testImageFactoryFromHDF5.cpp File Reference

A test file for ImageFactoryFromHDF5. More...

#include <iostream>
#include "DGtal/base/Common.h"
#include "DGtal/helpers/StdDefs.h"
#include "DGtal/images/ImageSelector.h"
#include "DGtal/images/ImageFactoryFromHDF5.h"
#include "DGtal/images/ImageCache.h"
#include "DGtal/images/TiledImage.h"
#include "ConfigTest.h"

Include dependency graph for testImageFactoryFromHDF5.cpp:

Go to the source code of this file.

Macros
#define	H5FILE_NAME   "testImageFactoryFromHDF5.h5"
#define	DATASETNAME_2D   "Int32Array2D"
#define	NX_2D   6
#define	NY_2D   5
#define	RANK_2D   2
#define	DATASETNAME_2D_TILED   "Int64Array2D"
#define	RANK_2D_TILED   2
#define	_NX_2D_TILED   16
#define	_NY_2D_TILED   16
#define	H5FILE_NAME_3D_TILED_EASY_READING   "testImageFactoryFromHDF5_TILED_3D_for_easy_reading.h5"
#define	H5FILE_NAME_3D_TILED   "testImageFactoryFromHDF5_TILED_3D.h5"
#define	DATASETNAME_3D_TILED   "DoubleArray3D"
#define	NX_3D_TILED   10
#define	NY_3D_TILED   8
#define	NZ_3D_TILED   6
#define	RANK_3D_TILED   3

Functions
bool	writeHDF5_2D ()
bool	writeHDF5_2D_TILED (const std::string &_H5FILE_NAME_2D_TILED)
bool	writeHDF5_3D_TILED_for_easy_reading ()
bool	writeHDF5_3D_TILED ()
bool	test2D_int32 ()
bool	testTiledImage2D_int64 ()
bool	testTiledImage3D_double ()
int	main (int argc, char **argv)

Detailed Description

A test file for ImageFactoryFromHDF5.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

Author

Martial Tola (marti.nosp@m.al.t.nosp@m.ola@l.nosp@m.iris.nosp@m..cnrs.nosp@m..fr ) Laboratoire d'InfoRmatique en Image et Systèmes d'information - LIRIS (CNRS, UMR 5205), CNRS, France

Date

2013/05/16

This file is part of the DGtal library.

Definition in file testImageFactoryFromHDF5.cpp.

Macro Definition Documentation

_NX_2D_TILED

#define _NX_2D_TILED   16

Definition at line 121 of file testImageFactoryFromHDF5.cpp.

_NY_2D_TILED

#define _NY_2D_TILED   16

Definition at line 122 of file testImageFactoryFromHDF5.cpp.

DATASETNAME_2D

#define DATASETNAME_2D   "Int32Array2D"

Definition at line 51 of file testImageFactoryFromHDF5.cpp.

DATASETNAME_2D_TILED

#define DATASETNAME_2D_TILED   "Int64Array2D"

Definition at line 119 of file testImageFactoryFromHDF5.cpp.

DATASETNAME_3D_TILED

#define DATASETNAME_3D_TILED   "DoubleArray3D"

Definition at line 184 of file testImageFactoryFromHDF5.cpp.

H5FILE_NAME

#define H5FILE_NAME   "testImageFactoryFromHDF5.h5"

Definition at line 49 of file testImageFactoryFromHDF5.cpp.

H5FILE_NAME_3D_TILED

#define H5FILE_NAME_3D_TILED   "testImageFactoryFromHDF5_TILED_3D.h5"

Examples

images/exampleImageFactoryFromHDF5.cpp.

Definition at line 182 of file testImageFactoryFromHDF5.cpp.

H5FILE_NAME_3D_TILED_EASY_READING

#define H5FILE_NAME_3D_TILED_EASY_READING   "testImageFactoryFromHDF5_TILED_3D_for_easy_reading.h5"

Definition at line 181 of file testImageFactoryFromHDF5.cpp.

NX_2D

#define NX_2D   6

Definition at line 52 of file testImageFactoryFromHDF5.cpp.

NX_3D_TILED

#define NX_3D_TILED   10

Examples

images/exampleImageFactoryFromHDF5.cpp.

Definition at line 185 of file testImageFactoryFromHDF5.cpp.

NY_2D

#define NY_2D   5

Definition at line 53 of file testImageFactoryFromHDF5.cpp.

NY_3D_TILED

#define NY_3D_TILED   8

Examples

images/exampleImageFactoryFromHDF5.cpp.

Definition at line 186 of file testImageFactoryFromHDF5.cpp.

NZ_3D_TILED

#define NZ_3D_TILED   6

Examples

images/exampleImageFactoryFromHDF5.cpp.

Definition at line 187 of file testImageFactoryFromHDF5.cpp.

RANK_2D

#define RANK_2D   2

Definition at line 54 of file testImageFactoryFromHDF5.cpp.

RANK_2D_TILED

#define RANK_2D_TILED   2

Definition at line 120 of file testImageFactoryFromHDF5.cpp.

RANK_3D_TILED

#define RANK_3D_TILED   3

Examples

images/exampleImageFactoryFromHDF5.cpp.

Definition at line 188 of file testImageFactoryFromHDF5.cpp.

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

Definition at line 588 of file testImageFactoryFromHDF5.cpp.

{
    trace.beginBlock ( "Testing class ImageFactoryFromHDF5" );
    trace.info() << "Args:";
    for ( int i = 0; i < argc; ++i )
        trace.info() << " " << argv[ i ];
    trace.info() << endl;
 
    bool res = true;
    res = res && writeHDF5_2D() && test2D_int32();
 
    res = res && writeHDF5_2D_TILED("testImageFactoryFromHDF5_TILED_2D.h5") && testTiledImage2D_int64();
 
    res = res && writeHDF5_3D_TILED_for_easy_reading();
    res = res && writeHDF5_3D_TILED();
    res = res && testTiledImage3D_double();
 
    trace.emphase() << ( res ? "Passed." : "Error." ) << endl;
    trace.endBlock();
    return res ? 0 : 1;
}

References DGtal::Trace::beginBlock(), DGtal::Trace::emphase(), DGtal::Trace::endBlock(), DGtal::Trace::info(), test2D_int32(), testTiledImage2D_int64(), testTiledImage3D_double(), DGtal::trace, writeHDF5_2D(), writeHDF5_2D_TILED(), writeHDF5_3D_TILED(), and writeHDF5_3D_TILED_for_easy_reading().

test2D_int32()

bool test2D_int32

(

)

Definition at line 308 of file testImageFactoryFromHDF5.cpp.

{
  unsigned int nbok = 0;
  unsigned int nb = 0;
 
  trace.beginBlock("Testing ImageFactoryFromHDF5 (2D)");
 
  typedef ImageSelector<Z2i::Domain, DGtal::int32_t>::Type Image;
 
  // 1) ImageFactoryFromHDF5
  typedef ImageFactoryFromHDF5<Image> MyImageFactoryFromHDF5;
  MyImageFactoryFromHDF5 factImage(H5FILE_NAME, DATASETNAME_2D);
 
  typedef MyImageFactoryFromHDF5::OutputImage OutputImage;
 
  Z2i::Domain domain1(Z2i::Point(0,0), Z2i::Point(1,1));
  OutputImage *image1 = factImage.requestImage(domain1);
  OutputImage::ConstRange r1 = image1->constRange();
  cout << "image1: "; std::copy( r1.begin(), r1.end(), std::ostream_iterator<int>(cout,", ") ); cout << endl;
 
  Z2i::Domain domain1b(Z2i::Point(0,0), Z2i::Point(2,2));
  OutputImage *image1b = factImage.requestImage(domain1b);
  OutputImage::ConstRange r1b = image1b->constRange();
  cout << "image1b: "; std::copy( r1b.begin(), r1b.end(), std::ostream_iterator<int>(cout,", ") ); cout << endl;
 
  Z2i::Domain domain2(Z2i::Point(2,0), Z2i::Point(3,1));
  OutputImage *image2 = factImage.requestImage(domain2);
  OutputImage::ConstRange r2 = image2->constRange();
  cout << "image2: "; std::copy( r2.begin(), r2.end(), std::ostream_iterator<int>(cout,", ") ); cout << endl;
 
  Z2i::Domain domain3(Z2i::Point(0,2), Z2i::Point(1,3));
  OutputImage *image3 = factImage.requestImage(domain3);
  OutputImage::ConstRange r3 = image3->constRange();
  cout << "image3: "; std::copy( r3.begin(), r3.end(), std::ostream_iterator<int>(cout,", ") ); cout << endl;
 
  Z2i::Domain domain4(Z2i::Point(2,2), Z2i::Point(3,3));
  OutputImage *image4 = factImage.requestImage(domain4);
  OutputImage::ConstRange r4 = image4->constRange();
  cout << "image4: "; std::copy( r4.begin(), r4.end(), std::ostream_iterator<int>(cout,", ") ); cout << endl;
 
  Z2i::Domain domain5(Z2i::Point(3,2), Z2i::Point(5,4));
  OutputImage *image5 = factImage.requestImage(domain5);
  OutputImage::ConstRange r5 = image5->constRange();
  cout << "image5: "; std::copy( r5.begin(), r5.end(), std::ostream_iterator<int>(cout,", ") ); cout << endl;
 
  // 2) ImageCache with DGtal::CACHE_READ_POLICY_LAST, DGtal::CACHE_WRITE_POLICY_WT
  trace.info() << endl << "ImageCache with DGtal::CACHE_READ_POLICY_LAST, DGtal::CACHE_WRITE_POLICY_WT" << endl;
 
  typedef ImageCacheReadPolicyLAST<OutputImage, MyImageFactoryFromHDF5> MyImageCacheReadPolicyLAST;
  typedef ImageCacheWritePolicyWT<OutputImage, MyImageFactoryFromHDF5> MyImageCacheWritePolicyWT;
  MyImageCacheReadPolicyLAST imageCacheReadPolicyLAST(factImage);
  MyImageCacheWritePolicyWT imageCacheWritePolicyWT(factImage);
 
  typedef ImageCache<OutputImage, MyImageFactoryFromHDF5, MyImageCacheReadPolicyLAST, MyImageCacheWritePolicyWT> MyImageCache;
  MyImageCache imageCache(factImage, imageCacheReadPolicyLAST, imageCacheWritePolicyWT);
  OutputImage::Value aValue;
 
  trace.info() << "READING from cache (empty cache): " << imageCache << endl;
  if (imageCache.read(Z2i::Point(2,2), aValue))
    trace.info() << "READ: Point 2,2 is in an image from cache, value: " << aValue << endl;
  else
    trace.info() << "READ: Point 2,2 is not in an image from cache." << endl;
  nbok += (imageCache.read(Z2i::Point(2,2), aValue) == false) ? 1 : 0;
  nb++;
 
  trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
  imageCache.update(domain1); // image1
 
  trace.info() << "READING from cache (not empty but wrong domain): " << imageCache << endl;
  if (imageCache.read(Z2i::Point(2,2), aValue))
    trace.info() << "READ: Point 2,2 is in an image from cache, value: " << aValue << endl;
  else
    trace.info() << "READ: Point 2,2 is not in an image from cache." << endl;
  nbok += (imageCache.read(Z2i::Point(2,2), aValue) == false) ? 1 : 0;
  nb++;
 
  trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
  imageCache.update(domain4); // image4
 
  trace.info() << "READING from cache (not empty but good domain): " << imageCache << endl;
  if (imageCache.read(Z2i::Point(2,2), aValue))
    trace.info() << "READ: Point 2,2 is in an image from cache, value: " << aValue << endl;
  else
    trace.info() << "READ: Point 2,2 is not in an image from cache." << endl;
  nbok += ( (imageCache.read(Z2i::Point(2,2), aValue) && (aValue == 4)) == true ) ? 1 : 0;
  nb++;
 
  trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
  trace.info() << "WRITING from cache (not empty but good domain): " << imageCache << endl;
  aValue = 22;
  if (imageCache.write(Z2i::Point(2,2), aValue))
    trace.info() << "WRITE: Point 2,2 is in an image from cache, value: " << aValue << endl;
  else
    trace.info() << "WRITE: Point 2,2 is not in an image from cache." << endl;
  nbok += ( (imageCache.read(Z2i::Point(2,2), aValue) && (aValue == 22)) == true ) ? 1 : 0;
  nb++;
 
  trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
  imageCache.update(domain3); // image3
 
  trace.info() << "WRITING from cache (not empty but wrong domain): " << imageCache << endl;
  aValue = 22;
  if (imageCache.write(Z2i::Point(2,2), aValue))
    trace.info() << "WRITE: Point 2,2 is in an image from cache, value: " << aValue << endl;
  else
    trace.info() << "WRITE: Point 2,2 is not in an image from cache." << endl;
  nbok += (imageCache.read(Z2i::Point(2,2), aValue) == false) ? 1 : 0;
  nb++;
 
  trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
  imageCache.update(domain1); // image1
 
  trace.info() << "WRITING from cache (not empty but good domain): " << imageCache << endl;
  aValue = 7;
  if (imageCache.write(Z2i::Point(0,0), aValue))
    trace.info() << "WRITE: Point 0,0 is in an image from cache, value: " << aValue << endl;
  else
    trace.info() << "WRITE: Point 0,0 is not in an image from cache." << endl;
  nbok += ( (imageCache.read(Z2i::Point(0,0), aValue) && (aValue == 7)) == true ) ? 1 : 0;
  nb++;
 
  trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
  trace.endBlock();
 
  return nbok == nb;
}

References DGtal::Trace::beginBlock(), DATASETNAME_2D, DGtal::Trace::endBlock(), H5FILE_NAME, DGtal::Trace::info(), and DGtal::trace.

Referenced by main().

testTiledImage2D_int64()

bool testTiledImage2D_int64

(

)

Definition at line 441 of file testImageFactoryFromHDF5.cpp.

{
    unsigned int nbok = 0;
    unsigned int nb = 0;
 
    trace.beginBlock("Testing TiledImage with ImageFactoryFromHDF5 (2D)");
 
    typedef ImageSelector<Z2i::Domain, DGtal::int64_t>::Type Image;
 
    typedef ImageFactoryFromHDF5<Image> MyImageFactoryFromHDF5;
    MyImageFactoryFromHDF5 factImage("testImageFactoryFromHDF5_TILED_2D.h5", DATASETNAME_2D_TILED);
 
    typedef MyImageFactoryFromHDF5::OutputImage OutputImage;
 
    typedef ImageCacheReadPolicyFIFO<OutputImage, MyImageFactoryFromHDF5> MyImageCacheReadPolicyFIFO;
    typedef ImageCacheWritePolicyWT<OutputImage, MyImageFactoryFromHDF5> MyImageCacheWritePolicyWT;
    MyImageCacheReadPolicyFIFO imageCacheReadPolicyFIFO(factImage, 2);
    MyImageCacheWritePolicyWT imageCacheWritePolicyWT(factImage);
 
    typedef TiledImage<Image, MyImageFactoryFromHDF5, MyImageCacheReadPolicyFIFO, MyImageCacheWritePolicyWT> MyTiledImage;
    BOOST_CONCEPT_ASSERT(( concepts::CImage< MyTiledImage > ));
    MyTiledImage tiledImage(factImage, imageCacheReadPolicyFIFO, imageCacheWritePolicyWT, 4);
 
    typedef MyTiledImage::OutputImage OutputImage;
    OutputImage::Value aValue;
 
    trace.info() << "Read value for Point 3,1: " << tiledImage(Z2i::Point(3,1)) << endl;
    nbok += (tiledImage(Z2i::Point(3,1)) == 20) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.info() << "Read value for Point 9,5: " << tiledImage(Z2i::Point(9,5)) << endl;
    nbok += (tiledImage(Z2i::Point(9,5)) == 90) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    aValue = 1; tiledImage.setValue(Z2i::Point(10,6), aValue);
    trace.info() << "Write value for Point 10,6: " << aValue << endl;
    nbok += (tiledImage(Z2i::Point(10,6)) == 1) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.info() << "Read value for Point 1,2: " << tiledImage(Z2i::Point(1,2)) << endl;
    nbok += (tiledImage(Z2i::Point(1,2)) == 34) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.info() << "Read value for Point 15,0: " << tiledImage(Z2i::Point(15,0)) << endl;
    nbok += (tiledImage(Z2i::Point(15,0)) == 16) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    aValue = 128; tiledImage.setValue(Z2i::Point(15,0), aValue);
    trace.info() << "Write value for Point 15,0: " << aValue << endl;
    nbok += (tiledImage(Z2i::Point(15,0)) == 128) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.endBlock();
 
    return nbok == nb;
}

References DGtal::Trace::beginBlock(), DATASETNAME_2D_TILED, DGtal::Trace::endBlock(), DGtal::Trace::info(), and DGtal::trace.

Referenced by main().

testTiledImage3D_double()

bool testTiledImage3D_double

(

)

Definition at line 510 of file testImageFactoryFromHDF5.cpp.

{
    unsigned int nbok = 0;
    unsigned int nb = 0;
 
    trace.beginBlock("Testing TiledImage with ImageFactoryFromHDF5 (3D)");
 
    typedef ImageSelector<Z3i::Domain, double>::Type Image;
 
    typedef ImageFactoryFromHDF5<Image> MyImageFactoryFromHDF5;
    MyImageFactoryFromHDF5 factImage(H5FILE_NAME_3D_TILED, DATASETNAME_3D_TILED);
 
    typedef MyImageFactoryFromHDF5::OutputImage OutputImage;
 
    typedef ImageCacheReadPolicyFIFO<OutputImage, MyImageFactoryFromHDF5> MyImageCacheReadPolicyFIFO;
    typedef ImageCacheWritePolicyWT<OutputImage, MyImageFactoryFromHDF5> MyImageCacheWritePolicyWT;
    MyImageCacheReadPolicyFIFO imageCacheReadPolicyFIFO(factImage, 2);
    MyImageCacheWritePolicyWT imageCacheWritePolicyWT(factImage);
 
    typedef TiledImage<Image, MyImageFactoryFromHDF5, MyImageCacheReadPolicyFIFO, MyImageCacheWritePolicyWT> MyTiledImage;
    BOOST_CONCEPT_ASSERT(( concepts::CImage< MyTiledImage > ));
    MyTiledImage tiledImage(factImage, imageCacheReadPolicyFIFO, imageCacheWritePolicyWT, 2);
 
    typedef MyTiledImage::OutputImage OutputImage;
    OutputImage::Value aValue;
 
    trace.info() << "Read value for Point 0,0,0: " << tiledImage(Z3i::Point(0,0,0)) << endl;
    nbok += (tiledImage(Z3i::Point(0,0,0)) == 1) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.info() << "Read value for Point 3,1,0: " << tiledImage(Z3i::Point(3,1,0)) << endl;
    nbok += (tiledImage(Z3i::Point(3,1,0)) == 14) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.info() << "Read value for Point 9,5,2: " << tiledImage(Z3i::Point(9,5,2)) << endl;
    nbok += (tiledImage(Z3i::Point(9,5,2)) == 220) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    aValue = 1.1; tiledImage.setValue(Z3i::Point(3,6,5), aValue);
    trace.info() << "Write value for Point 3,6,5: " << aValue << endl;
    nbok += (tiledImage(Z3i::Point(3,6,5)) == 1.1) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.info() << "Read value for Point 1,2,4: " << tiledImage(Z3i::Point(1,2,4)) << endl;
    nbok += (tiledImage(Z3i::Point(1,2,4)) == 342) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.info() << "Read value for Point 8,6,3: " << tiledImage(Z3i::Point(8,6,3)) << endl;
    nbok += (tiledImage(Z3i::Point(8,6,3)) == 309) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    aValue = 125.5; tiledImage.setValue(Z3i::Point(8,6,3), aValue);
    trace.info() << "Write value for Point 8,6,3: " << aValue << endl;
    nbok += (tiledImage(Z3i::Point(8,6,3)) == 125.5) ? 1 : 0;
    nb++;
 
    trace.info() << "(" << nbok << "/" << nb << ") " << endl;
 
    trace.endBlock();
 
    return nbok == nb;
}

References DGtal::Trace::beginBlock(), DATASETNAME_3D_TILED, DGtal::Trace::endBlock(), H5FILE_NAME_3D_TILED, DGtal::Trace::info(), and DGtal::trace.

Referenced by main().

writeHDF5_2D()

bool writeHDF5_2D

(

)

Definition at line 56 of file testImageFactoryFromHDF5.cpp.

{
    hid_t               file, dataset;          // file and dataset handles
    hid_t               datatype, dataspace;    // handles
    hsize_t             dimsf[RANK_2D];         // dataset dimensions
    herr_t              status;
    DGtal::int32_t      data[NY_2D][NX_2D];     // data to write
    int         i, j;
 
    // Data  and output buffer initialization.
    for(j = 0; j < NY_2D; j++)
        for(i = 0; i < NX_2D; i++)
            data[j][i] = j + i;
    /*
     * 0 1 2 3 4 5
     * 1 2 3 4 5 6
     * 2 3 4 5 6 7
     * 3 4 5 6 7 8
     * 4 5 6 7 8 9
     */
 
    /*
     * Create a new file using H5F_ACC_TRUNC access,
     * default file creation properties, and default file
     * access properties.
     */
    file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
 
    // Describe the size of the array and create the data space for fixed size dataset.
    dimsf[0] = NY_2D;
    dimsf[1] = NX_2D;
    dataspace = H5Screate_simple(RANK_2D, dimsf, NULL);
 
    /*
     * Define datatype for the data in the file.
     */
    datatype = H5Tcopy(H5T_NATIVE_INT32);
    status = H5Tset_order(datatype, H5T_ORDER_LE);
 
    /*
     * Create a new dataset within the file using defined dataspace and
     * datatype and default dataset creation properties.
     */
    dataset = H5Dcreate2(file, DATASETNAME_2D, datatype, dataspace,
                        H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
 
    // Write the data to the dataset using default transfer properties.
    status = H5Dwrite(dataset, H5T_NATIVE_INT32, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
    if (status)
    {
      trace.error() << " H5Dwrite error" << std::endl;
      return false;
    }
 
    // Close/release resources.
    H5Sclose(dataspace);
    H5Tclose(datatype);
    H5Dclose(dataset);
    H5Fclose(file);
 
    return true;
}

References DATASETNAME_2D, DGtal::Trace::error(), H5FILE_NAME, NX_2D, NY_2D, RANK_2D, and DGtal::trace.

Referenced by main().

writeHDF5_2D_TILED()

bool writeHDF5_2D_TILED

(

const std::string &

_H5FILE_NAME_2D_TILED

)

Definition at line 124 of file testImageFactoryFromHDF5.cpp.

{
    hid_t               file, dataset;                          // file and dataset handles
    hid_t               datatype, dataspace;                    // handles
    hsize_t             dimsf[RANK_2D_TILED];                   // dataset dimensions
    herr_t              status;
    DGtal::int64_t      data[_NY_2D_TILED][_NX_2D_TILED];       // data to write
    int         i, j;
 
    int ii=1;
    // Data  and output buffer initialization.
    for(j = 0; j < _NY_2D_TILED; j++)
        for(i = 0; i < _NX_2D_TILED; i++)
            data[j][i] = ii++;
 
    /*
     * Create a new file using H5F_ACC_TRUNC access,
     * default file creation properties, and default file
     * access properties.
     */
    file = H5Fcreate(_H5FILE_NAME_2D_TILED.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
 
    // Describe the size of the array and create the data space for fixed size dataset.
    dimsf[0] = _NY_2D_TILED;
    dimsf[1] = _NX_2D_TILED;
    dataspace = H5Screate_simple(RANK_2D_TILED, dimsf, NULL);
 
    /*
     * Define datatype for the data in the file.
     */
    datatype = H5Tcopy(H5T_NATIVE_INT64);
    status = H5Tset_order(datatype, H5T_ORDER_LE);
 
    /*
     * Create a new dataset within the file using defined dataspace and
     * datatype and default dataset creation properties.
     */
    dataset = H5Dcreate2(file, DATASETNAME_2D_TILED, datatype, dataspace,
                        H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
 
    // Write the data to the dataset using default transfer properties.
    status = H5Dwrite(dataset, H5T_NATIVE_INT64, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
    if (status)
    {
      trace.error() << " H5Dwrite error" << std::endl;
      return false;
    }
 
    // Close/release resources.
    H5Sclose(dataspace);
    H5Tclose(datatype);
    H5Dclose(dataset);
    H5Fclose(file);
 
    return true;
}

References _NX_2D_TILED, _NY_2D_TILED, DATASETNAME_2D_TILED, DGtal::Trace::error(), RANK_2D_TILED, and DGtal::trace.

Referenced by main().

writeHDF5_3D_TILED()

bool writeHDF5_3D_TILED

(

)

Examples

images/exampleImageFactoryFromHDF5.cpp.

Definition at line 249 of file testImageFactoryFromHDF5.cpp.

{
    hid_t       file, dataset;                                  // file and dataset handles
    hid_t       datatype, dataspace;                            // handles
    hsize_t     dimsf[RANK_3D_TILED];                           // dataset dimensions
    herr_t      status;
    double      data[NZ_3D_TILED][NY_3D_TILED][NX_3D_TILED];    // data to write
    int         i, j, k;
 
    int ii=1;
    // Data  and output buffer initialization.
    for(k = 0; k < NZ_3D_TILED; k++)
      for(j = 0; j < NY_3D_TILED; j++)
        for(i = 0; i < NX_3D_TILED; i++)
          data[k][j][i] = ii++;
 
    /*
     * Create a new file using H5F_ACC_TRUNC access,
     * default file creation properties, and default file
     * access properties.
     */
    file = H5Fcreate(H5FILE_NAME_3D_TILED, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
 
    // Describe the size of the array and create the data space for fixed size dataset.
    dimsf[0] = NZ_3D_TILED;
    dimsf[1] = NY_3D_TILED;
    dimsf[2] = NX_3D_TILED;
    dataspace = H5Screate_simple(RANK_3D_TILED, dimsf, NULL);
 
    /*
     * Define datatype for the data in the file.
     */
    datatype = H5Tcopy(H5T_NATIVE_DOUBLE);
    status = H5Tset_order(datatype, H5T_ORDER_LE);
 
    /*
     * Create a new dataset within the file using defined dataspace and
     * datatype and default dataset creation properties.
     */
    dataset = H5Dcreate2(file, DATASETNAME_3D_TILED, datatype, dataspace,
                        H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
 
    // Write the data to the dataset using default transfer properties.
    status = H5Dwrite(dataset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
    if (status)
    {
      trace.error() << " H5Dwrite error" << std::endl;
      return false;
    }
 
    // Close/release resources.
    H5Sclose(dataspace);
    H5Tclose(datatype);
    H5Dclose(dataset);
    H5Fclose(file);
 
    return true;
}

References DATASETNAME_3D_TILED, DGtal::Trace::error(), H5FILE_NAME_3D_TILED, NX_3D_TILED, NY_3D_TILED, NZ_3D_TILED, RANK_3D_TILED, and DGtal::trace.

Referenced by main().

writeHDF5_3D_TILED_for_easy_reading()

bool writeHDF5_3D_TILED_for_easy_reading

(

)

Definition at line 190 of file testImageFactoryFromHDF5.cpp.

{
    hid_t       file, dataset;                                  // file and dataset handles
    hid_t       datatype, dataspace;                            // handles
    hsize_t     dimsf[RANK_3D_TILED];                           // dataset dimensions
    herr_t      status;
    double      data[NY_3D_TILED][NX_3D_TILED][NZ_3D_TILED];    // data to write
    int         i, j, k;
 
    int ii=1;
    // Data  and output buffer initialization.
    for(k = 0; k < NZ_3D_TILED; k++)
      for(j = 0; j < NY_3D_TILED; j++)
        for(i = 0; i < NX_3D_TILED; i++)
          data[j][i][k] = ii++;
 
    /*
     * Create a new file using H5F_ACC_TRUNC access,
     * default file creation properties, and default file
     * access properties.
     */
    file = H5Fcreate(H5FILE_NAME_3D_TILED_EASY_READING, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
 
    // Describe the size of the array and create the data space for fixed size dataset.
    dimsf[0] = NY_3D_TILED;
    dimsf[1] = NX_3D_TILED;
    dimsf[2] = NZ_3D_TILED;
    dataspace = H5Screate_simple(RANK_3D_TILED, dimsf, NULL);
 
    /*
     * Define datatype for the data in the file.
     */
    datatype = H5Tcopy(H5T_NATIVE_DOUBLE);
    status = H5Tset_order(datatype, H5T_ORDER_LE);
 
    /*
     * Create a new dataset within the file using defined dataspace and
     * datatype and default dataset creation properties.
     */
    dataset = H5Dcreate2(file, DATASETNAME_3D_TILED, datatype, dataspace,
                        H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
 
    // Write the data to the dataset using default transfer properties.
    status = H5Dwrite(dataset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
    if (status)
    {
      trace.error() << " H5Dwrite error" << std::endl;
      return false;
    }
 
    // Close/release resources.
    H5Sclose(dataspace);
    H5Tclose(datatype);
    H5Dclose(dataset);
    H5Fclose(file);
 
    return true;
}

References DATASETNAME_3D_TILED, DGtal::Trace::error(), H5FILE_NAME_3D_TILED_EASY_READING, NX_3D_TILED, NY_3D_TILED, NZ_3D_TILED, RANK_3D_TILED, and DGtal::trace.

Referenced by main().