 README | README for the FVCOM preprocessing toolbox |
| add_coriolis | Generate latitude used for FVCOM Coriolis file |
| add_obc_nodes_graphic | Add a set of obc nodes comprising a single obc boundary to Mesh structure |
| add_obc_nodes_list | Add a set of obc nodes comprising a single obc boundary to Mesh structure |
| add_river_nodes_graphic | Add a set of river nodes comprising a single river to Mesh structure |
| add_river_nodes_list | Add a set of river nodes comprising a single river to Mesh structure |
| add_sigma_forDT | ! this program adds sigma levels/layers and shifted layers to a netcdf file |
| add_sponge_nodes | Add a set of sponge nodes comprising a single sponge layer to Mesh structure |
| add_sponge_nodes_list | Add a set of sponge nodes comprising a single sponge layer to Mesh structure |
| add_stations_list | Add a set of stations at which FVCOM will output time series. |
| add_var_FVCOM_river | add time dependent scalar variable to a Riverfile |
| calc_sponge_radius | Calculate a variable sponge radius based on distance to the boundary |
| elems2nodes | Transfer a field from elements to vertices |
| estimate_ts | Estimate time step at each node |
| example | example demonstrating reading in a 2DM file and constructing a model |
| example2 | example demonstrating reading in an FVCOM mesh and smoothing the bathymetry |
| example_FVCOM_river | example file for dumping an FVCOM river file and adding sediment concentration |
| example_FVCOM_tsobc | example file for dumping a file to force temperature and salinity at the open b. |
| example_FVCOM_wind_ts | example file for FVCOM, time-varying/spatially constant wind forcing as stress |
| example_FVCOM_wind_ts_speed | example file for FVCOM, time-varying/spatially constant wind forcing as speed |
| example_my_project | function [out_east,out_north] = my_project(in_east,in_north,direction) |
| find_nearest_pt | Find nearest point in Mesh structure to (x,y) |
| gen_semistructured_mesh | Generate a semistructured mesh |
| gen_unstructured_mesh | function gen_unstructured_mesh(lx,ly,res,cornermod) |
| generate_mjd | -------------------------------------------------------------- |
| get_AMM | Extract boundary forcing information from NOC Operational Tide Surge |
| get_HYCOM_forcing | Get mean flow, temperature and salinity data from HYCOM model outputs |
| get_NAE2_forcing | Get the required parameters from NAE2 data to force FVCOM (through |
| get_NCEP_forcing | Get the required parameters from NCEP OPeNDAP data to force FVCOM |
| get_POLCOMS_tsobc | Read temperature and salinity from POLCOMS NetCDF model output files and |
| get_POLPRED_spectide | Extract tidal harmonic phases and amplitudes from POLPRED ASCII files. |
| get_zeta_xtide | Extract an elevation time series from a location using Xtide |
| grid2fvcom | Interpolate regularly gridded surface forcing data onto a given FVCOM |
| inCell | Find cell in mesh Mobj containing point (xpt,ypt) |
| make_blank_mesh | Make a blank mesh object with default params |
| my_project | Sample user-defined projection and inverse projection of (lon,lat) to (x,y) |
| nodes2elems | Transfer a field from vertices to elements |
| plot_field | Plot the mesh, user defined field, open boundary nodes, and river points |
| read_ERA_wind | Reads in ERA Interim files and outputs a struct containing the requested |
| read_NCEP_wind | Reads in two NCEP wind vector files (U and V) and outputs four arrays of |
| read_fvcom_bath | Read fvcom bathymetry file |
| read_fvcom_mesh | Read fvcom mesh file into Matlab mesh object |
| read_sigma | Read an FVCOM sigma layers file and output z values into Mobj. |
| read_sms_mesh | Read sms mesh files into Matlab mesh object |
| replace_FVCOM_restart_vars | Use an FVCOM restart file to seed a model run with spatially varying |
| set_elevtide | Setup surface elevation tides on the open boundary and dump an |
| set_spectide | Setup spectral tides on the open boundary and dump a spectral file |
| setup_metrics | Setup metrics for mesh object Mesh |
| smoothfield | Smooth a vertex-based field using averages |
| smoothfield2 | Smooth a vertex-based field using minimum value of surrounding nodes |
| truncfield | Smooth a vertex-based field using averages |
| wrf2fvcom_U10V10 | function wrf2fvcom_U10V10(wrf_file,fvcom_grid_file,fvcom_forcing_file,infos) |
| write_FVCOM_bath | Write bathymetry to FVCOM format bathymetry file |
| write_FVCOM_bedflag | Dump spatially-variable flag (bedflag) to FVCOM forcing file |
| write_FVCOM_cor | Write coriolis to FVCOM format coriolis file |
| write_FVCOM_elevtide | Write an FVCOM surface elevation time series forcing file |
| write_FVCOM_forcing | Write data out to FVCOM NetCDF forcing file. |
| write_FVCOM_grid | Write grid and connectivity to FVCOM format grid file |
| write_FVCOM_obc | Write FVCOM format open boundary node list file |
| write_FVCOM_obs_TS | Dump observation profile of T/S to netcdf file to initialize |
| write_FVCOM_river | write FVCOM 3.x NetCDF river file |
| write_FVCOM_spectide | Write an FVCOM spectral tidal elevation forcing file |
| write_FVCOM_sponge | Write FVCOM format sponge layer file |
| write_FVCOM_stations | Add a set of stations at which FVCOM will output time series. |
| write_FVCOM_tsobc | example file for dumping a file to force temperature and salinity at the open b. |
| write_FVCOM_wind_ts_speed | Write out time-varying/spatially constant wind forcing as speed. |
| write_FVCOM_z0 | Dump spatially-variable or uniform bottom roughness (z0) to FVCOM forcing |
| write_dtank | Dump mesh to datatank file |
| write_river_info | Write information on the rivers |
Master index