{
 "metadata": {
  "name": "pandoc_test"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "import os\n",
      "os.chdir(r\"D:\\workspace\\pandoc-citation-test\")\n",
      "print os.getcwd()"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "D:\\workspace\\pandoc-citation-test\n"
       ]
      }
     ],
     "prompt_number": 4
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "import pandoc\n",
      "pandoc.PANDOC_PATH = r'C:\\Program Files (x86)\\Pandoc\\bin\\pandoc.exe'\n",
      "import os.path\n",
      "os.path.exists(pandoc.PANDOC_PATH)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "pyout",
       "prompt_number": 31,
       "text": [
        "True"
       ]
      }
     ],
     "prompt_number": 31
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "fin = open(r\"d:\\workspace\\msb\\pages\\pandoc-test.md\")\n",
      "text = fin.read()\n",
      "fin.close()\n",
      "print text"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "title: Pandoc test\n",
        "datetime: 2012-10-11 11:44:00 +2\n",
        "\n",
        "# Citation test in Markdown + Pandoc\n",
        "\n",
        "I like strawberries [@Prudhomme2006].\n",
        "\n",
        "## Section 1\n",
        "\n",
        "Oranges are cool, as noted by Rayssiguier [-@Rayssiguier1989].\n",
        "\n",
        "And of course @Hadany2003 says this is good.\n",
        "\n",
        "Bye!\n",
        "\n",
        "## References\n"
       ]
      }
     ],
     "prompt_number": 25
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "doc = pandoc.Document()\n",
      "dir(doc)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "pyout",
       "prompt_number": 33,
       "text": [
        "['INPUT_FORMATS',\n",
        " 'OUTPUT_FORMATS',\n",
        " '__class__',\n",
        " '__delattr__',\n",
        " '__dict__',\n",
        " '__doc__',\n",
        " '__format__',\n",
        " '__getattribute__',\n",
        " '__hash__',\n",
        " '__init__',\n",
        " '__module__',\n",
        " '__new__',\n",
        " '__reduce__',\n",
        " '__reduce_ex__',\n",
        " '__repr__',\n",
        " '__setattr__',\n",
        " '__sizeof__',\n",
        " '__str__',\n",
        " '__subclasshook__',\n",
        " '__weakref__',\n",
        " '_content',\n",
        " '_format',\n",
        " '_input',\n",
        " '_output',\n",
        " '_register_formats',\n",
        " 'context',\n",
        " 'docbook',\n",
        " 'epub',\n",
        " 'html',\n",
        " 'html_lhs',\n",
        " 'latex',\n",
        " 'latex_lhs',\n",
        " 'man',\n",
        " 'markdown',\n",
        " 'markdown_lhs',\n",
        " 'mediawiki',\n",
        " 'native',\n",
        " 'odt',\n",
        " 'opendocument',\n",
        " 'plain',\n",
        " 'rst',\n",
        " 'rst_lhs',\n",
        " 'rtf',\n",
        " 's5',\n",
        " 'slidy',\n",
        " 'texinfo']"
       ]
      }
     ],
     "prompt_number": 33
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "doc.markdown = text\n",
      "print doc.html"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "ename": "WindowsError",
       "evalue": "[Error 2] The system cannot find the file specified",
       "output_type": "pyerr",
       "traceback": [
        "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m\n\u001b[1;31mWindowsError\u001b[0m                              Traceback (most recent call last)",
        "\u001b[1;32m<ipython-input-34-cd7911670ee8>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m()\u001b[0m\n\u001b[0;32m      1\u001b[0m \u001b[0mdoc\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mmarkdown\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mtext\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m----> 2\u001b[1;33m \u001b[1;32mprint\u001b[0m \u001b[0mdoc\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mhtml\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m",
        "\u001b[1;32mC:\\Python27\\lib\\site-packages\\pandoc\\core.pyc\u001b[0m in \u001b[0;36m<lambda>\u001b[1;34m(x, fmt)\u001b[0m\n\u001b[0;32m     33\u001b[0m                         \u001b[0mclean_fmt\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mfmt\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mreplace\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m'+'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'_'\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     34\u001b[0m \t\t\tsetattr(cls, clean_fmt, property(\n\u001b[1;32m---> 35\u001b[1;33m                                 \u001b[1;33m(\u001b[0m\u001b[1;32mlambda\u001b[0m \u001b[0mx\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mfmt\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mfmt\u001b[0m\u001b[1;33m:\u001b[0m \u001b[0mcls\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_output\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mx\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mfmt\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;31m# fget\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     36\u001b[0m \t\t\t\t(lambda x, y, fmt=fmt: cls._input(x, y, fmt)))) # fset\n\u001b[0;32m     37\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32mC:\\Python27\\lib\\site-packages\\pandoc\\core.pyc\u001b[0m in \u001b[0;36m_output\u001b[1;34m(self, format)\u001b[0m\n\u001b[0;32m     46\u001b[0m                         \u001b[1;33m[\u001b[0m\u001b[0mPANDOC_PATH\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'--from=%s'\u001b[0m \u001b[1;33m%\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_format\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'--to=%s'\u001b[0m \u001b[1;33m%\u001b[0m \u001b[0mformat\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     47\u001b[0m                         \u001b[0mstdin\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0msubprocess\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mPIPE\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 48\u001b[1;33m                         \u001b[0mstdout\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0msubprocess\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mPIPE\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mshell\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mTrue\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     49\u001b[0m \t\t)\n\u001b[0;32m     50\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32mC:\\Python27\\lib\\subprocess.pyc\u001b[0m in \u001b[0;36m__init__\u001b[1;34m(self, args, bufsize, executable, stdin, stdout, stderr, preexec_fn, close_fds, shell, cwd, env, universal_newlines, startupinfo, creationflags)\u001b[0m\n\u001b[0;32m    677\u001b[0m                             \u001b[0mp2cread\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mp2cwrite\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    678\u001b[0m                             \u001b[0mc2pread\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mc2pwrite\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 679\u001b[1;33m                             errread, errwrite)\n\u001b[0m\u001b[0;32m    680\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    681\u001b[0m         \u001b[1;32mif\u001b[0m \u001b[0mmswindows\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32mC:\\Python27\\lib\\subprocess.pyc\u001b[0m in \u001b[0;36m_execute_child\u001b[1;34m(self, args, executable, preexec_fn, close_fds, cwd, env, universal_newlines, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite)\u001b[0m\n\u001b[0;32m    894\u001b[0m                                          \u001b[0menv\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    895\u001b[0m                                          \u001b[0mcwd\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 896\u001b[1;33m                                          startupinfo)\n\u001b[0m\u001b[0;32m    897\u001b[0m             \u001b[1;32mexcept\u001b[0m \u001b[0mpywintypes\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0merror\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0me\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    898\u001b[0m                 \u001b[1;31m# Translate pywintypes.error to WindowsError, which is\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;31mWindowsError\u001b[0m: [Error 2] The system cannot find the file specified"
       ]
      }
     ],
     "prompt_number": 34
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "pandoc.PANDOC_PATH = r'D:\\workspace\\pandoc-citation-test\\Pandoc\\bin\\pandoc.exe'\n",
      "print pandoc.PANDOC_PATH\n",
      "os.path.exists(pandoc.PANDOC_PATH)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        " D:\\workspace\\pandoc-citation-test\\Pandoc\\bin\\pandoc.exe\n"
       ]
      },
      {
       "output_type": "pyout",
       "prompt_number": 30,
       "text": [
        "True"
       ]
      }
     ],
     "prompt_number": 30
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "pandoc.__file__"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "pyout",
       "prompt_number": 19,
       "text": [
        "'C:\\\\Python27\\\\lib\\\\site-packages\\\\pandoc\\\\__init__.pyc'"
       ]
      }
     ],
     "prompt_number": 19
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "print pandoc.PANDOC_PATH"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "D:\\workspace\\pandoc-citation-test\\Pandoc\\bin\\pandoc.exe\n"
       ]
      }
     ],
     "prompt_number": 27
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "def check_if_file_exists_on_path(filename):\n",
      "    import sys\n",
      "    from os.path import exists\n",
      "    if exists(filename):\n",
      "        return filename\n",
      "    paths = ['pandoc']\n",
      "    paths.extend(sys.path)\n",
      "    print paths\n",
      "    for p in paths:\n",
      "        if exists(p + '/' + filename):\n",
      "            return p + '/' + filename\n",
      "    raise IOError(\"File not found on path: %s\" % filename)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 19
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "pwd"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "pyout",
       "prompt_number": 11,
       "text": [
        "u'C:\\\\Users\\\\yoavram\\\\Desktop'"
       ]
      }
     ],
     "prompt_number": 11
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "filename = r'd:\\library.bib'#'bdb.py'#'Voelkl.pdf'"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 16
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "check_if_file_exists_on_path(filename)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "pyout",
       "prompt_number": 20,
       "text": [
        "'d:\\\\library.bib'"
       ]
      }
     ],
     "prompt_number": 20
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "import re\n",
      "pattern = re.compile('@\\w+\\d\\d\\d\\d')"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 21
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "m=pattern.search(\"dashjdhaskjdhakjsdhaskj\")\n",
      "m"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 33
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "csl=\"chicago-full.csl\"\n",
      "csl"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "pyout",
       "prompt_number": 2,
       "text": [
        "'chicago-full.csl'"
       ]
      }
     ],
     "prompt_number": 2
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "csl[:-4]+\".abbr\""
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "pyout",
       "prompt_number": 4,
       "text": [
        "'chicago-full.abbr'"
       ]
      }
     ],
     "prompt_number": 4
    }
   ],
   "metadata": {}
  }
 ]
}