generateVoxelComplexTables.cpp File Reference

#include <iostream>
#include <vector>
#include "DGtal/helpers/StdDefs.h"
#include "DGtal/topology/VoxelComplexFunctions.h"
#include "DGtal/topology/tables/NeighborhoodTablesGenerators.h"

Include dependency graph for generateVoxelComplexTables.cpp:

Go to the source code of this file.

Functions
int	main (int argc, char **argv)

Detailed Description

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

Author

Pablo Hernandez-Cerdan (pablo.nosp@m..her.nosp@m.nande.nosp@m.z.ce.nosp@m.rdan@.nosp@m.outl.nosp@m.ook.c.nosp@m.om) Institute of Fundamental Sciences. Massey University. Palmerston North, New Zealand

Date

2018/01/01

Creates precomputed tables for all possible configurations of the neighborhood of a voxel in 3D with a topology of 26 neighbors. The table is a map between all this configurations and the result of applying an input selected predicate function to a center voxel. The options for the functions are the Skel function from

See also

VoxelComplexFunctions.h.

The options are: skelFunction = functions::oneIsthmus<VoxelComplex>; skelFunction = functions::twoIsthmus<VoxelComplex>; skelFunction = functions::skelIsthmus<VoxelComplex>;

where the latest is equivalent to (oneIsthmus OR twoIsthmus)

Isthmuses are implemented to work with 3D cubical(voxel) complexes. Right now the tables are only generated with 26_6 topology, but other 3D topologies can be added.

This file is part of the DGtal library.

Definition in file generateVoxelComplexTables.cpp.

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

Definition at line 61 of file generateVoxelComplexTables.cpp.

{
  typedef std::bitset<67108864> ConfigMap; // 2^26
 
  using namespace Z3i;
  using VoxelComplex = VoxelComplex<KSpace>;
 
  std::function< bool(
                 const VoxelComplex & ,
                 const typename VoxelComplex::Cell & )
               > skelFunction;
  string error_message(
      "Provide one of the following arguments for select function:\n"
      "- skelIsthmus \n"
      "- oneIsthmus \n"
      "- twoIsthmus \n");
  if (argc != 2 ){
    cout << error_message << std::endl;
    return 1;
  }
  std::string input_str = std::string(argv[1]);
  if (input_str == "skelIsthmus")
    skelFunction = functions::skelIsthmus<VoxelComplex>;
  else if (input_str == "oneIsthmus")
    skelFunction = functions::oneIsthmus<VoxelComplex>;
  else if (input_str == "twoIsthmus")
    skelFunction = functions::twoIsthmus<VoxelComplex>;
  else{
    cout << error_message << endl;
    return 1;
  }
 
  trace.beginBlock ( "Generate " + input_str + " table for 26_6 topology" );
  // Too big for stack. Use heap instead.
  auto table26_6 = make_shared<ConfigMap>();
  functions::generateVoxelComplexTable< VoxelComplex >(
      *table26_6,
      skelFunction );
 
  string filename = input_str + "_table26_6.txt";
  trace.info() << "Save to file... " + filename << std::endl;
  ofstream file26_6( filename );
  file26_6 << *table26_6;
  file26_6.close();
 
  trace.endBlock();
 
  return 0;
}

References DGtal::Trace::beginBlock(), DGtal::Trace::endBlock(), DGtal::Trace::info(), and DGtal::trace.