{ "nbformat": 4, "nbformat_minor": 0, "metadata": { "colab": { "name": "dutch-f3-from-opendtect.ipynb", "provenance": [], "collapsed_sections": [], "authorship_tag": "ABX9TyPa6DRzoY5uqx3oQ0zobAhx", "include_colab_link": true }, "kernelspec": { "name": "python3", "display_name": "Python 3" } }, "cells": [ { "cell_type": "markdown", "metadata": { "id": "view-in-github", "colab_type": "text" }, "source": [ "\"Open" ] }, { "cell_type": "markdown", "metadata": { "id": "SZmLH-2w7DzC", "colab_type": "text" }, "source": [ "## Reference\n", "\n", "* To use `PyDrive` to upload **file** from Colab to Drive: [Ask Forum](https://raspberrypi.stackexchange.com/questions/14186/use-pydrive-to-upload-files-to-google-drive-folder/26644#26644)\n", "\n", "* To use `PyDrive` to upload **folder** from Colab to Drive: [Tutorial](https://colab.research.google.com/drive/1un9uWAZU0jf2viLnMduYz-tpR0UCNyn9)" ] }, { "cell_type": "markdown", "metadata": { "id": "bpKTNjTcmpza", "colab_type": "text" }, "source": [ "Code to open Google Drive data from its ID (URL):
\n", "`wget --load-cookies /tmp/cookies.txt \"https://docs.google.com/uc?export=download&confirm=$(wget --quiet --save-cookies /tmp/cookies.txt --keep-session-cookies --no-check-certificate 'https://docs.google.com/uc?export=download&id=FILEID' -O- | sed -rn 's/.*confirm=([0-9A-Za-z_]+).*/\\1\\n/p')&id=FILEID\" -O FILENAME && rm -rf /tmp/cookies.txt`" ] }, { "cell_type": "code", "metadata": { "id": "CQOFN8UplnBC", "colab_type": "code", "colab": { "base_uri": "https://localhost:8080/", "height": 440 }, "outputId": "431e348a-6192-4dc8-e40e-0e1e4fd6d247" }, "source": [ "!wget --load-cookies /tmp/cookies.txt \"https://docs.google.com/uc?export=download&confirm=$(wget --quiet --save-cookies /tmp/cookies.txt --keep-session-cookies --no-check-certificate 'https://docs.google.com/uc?export=download&id=0B2QlmHOqpoj1LW52dWlCOWpPSkE' -O- | sed -rn 's/.*confirm=([0-9A-Za-z_]+).*/\\1\\n/p')&id=0B2QlmHOqpoj1LW52dWlCOWpPSkE\" -O Dutch_F3.zip && rm -rf /tmp/cookies.txt" ], "execution_count": 1, "outputs": [ { "output_type": "stream", "text": [ "--2020-05-29 07:24:33-- https://docs.google.com/uc?export=download&confirm=Nqzp&id=0B2QlmHOqpoj1LW52dWlCOWpPSkE\n", "Resolving docs.google.com (docs.google.com)... 74.125.142.113, 74.125.142.138, 74.125.142.100, ...\n", "Connecting to docs.google.com (docs.google.com)|74.125.142.113|:443... connected.\n", "HTTP request sent, awaiting response... 302 Moved Temporarily\n", "Location: https://doc-0k-4g-docs.googleusercontent.com/docs/securesc/laa1modl18ugoo7seh8d8r63g5pbv5vv/3rtodprmkaf57o8hl0kbcjb991seocpb/1590737025000/17464323907045469692/01757925429401430695Z/0B2QlmHOqpoj1LW52dWlCOWpPSkE?e=download [following]\n", "--2020-05-29 07:24:34-- https://doc-0k-4g-docs.googleusercontent.com/docs/securesc/laa1modl18ugoo7seh8d8r63g5pbv5vv/3rtodprmkaf57o8hl0kbcjb991seocpb/1590737025000/17464323907045469692/01757925429401430695Z/0B2QlmHOqpoj1LW52dWlCOWpPSkE?e=download\n", "Resolving doc-0k-4g-docs.googleusercontent.com (doc-0k-4g-docs.googleusercontent.com)... 74.125.195.132, 2607:f8b0:400e:c09::84\n", "Connecting to doc-0k-4g-docs.googleusercontent.com (doc-0k-4g-docs.googleusercontent.com)|74.125.195.132|:443... connected.\n", "HTTP request sent, awaiting response... 302 Found\n", "Location: https://docs.google.com/nonceSigner?nonce=kgf4u31qjul8u&continue=https://doc-0k-4g-docs.googleusercontent.com/docs/securesc/laa1modl18ugoo7seh8d8r63g5pbv5vv/3rtodprmkaf57o8hl0kbcjb991seocpb/1590737025000/17464323907045469692/01757925429401430695Z/0B2QlmHOqpoj1LW52dWlCOWpPSkE?e%3Ddownload&hash=4qdk4k121fqdorb3lbls0a1j0e622aoh [following]\n", "--2020-05-29 07:24:34-- https://docs.google.com/nonceSigner?nonce=kgf4u31qjul8u&continue=https://doc-0k-4g-docs.googleusercontent.com/docs/securesc/laa1modl18ugoo7seh8d8r63g5pbv5vv/3rtodprmkaf57o8hl0kbcjb991seocpb/1590737025000/17464323907045469692/01757925429401430695Z/0B2QlmHOqpoj1LW52dWlCOWpPSkE?e%3Ddownload&hash=4qdk4k121fqdorb3lbls0a1j0e622aoh\n", "Connecting to docs.google.com (docs.google.com)|74.125.142.113|:443... connected.\n", "HTTP request sent, awaiting response... 302 Found\n", "Location: https://doc-0k-4g-docs.googleusercontent.com/docs/securesc/laa1modl18ugoo7seh8d8r63g5pbv5vv/3rtodprmkaf57o8hl0kbcjb991seocpb/1590737025000/17464323907045469692/01757925429401430695Z/0B2QlmHOqpoj1LW52dWlCOWpPSkE?e=download&nonce=kgf4u31qjul8u&user=01757925429401430695Z&hash=g4agmjgrjakq6bd36654fas4r4ghs451 [following]\n", "--2020-05-29 07:24:34-- https://doc-0k-4g-docs.googleusercontent.com/docs/securesc/laa1modl18ugoo7seh8d8r63g5pbv5vv/3rtodprmkaf57o8hl0kbcjb991seocpb/1590737025000/17464323907045469692/01757925429401430695Z/0B2QlmHOqpoj1LW52dWlCOWpPSkE?e=download&nonce=kgf4u31qjul8u&user=01757925429401430695Z&hash=g4agmjgrjakq6bd36654fas4r4ghs451\n", "Connecting to doc-0k-4g-docs.googleusercontent.com (doc-0k-4g-docs.googleusercontent.com)|74.125.195.132|:443... connected.\n", "HTTP request sent, awaiting response... 200 OK\n", "Length: unspecified [application/zip]\n", "Saving to: ‘Dutch_F3.zip’\n", "\n", "Dutch_F3.zip [ <=> ] 5.77G 86.7MB/s in 83s \n", "\n", "2020-05-29 07:25:57 (71.3 MB/s) - ‘Dutch_F3.zip’ saved [6196043143]\n", "\n" ], "name": "stdout" } ] }, { "cell_type": "code", "metadata": { "id": "I_U37bGanpzY", "colab_type": "code", "colab": { "base_uri": "https://localhost:8080/", "height": 1000 }, "outputId": "45172113-b5cc-4cb9-a7e1-1ef447e2bfc4" }, "source": [ "!unzip '/content/Dutch_F3.zip' -d '/content/dutch_f3'" ], "execution_count": 2, "outputs": [ { "output_type": "stream", "text": [ "Archive: /content/Dutch_F3.zip\n", " creating: /content/dutch_f3/F3_Demo_2016_training_v6/\n", " inflating: /content/dutch_f3/F3_Demo_2016_training_v6/.defs \n", " inflating: /content/dutch_f3/F3_Demo_2016_training_v6/.fileformats \n", " inflating: /content/dutch_f3/F3_Demo_2016_training_v6/.omf \n", " inflating: /content/dutch_f3/F3_Demo_2016_training_v6/.omf.bak \n", " inflating: 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/content/dutch_f3/F3_Demo_2016_training_v6/WellInfo/F06-1^7.wll \n", " inflating: /content/dutch_f3/F3_Demo_2016_training_v6/WellInfo/F06-1_BU.wlm \n" ], "name": "stdout" } ] }, { "cell_type": "code", "metadata": { "id": "fwkl4GPrpD-L", "colab_type": "code", "colab": {} }, "source": [ "!unzip /content/dutch_f3/F3_Demo_2016_training_v6/Rawdata/Well_data/All_wells_RawData.zip -d /content/dutch_f3/wells" ], "execution_count": 0, "outputs": [] }, { "cell_type": "markdown", "metadata": { "id": "23lEIYdrW4LP", "colab_type": "text" }, "source": [ "## Authorize Google Drive account" ] }, { "cell_type": "code", "metadata": { "id": "qVw5qpMhqZXb", "colab_type": "code", "colab": { "base_uri": "https://localhost:8080/", "height": 121 }, "outputId": "b0526cef-9f46-4201-abee-7b2682a0b2b5" }, "source": [ "from google.colab import drive\n", "drive.mount('/content/drive')" ], "execution_count": 3, "outputs": [ { "output_type": "stream", "text": [ "Go to this URL in a browser: https://accounts.google.com/o/oauth2/auth?client_id=947318989803-6bn6qk8qdgf4n4g3pfee6491hc0brc4i.apps.googleusercontent.com&redirect_uri=urn%3aietf%3awg%3aoauth%3a2.0%3aoob&response_type=code&scope=email%20https%3a%2f%2fwww.googleapis.com%2fauth%2fdocs.test%20https%3a%2f%2fwww.googleapis.com%2fauth%2fdrive%20https%3a%2f%2fwww.googleapis.com%2fauth%2fdrive.photos.readonly%20https%3a%2f%2fwww.googleapis.com%2fauth%2fpeopleapi.readonly\n", "\n", "Enter your authorization code:\n", "··········\n", "Mounted at /content/drive\n" ], "name": "stdout" } ] }, { "cell_type": "markdown", "metadata": { "id": "aYsyAu5aW8pj", "colab_type": "text" }, "source": [ "## Import PyDrive and Authenticate" ] }, { "cell_type": "code", "metadata": { "id": "0L6-HjIvryo9", "colab_type": "code", "colab": {} }, "source": [ "from pydrive.auth import GoogleAuth\n", "from pydrive.drive import GoogleDrive\n", "from google.colab import auth\n", "from oauth2client.client import GoogleCredentials\n", "\n", "# authenticate\n", "auth.authenticate_user()\n", "gauth = GoogleAuth()\n", "gauth.credentials = GoogleCredentials.get_application_default()\n", "drive = GoogleDrive(gauth)" ], "execution_count": 0, "outputs": [] }, { "cell_type": "markdown", "metadata": { "id": "S6wbwpxLXNPp", "colab_type": "text" }, "source": [ "## List FID of each folder and file in my Google Drive" ] }, { "cell_type": "code", "metadata": { "id": "CfBbyDuJqkQe", "colab_type": "code", "colab": { "base_uri": "https://localhost:8080/", "height": 1000 }, "outputId": "f0011e62-2fc0-497c-84f1-4e2ed737c62e" }, "source": [ "# get the FID of a folder in Gdrive\n", "\n", "file_list = drive.ListFile({'q': \"'root' in parents and trashed=false\"}).GetList()\n", "for file1 in file_list: \n", " print ('title: %s, id: %s' % (file1['title'], file1['id']))" ], "execution_count": 6, "outputs": [ { "output_type": "stream", "text": [ "title: dutchlas.zip, id: 1RN5eHovw_iAG6kdblccobjwANfd5v4yg\n", "title: Dutch F3, id: 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"import os\n", "import sys" ], "execution_count": 0, "outputs": [] }, { "cell_type": "code", "metadata": { "id": "OMat07cBXdb7", "colab_type": "code", "colab": {} }, "source": [ "zipname = 'horizons'\n", "\n", "def zipfolder(foldername, target_dir): \n", " zipobj = zipfile.ZipFile(foldername + '.zip', 'w', zipfile.ZIP_DEFLATED)\n", " rootlen = len(target_dir) + 1\n", " for base, dirs, files in os.walk(target_dir):\n", " for file in files:\n", " fn = os.path.join(base, file)\n", " zipobj.write(fn, fn[rootlen:])\n", "\n", "zipfolder(zipname, '/content/dutch_f3/F3_Demo_2016_training_v6/Rawdata/Surface_data')" ], "execution_count": 0, "outputs": [] }, { "cell_type": "code", "metadata": { "id": "3ePtcRqUu16H", "colab_type": "code", "colab": {} }, "source": [ "# Create & upload a file text file.\n", "fid = '1Ri44QHEDrDm7Bijh0FHKCOb-9XF5sOH8'\n", "\n", "file1 = drive.CreateFile({\"parents\": [{\"kind\": \"drive#fileLink\", \"id\": fid}]})\n", "file1.SetContentFile(zipname+\".zip\")\n", "file1.Upload()" ], "execution_count": 0, "outputs": [] }, { "cell_type": "markdown", "metadata": { "id": "9LrDQwNeYyuu", "colab_type": "text" }, "source": [ "## Export File from Colab to Drive" ] }, { "cell_type": "code", "metadata": { "id": "tf7IS9B3Y30K", "colab_type": "code", "colab": {} }, "source": [ "filename = 'faults.xyt'\n", "\n", "f = drive.CreateFile({'title': filename, 'parents': [{'id': fid}]})\n", "f.SetContentFile('/content/dutch_f3/F3_Demo_2016_training_v6/Rawdata/Faults/FaultA.xyt')\n", "f.Upload()" ], "execution_count": 0, "outputs": [] } ] }