Genotype-environment effects — ge

This is a helper function that computes the genotype-environment effects, i.e., the residual effect of the additive model

Usage

ge_effects(.data, env, gen, resp, type = "ge", verbose = TRUE)

.data: The dataset containing the columns related to Environments, Genotypes, replication/block and response variable(s).
env: The name of the column that contains the levels of the environments. The analysis of variance is computed for each level of this factor.
gen: The name of the column that contains the levels of the genotypes.
resp: The response variable(s). To analyze multiple variables in a single procedure a vector of variables may be used. For example resp = c(var1, var2, var3).
type: The type of effect to compute. Defaults to "ge", i.e., genotype-environment. To compute genotype plus genotype-environment effects use type = "gge".
verbose: Logical argument. If verbose = FALSE the code will run silently.

A list where each element is the result for one variable that contains a two-way table with genotypes in rows and environments in columns.

# \donttest{
library(metan)
ge_eff <- ge_effects(data_ge, ENV, GEN, GY)
gge_eff <- ge_effects(data_ge, ENV, GEN, GY, type = "gge")
plot(ge_eff)

# }