ComplexHeatmap-package.RdMake complex heatmaps
This package aims to provide a simple and flexible way to arrange multiple heatmaps as well as flexible annotation graphics.
The package is implemented in an object-oriented way. The heatmap lists are abstracted into several classes.
Heatmap-class: a single heatmap containing heatmap body, row/column names, titles, dendrograms and annotations.
HeatmapList-class: a list of heatmaps and annotations.
HeatmapAnnotation-class: a list of row/column annotations.
There are also several internal classes:
SingleAnnotation-class: a single row annotation or column annotation.
ColorMapping-class: mapping from values to colors.
AnnotationFunction-class: construct an annotation function which allows subsetting.
Following two high-level functions take use of functionality of complex heatmaps:
oncoPrint: oncoPrint plot which visualize genomic alterations in a set of genes.
densityHeatmap: use heatmaps to visualize density distributions.
The complete reference of ComplexHeatmap package is available at http://jokergoo.github.io/ComplexHeatmap-reference/book.
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