52df0f05df0f52f90f52df0df0fd1f5ddf0ca4bf7f05df0bc2f52b52f52f90f52f52fd1df0f5ddf0b52f90df0b52fa1b7fb7fb7ffa1e58b52b52bf7bf7bf7bf7bf7bf7bf7bf7ca4ca4ca4ca4ba4bc2bc2bc2bc2bc2b52b83b0daa0fa1fa1aa0e58a2fb52fa1fa1fa1fa127300434PubMedYAP/TAZ at the Roots of Cancer.Cancer Cell2016Zanconato FCordenonsi MPiccolo S21484256PubMedAn emerging model for BAP1's role in regulating cell cycle progression.Cell Biochem Biophys2011Eletr ZMWilkinson KD34073720PubMedPathological Characterization of Tumor Immune Microenvironment (TIME) in Malignant Pleural Mesothelioma.Cancers (Basel)2021Napoli FListì AZambelli VWitel GBironzo PPapotti MVolante MScagliotti GRighi L10.2174/9781681081946116010017DOIBiomolecular Pathways and Malignant Pleural MesotheliomaMalignant Pleural Mesothelioma: Present Status and Future Directions2015Marie-Claude JaurandDidier Jean31283845PubMedMesothelioma: Scientific clues for prevention, diagnosis, and therapy.CA Cancer J Clin2019Carbone MAdusumilli PSAlexander HR JrBaas PBardelli FBononi ABueno RFelley-Bosco EGalateau-Salle FJablons DMansfield ASMinaai Mde Perrot MPesavento PRusch VSeverson DTTaioli ETsao AWoodard GYang HZauderer MGPass HI33329574PubMedTERT-Regulation and Roles in Cancer Formation.Front Immunol2020Dratwa MWysoczańska BŁacina PKubik TBogunia-Kubik Kmalignant pleural mesotheliomaDOID:7474Human Disease Ontologydisease pathwayPW:0000013Pathway Ontology28740119PubMedNovel insights into mesothelioma biology and implications for therapy.Nat Rev Cancer2017Yap TAAerts JGPopat SFennell DA16216411PubMedMolecular pathways in malignant pleural mesothelioma.Cancer Lett2006Whitson BAKratzke RA33800494PubMedIdentification of Overexpressed Genes in Malignant Pleural Mesothelioma.Int J Mol Sci2021Morani FBisceglia LRosini GMutti LMelaiu OLandi SGemignani F31867277PubMedThe Immune Microenvironment in Mesothelioma: Mechanisms of Resistance to Immunotherapy.Front Oncol2019Chu GJvan Zandwijk NRasko JEJ23975423PubMedOverexpression and promoter mutation of the TERT gene in malignant pleural mesothelioma.Oncogene2014Tallet ANault JCRenier AHysi IGalateau-Sallé FCazes ACopin MCHofman PAndujar PLe Pimpec-Barthes FZucman-Rossi JJaurand MCJean D28614305PubMedBAP1 regulates IP3R3-mediated Ca2+ flux to mitochondria suppressing cell transformation.Nature2017Bononi AGiorgi CPatergnani SLarson DVerbruggen KTanji MPellegrini LSignorato VOlivetto FPastorino SNasu MNapolitano AGaudino GMorris PSakamoto GFerris LKDanese ARaimondi ATacchetti CKuchay SPass HIAffar EBYang HPinton PCarbone M24607545PubMedRASSF tumor suppressor gene family: biological functions and regulation.FEBS Lett2014Volodko NGordon MSalla MGhazaleh HABaksh S12771921PubMedMatrix metalloproteinases 2 and 9 (gelatinases A and B) expression in malignant mesothelioma and benign pleura.Br J Cancer2003Edwards JGMcLaren JJones JLWaller DAO'Byrne KJ24780002PubMedThe ins and outs of fibroblast growth factor receptor signalling.Clin Sci (Lond)2014Coleman SJBruce CChioni AMKocher HMGrose RP29565815PubMedTargeting the Hippo Pathway Is a New Potential Therapeutic Modality for Malignant Mesothelioma.Cancers (Basel)2018Sekido Ymesothelial cell of pleuraCL:1000491Cell Ontology15686623PubMedWnt signaling in disease and in development.Cell Res2005Nusse R30073421PubMedThe hippo pathway provides novel insights into lung cancer and mesothelioma treatment.J Cancer Res Clin Oncol2018Liu XLZuo ROu WB33462414PubMedRoles and mechanisms of BAP1 deubiquitinase in tumor suppression.Cell Death Differ2021Masclef LAhmed OEstavoyer BLarrivée BLabrecque NNijnik AAffar EB12589646PubMedThe use of CDKN2A deletion as a diagnostic marker for malignant mesothelioma in body cavity effusions.Cancer2003Illei PBLadanyi MRusch VWZakowski MF12612292PubMedRegulation of matrix metalloprotease activity in malignant mesothelioma cell lines by growth factors.Thorax2003Liu ZKlominek J23550303PubMedBAP1 and cancer.Nat Rev Cancer2013Carbone MYang HPass HIKrausz TTesta JRGaudino G32317288PubMedTelomerase Reverse Transcriptase Promoter Mutations Identify a Genomically Defined and Highly Aggressive Human Pleural Mesothelioma Subgroup.Clin Cancer Res2020Pirker CBilecz AGrusch MMohr THeidenreich BLaszlo VStockhammer PLötsch-Gojo DGojo JGabler LSpiegl-Kreinecker SDome BSteindl AKlikovits THoda MAJakopovic MSamarzija MMohorcic KKern IKiesel BBrcic LOberndorfer FMüllauer LKlepetko WSchmidt WMKumar RHegedus BBerger W32882916PubMedGenomics and Functional Genomics of Malignant Pleural Mesothelioma.Int J Mol Sci2020Cakiroglu ESenturk S27507853PubMedGenomic Landscape of Malignant Mesotheliomas.Mol Cancer Ther2016Kato STomson BNBuys TPElkin SKCarter JLKurzrock R30101371PubMedMechanoregulation and pathology of YAP/TAZ via Hippo and non-Hippo mechanisms.Clin Transl Med2018Dobrokhotov OSamsonov MSokabe MHirata H19753302PubMedGlobal gene expression profiling of human pleural mesotheliomas: identification of matrix metalloproteinase 14 (MMP-14) as potential tumour target.PLoS One2009Crispi SCalogero RASantini MMellone PVincenzi BCitro GVicidomini GFasano SMeccariello RCobellis GMenegozzo SPierantoni RFacciolo FBaldi AMenegozzo M26078352PubMedReactive oxygen species a double-edged sword for mesothelioma.Oncotarget2015Benedetti SNuvoli BCatalani SGalati Raltered autophagy pathwayPW:0001562Pathway Ontology29371938PubMedLarge-scale copy number analysis reveals variations in genes not previously associated with malignant pleural mesothelioma.Oncotarget2017Hylebos MVan Camp GVandeweyer GFransen EBeyens MCornelissen RSuls APauwels Pvan Meerbeeck JPOp de Beeck K32768523PubMedTERT promoter mutations and GABP transcription factors in carcinogenesis: More foes than friends.Cancer Lett2020Yuan XDai MXu D30642555PubMedMolecular pathways and diagnosis in malignant mesothelioma: A review of the 14th International Conference of the International Mesothelioma Interest Group.Lung Cancer2019Chapel DBChurg ASantoni-Rugiu ETsujimura THiroshima KHusain AN31285550PubMedMechanisms underlying the activation of TERT transcription and telomerase activity in human cancer: old actors and new players.Oncogene2019Yuan XLarsson CXu D28327630PubMedRassf Proteins as Modulators of Mst1 Kinase Activity.Sci Rep2017Bitra ASistla SMariam JMalvi HAnand R33232793PubMedFundamental insights into the interaction between telomerase/TERT and intracellular signaling pathways.Biochimie2021Ghareghomi SAhmadian SZarghami NKahroba H27282309PubMedThe Genetic Landscape of Malignant Pleural Mesothelioma: Results from Massively Parallel Sequencing.J Thorac Oncol2016Hylebos MVan Camp Gvan Meerbeeck JPOp de Beeck K26358421PubMedCritical review about MDM2 in cancer: Possible role in malignant mesothelioma and implications for treatment.Crit Rev Oncol Hematol2016Urso LCalabrese FFavaretto AConte PPasello Gmesothelial cellCL:0000077Cell Ontology23395095PubMedNew insights into understanding the mechanisms, pathogenesis, and management of malignant mesotheliomas.Am J Pathol2013Mossman BTShukla AHeintz NHVerschraegen CFThomas AHassan R9378538PubMedDifferential motile response of human malignant mesothelioma cells to fibronectin, laminin and collagen type IV: the role of beta1 integrins.Int J Cancer1997Klominek JSumitran Karuppan SHauzenberger D34226685PubMedBiological basis for novel mesothelioma therapies.Br J Cancer2021Obacz JYung HShamseddin MLinnane ELiu XAzad AARassl DMFairen-Jimenez DRintoul RCNikolić MZMarciniak SJ