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<li><a href="./">Practical guide on dissolved organic matter (DOM) optic</a></li>
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<li class="chapter" data-level="1" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i><b>1</b> Introduction and motivations</a></li>
<li class="chapter" data-level="2" data-path="measurements.html"><a href="measurements.html"><i class="fa fa-check"></i><b>2</b> Measurements</a><ul>
<li class="chapter" data-level="2.1" data-path="dom-measurements.html"><a href="dom-measurements.html"><i class="fa fa-check"></i><b>2.1</b> DOM measurements</a></li>
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<li class="chapter" data-level="3" data-path="absorbance.html"><a href="absorbance.html"><i class="fa fa-check"></i><b>3</b> Absorbance</a><ul>
<li class="chapter" data-level="3.1" data-path="what-is-cdom.html"><a href="what-is-cdom.html"><i class="fa fa-check"></i><b>3.1</b> What is CDOM?</a></li>
<li class="chapter" data-level="3.2" data-path="writing-and-notation.html"><a href="writing-and-notation.html"><i class="fa fa-check"></i><b>3.2</b> Writing and notation</a></li>
<li class="chapter" data-level="3.3" data-path="absorption-vs-absorbance.html"><a href="absorption-vs-absorbance.html"><i class="fa fa-check"></i><b>3.3</b> Absorption vs absorbance</a></li>
<li class="chapter" data-level="3.4" data-path="mathematical-formulation-of-absorption-spectra.html"><a href="mathematical-formulation-of-absorption-spectra.html"><i class="fa fa-check"></i><b>3.4</b> Mathematical formulation of absorption spectra</a></li>
<li class="chapter" data-level="3.5" data-path="sl.html"><a href="sl.html"><i class="fa fa-check"></i><b>3.5</b> Modeling CDOM absorption spectra in R</a><ul>
<li class="chapter" data-level="3.5.1" data-path="sl.html"><a href="sl.html#potential-drawbacks"><i class="fa fa-check"></i><b>3.5.1</b> Potential drawbacks</a></li>
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<li class="chapter" data-level="3.6" data-path="metrics.html"><a href="metrics.html"><i class="fa fa-check"></i><b>3.6</b> Metrics</a><ul>
<li class="chapter" data-level="3.6.1" data-path="metrics.html"><a href="metrics.html#slope-ratio"><i class="fa fa-check"></i><b>3.6.1</b> Slope ratio</a></li>
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<li class="chapter" data-level="4" data-path="fluorescence.html"><a href="fluorescence.html"><i class="fa fa-check"></i><b>4</b> Fluorescence</a><ul>
<li class="chapter" data-level="4.1" data-path="what-is-a-eem.html"><a href="what-is-a-eem.html"><i class="fa fa-check"></i><b>4.1</b> What is a EEM</a></li>
<li class="chapter" data-level="4.2" data-path="parafac.html"><a href="parafac.html"><i class="fa fa-check"></i><b>4.2</b> PARAFAC</a></li>
<li class="chapter" data-level="4.3" data-path="fluorescence-of-dom-theoretical-and-mathematical-background.html"><a href="fluorescence-of-dom-theoretical-and-mathematical-background.html"><i class="fa fa-check"></i><b>4.3</b> Fluorescence of DOM: theoretical and mathematical background</a><ul>
<li class="chapter" data-level="4.3.1" data-path="fluorescence-of-dom-theoretical-and-mathematical-background.html"><a href="fluorescence-of-dom-theoretical-and-mathematical-background.html#scattering-correction"><i class="fa fa-check"></i><b>4.3.1</b> Scattering correction</a></li>
<li class="chapter" data-level="4.3.2" data-path="fluorescence-of-dom-theoretical-and-mathematical-background.html"><a href="fluorescence-of-dom-theoretical-and-mathematical-background.html#inner-filter-effect-correction"><i class="fa fa-check"></i><b>4.3.2</b> Inner-filter effect correction</a></li>
<li class="chapter" data-level="4.3.3" data-path="fluorescence-of-dom-theoretical-and-mathematical-background.html"><a href="fluorescence-of-dom-theoretical-and-mathematical-background.html#raman-calibration"><i class="fa fa-check"></i><b>4.3.3</b> Raman calibration</a></li>
<li class="chapter" data-level="4.3.4" data-path="fluorescence-of-dom-theoretical-and-mathematical-background.html"><a href="fluorescence-of-dom-theoretical-and-mathematical-background.html#metrics-1"><i class="fa fa-check"></i><b>4.3.4</b> Metrics</a></li>
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<li class="chapter" data-level="4.4" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html"><i class="fa fa-check"></i><b>4.4</b> R code and study case</a><ul>
<li class="chapter" data-level="4.4.1" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html#data-importation-and-plotting"><i class="fa fa-check"></i><b>4.4.1</b> Data importation and plotting</a></li>
<li class="chapter" data-level="4.4.2" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html#blank-subtraction"><i class="fa fa-check"></i><b>4.4.2</b> Blank subtraction</a></li>
<li class="chapter" data-level="4.4.3" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html#raman-and-rayleigh-scattering-removal"><i class="fa fa-check"></i><b>4.4.3</b> Raman and Rayleigh scattering removal</a></li>
<li class="chapter" data-level="4.4.4" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html#inner-filter-effect-correction-1"><i class="fa fa-check"></i><b>4.4.4</b> Inner-filter effect correction</a></li>
<li class="chapter" data-level="4.4.5" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html#raman-normalization"><i class="fa fa-check"></i><b>4.4.5</b> Raman normalization</a></li>
<li class="chapter" data-level="4.4.6" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html#exporting-to-matlab"><i class="fa fa-check"></i><b>4.4.6</b> Exporting to MATLAB</a></li>
<li class="chapter" data-level="4.4.7" data-path="r-code-and-study-case.html"><a href="r-code-and-study-case.html#metric-extraction"><i class="fa fa-check"></i><b>4.4.7</b> Metric extraction</a></li>
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<li class="chapter" data-level="4.5" data-path="using-r-pipeline.html"><a href="using-r-pipeline.html"><i class="fa fa-check"></i><b>4.5</b> Using R pipeline</a></li>
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<li class="chapter" data-level="5" data-path="definitions.html"><a href="definitions.html"><i class="fa fa-check"></i><b>5</b> Definitions</a></li>
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<h2><span class="header-section-number">2.1</span> DOM measurements</h2>
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<li>How DOM is measured (different filter sizes, paper in L&O).</li>
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