{ "graphs" : [ { "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/ZECO_0000246", "meta" : { "definition" : { "val" : "Housing condition in which the enclosure of the fish is undercrowded,containing a low amount of fish that increases the available space of the enclosure.", "xrefs" : [ ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low density", "xrefs" : [ ] } ] }, "type" : "CLASS", "lbl" : "undercrowding" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000125", "meta" : { "definition" : { "val" : "Fat content condition in which the amount of fat in the diet is reduced.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "low fat" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000126", "meta" : { "definition" : { "val" : "Low fat condition in which the amount of trans fat in the diet is reduced.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "low trans fat" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000247", "meta" : { "definition" : { "val" : "Food availability condition in which food is provided in increased supply.", "xrefs" : [ ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "overfeeding", "xrefs" : [ ] } ] }, "type" : "CLASS", "lbl" : "increased food availability" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000248", "meta" : { "definition" : { "val" : "Physical alteration which uses cold to damage an anatomical structure, cell, or organ", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "cold damage" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000127", "meta" : { "definition" : { "val" : "Low fat condition in which the amount of polyunsaturated fat in the diet is reduced.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "low polyunsaturated fat" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000128", "meta" : { "definition" : { "val" : "Food content condition in which the amount of protein in the diet is manipulated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "protein content" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000249", "meta" : { "definition" : { "val" : "Experimental condition which uses a cold instrument to ablate an anatomical structure or cell.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "cryoablation" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000121", "meta" : { "definition" : { "val" : "Food content condition in which the amount of fat in the diet is manipulated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "fat content" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000242", "meta" : { "definition" : { "val" : "Food content condtion in which the amount of carbohydrate in the diet is reduced.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "low carbohydrate" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000243", "type" : "CLASS", "lbl" : "stress by handling" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000122", "meta" : { "definition" : { "val" : "Fat content condition in which the amount of fat in the diet is elevated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "high fat" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000244", "meta" : { "definition" : { "val" : "Mechanical stress condition where the organism is subjected to vibrations having an ultrasonic frequency.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "ultrasound" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000123", "meta" : { "definition" : { "val" : "High fat condition in which the amount of saturated fat in the diet is elevated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "high saturated fat" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000245", "meta" : { "definition" : { "val" : "Physical alteration which uses light to damage the anatomical structure, cell, or organ.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "light damage" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000124", "meta" : { "definition" : { "val" : "High fat condition in which the amount of monounsaturated fat in the diet is elevated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "high monounsaturated fat" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000240", "meta" : { "definition" : { "val" : "Food content condition in which the amount of carbohydrate in the diet is manipulated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "carbohydrate content" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002211", "meta" : { "definition" : { "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Hill" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Tanya Berardini" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "false" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "GO" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "regulates (processual)" } ] }, "type" : "PROPERTY", "lbl" : "regulates" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000241", "meta" : { "definition" : { "val" : "Food content condtion in which the amount of carbohydrate in the diet is elevated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "high carbohydrate" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000120", "meta" : { "definition" : { "val" : "Cholesterol content condition in which the amount of cholesterol in the diet is reduced.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "low cholesterol" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { "definition" : { "val" : "a core relation that holds between a part and its whole", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my brain is part of my body (continuant parthood, two material entities)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "part_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "is part of" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." } ] }, "type" : "PROPERTY", "lbl" : "part of" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000115", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, "type" : "PROPERTY", "lbl" : "definition" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000118", "meta" : { "definition" : { "val" : "Food content condition in which the amount of cholesterol in the diet is manipulated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "cholesterol content" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000051", "meta" : { "definition" : { "val" : "a core relation that holds between a whole and its part", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "has part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my body has part my brain (continuant parthood, two material entities)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this year has part this day (occurrent parthood)" } ] }, "type" : "PROPERTY", "lbl" : "has part" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000239", "meta" : { "definition" : { "val" : "Chemical treatment condition in which the chemical is introduced through the diet.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "chemical treatment by diet" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000119", "meta" : { "definition" : { "val" : "Cholesterol content condition in which the amount of cholesterol in the diet is elevated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "high cholesterol" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000114", "meta" : { "definition" : { "val" : "Limited food availability condition in which there is no food provided.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "fasting" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000235", "meta" : { "definition" : { "val" : "Viral treatment where the virus is injected into the fish.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "viral treatment by injection" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000115", "meta" : { "definition" : { "val" : "Food availability condition in which food is provided in limited supply.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "limited food availability" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000236", "meta" : { "definition" : { "val" : "Xenotransplantation condition in which cancer cells are injected or grafted into the zebrafish.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "cancer xenotransplantation" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000237", "meta" : { "definition" : { "val" : "Chemical treatment in which the chemical is injected into the zebrafish.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "chemical treatment by injection" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000116", "meta" : { "definition" : { "val" : "Food availability condition in which food is available in unlimited supply.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "unlimited food availability" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000117", "meta" : { "definition" : { "val" : "Diet condition in which the contents of the food is manipulated.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "food content" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000238", "meta" : { "definition" : { "val" : "Chemical treatment condition in which the chemical is introduced through the environment. For zebrafish this is the tank water.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "chemical treatment by environment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000110", "meta" : { "definition" : { "val" : "Biological treatment in which fish have been infected with a virus.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "viral treatment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000198", "type" : "CLASS", "lbl" : "high sodium" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000231", "meta" : { "definition" : { "val" : "Bacterial treatment where the bacteria are introduced via the environment. For zebrafish this is the tank water.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "bacterial treatment by exposure to environment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000111", "meta" : { "definition" : { "val" : "Experimental condition in which the fish is treated with a chemical substance. This treatment could be administered by adding the chemical substance to the tank water, injections, or by consumption.", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/ZECO_0000267" ] }, "type" : "CLASS", "lbl" : "chemical treatment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000232", "meta" : { "definition" : { "val" : "Fungal treatment where the fungus is injected into the fish.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "fungal treatment by injection" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000199", "type" : "CLASS", "lbl" : "low sodium" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000112", "meta" : { "definition" : { "val" : "Experimental condition where the food of the zebrafish is manipulated in some way.", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/ZECO_0000267" ] }, "type" : "CLASS", "lbl" : "diet" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000233", "meta" : { "definition" : { "val" : "Fungal treatment where the fungus is introduced via the environment. For zebrafish this is the tank water.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "fungal treatment by exposure to environment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000113", "meta" : { "definition" : { "val" : "Experimental condition in which the availability of food is manipulated.", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/ZECO_0000267" ] }, "type" : "CLASS", "lbl" : "food availability" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000234", "meta" : { "definition" : { "val" : "Viral treatment where the virus is introduced via the environment. For zebrafish this is the tank water.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "viral treatment by exposure to environment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000194", "type" : "CLASS", "lbl" : "modified potassium composition" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000195", "type" : "CLASS", "lbl" : "high potassium" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000196", "type" : "CLASS", "lbl" : "low potassium" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000230", "meta" : { "definition" : { "val" : "Bacterial treatment where the bacteria are injected into the fish.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "bacterial treatment by injection" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000197", "type" : "CLASS", "lbl" : "modified sodium composition" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#consider", "type" : "PROPERTY", "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000190", "type" : "CLASS", "lbl" : "ion composition" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000191", "type" : "CLASS", "lbl" : "modified calcium composition" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000192", "type" : "CLASS", "lbl" : "high calcium" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000193", "type" : "CLASS", "lbl" : "low calcium" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000107", "meta" : { "definition" : { "val" : "Biological treatment in which fish have been infected with a fungus.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "fungal treatment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000228", "meta" : { "definition" : { "val" : "Low fat condition in which the amount of monounsaturated fat in the diet is reduced.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "low monounsaturated fat" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000108", "meta" : { "definition" : { "val" : "Biological treatment in which fish were raised in the absence of bacteria.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "germ free" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000229", "meta" : { "definition" : { "val" : "Experimental condition in which an anatomical structure, cell, or organ has sustained targeted physical change, usually through the use of an instrument.", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/ZECO_0000267" ] }, "type" : "CLASS", "lbl" : "physical alteration" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000109", "meta" : { "definition" : { "val" : "Biological treatment in which fish have been infected with protozoa.", "xrefs" : [ ] } }, "type" : "CLASS", "lbl" : "protozoan treatment" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000147", "type" : "CLASS", "lbl" : "light duration" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000148", "type" : "CLASS", "lbl" : "altered light dark cycle" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000149", "type" : "CLASS", "lbl" : "constant dark" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000143", "meta" : { "definition" : { "val" : "Experimental condition in which components of the fish have been removed and are maintained separately.", "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/ZECO_0000267" ] }, "type" : "CLASS", "lbl" : "in vitro culture" }, { "id" : "http://purl.obolibrary.org/obo/ZECO_0000264", "meta" : { "definition" : { "val" : "Experimental condition in which gravity forces are greater than in control conditions. 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