Version 0.10 (2015-10-26)#
Changelog#
Add support for generalized M-way repeated measures ANOVA for fully balanced designs with
mne.stats.f_mway_rm()
by Denis EngemannAdd epochs browser to interactively view and manipulate epochs with
mne.viz.plot_epochs()
by Jaakko LeppakangasSpeed up TF-MxNE inverse solver with block coordinate descent by Daniel Strohmeier and Yousra Bekhti
Speed up zero-phase overlap-add (default) filtering by a factor of up to 2 using linearity by Ross Maddox and Eric Larson
Add support for scaling and adjusting the number of channels/time per view by Jaakko Leppakangas
Add support to toggle the show/hide state of all sections with a single keypress (‘t’) in
mne.Report
by Mainak JasAdd support for BEM model creation
mne.make_bem_model()
by Eric LarsonAdd support for BEM solution computation
mne.make_bem_solution()
by Eric LarsonAdd ICA plotters for raw and epoch components by Jaakko Leppakangas
Add new object
mne.decoding.TimeDecoding
for decoding sensors’ evoked response across time by Jean-Rémi KingAdd command
mne freeview_bem_surfaces
to quickly check BEM surfaces with Freeview by Alex Gramfort.Add support for splitting epochs into multiple files in
mne.Epochs.save()
by Mainak Jas and Alex GramfortAdd support for jointly resampling a raw object and event matrix to avoid issues with resampling status channels by Marijn van Vliet
Add new method
mne.preprocessing.Xdawn
for denoising and decoding of ERP/ERF by Alexandre BarachantAdd support for plotting patterns/filters in
mne.decoding.CSP
andmne.decoding.LinearModel
by Romain TrachelAdd new object
mne.decoding.LinearModel
for decoding M/EEG data and interpreting coefficients of linear models with patterns attribute by Romain Trachel and Alex GramfortAdd support to append new channels to an object from a list of other objects by Chris Holdgraf
Add interactive plotting of topomap from time-frequency representation by Jaakko Leppakangas
Add
plot_topo
method toEvoked
object by Jaakko LeppakangasAdd fetcher
mne.datasets.brainstorm
for datasets used by Brainstorm in their tutorials by Mainak JasAdd interactive plotting of single trials by right clicking on channel name in epochs browser by Jaakko Leppakangas
New logos and logo generation script by Daniel McCloy
Add ability to plot topomap with a “skirt” (channels outside of the head circle) by Marijn van Vliet
Add multiple options to ICA infomax and extended infomax algorithms (number of subgaussian components, computation of bias, iteration status printing), enabling equivalent computations to those performed by EEGLAB by Jair Montoya Martinez
Add
mne.Epochs.apply_baseline()
method toEpochs
objects by Teon BrooksAdd
preload
argument tomne.read_epochs()
to enable on-demand reads from disk by Eric LarsonBig rewrite of simulation module by Yousra Bekhti, Mark Wronkiewicz, Eric Larson and Alex Gramfort. Allows to simulate raw with artifacts (ECG, EOG) and evoked data, exploiting the forward solution. See
mne.simulation.simulate_raw()
,mne.simulation.simulate_evoked()
andmne.simulation.simulate_sparse_stc()
Add
mne.Epochs.load_data()
method tomne.Epochs
by Teon BrooksAdd support for drawing topomaps by selecting an area in
mne.Evoked.plot()
by Jaakko LeppakangasAdd support for finding peaks in evoked data in
mne.Evoked.plot_topomap()
by Jona Sassenhagen and Jaakko LeppakangasAdd source space morphing in
morph_source_spaces()
andSourceEstimate.to_original_src()
by Eric Larson and Denis EngemannAdapt
corrmap
function (Viola et al. 2009) to semi-automatically detect similar ICs across data sets by Jona Sassenhagen and Denis Engemann and Eric LarsonClarify docstring for
mne.preprocessing.ICA
by jeythekeyNew
mne flash_bem
command to compute BEM surfaces from Flash MRI images by Lorenzo Desantis, Alex Gramfort and Eric Larson. Seemne.bem.make_flash_bem()
.New gfp parameter in
mne.Evoked.plot()
method to display Global Field Power (GFP) by Eric Larson.Add
mne.Report.add_slider_to_section
methods tomne.Report
by Teon Brooks
BUG#
Fix
mne.io.add_reference_channels
not settinginfo[nchan]
correctly by Federico RaimondoFix
mne.stats.bonferroni_correction
reject mask output to use corrected p-values by Denis EngemannFix FFT filter artifacts when using short windows in overlap-add by Eric Larson
Fix picking channels from forward operator could return a channel ordering different from
info['chs']
by Chris BaileyFix dropping of events after downsampling stim channels by Marijn van Vliet
Fix scaling in
mne.viz.utils._setup_vmin_vmax
by Jaakko LeppakangasFix order of component selection in
mne.decoding.CSP
by Clemens Brunner
API#
Rename and deprecate
mne.viz.plot_topo
formne.viz.plot_evoked_topo
by Jaakko LeppakangasDeprecated
mne.decoding.transformer.ConcatenateChannels
and replaced bymne.decoding.EpochsVectorizer
by Romain TrachelDeprecated
lws
and renamedledoit_wolf
for thereg
argument inmne.decoding.CSP
by Romain TrachelRedesigned and rewrote
mne.Epochs.plot()
(no backwards compatibility) during the GSOC 2015 by Jaakko Leppakangas, Mainak Jas, Federico Raimondo and Denis EngemannDeprecated and renamed
mne.viz.plot_image_epochs
formne.plot.plot_epochs_image
by Teon Brookspicks
argument has been added tomne.time_frequency.tfr_morlet()
,mne.time_frequency.tfr_multitaper()
by Teon Brooksmne.io.Raw.preload_data
has been deprecated formne.io.Raw.load_data()
by Teon BrooksRawBrainVision
objects now always have event channel'STI 014'
, and recordings with no events will have this channel set to zero by Eric Larson