ChemicalDrift - Transport and fate of organic compounds

from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.chemicaldrift import ChemicalDrift
from opendrift.readers.reader_constant import Reader as ConstantReader
from datetime import timedelta, datetime
import matplotlib.pyplot as plt
import numpy as np


o = ChemicalDrift(loglevel=0, seed=0)

# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')
mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40})
o.add_reader([reader_norkyst,mixed_layer])

o.set_config('drift:vertical_mixing', True)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
o.set_config('chemical:particle_diameter',30.e-6)  # m
o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m
o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s
o.set_config('chemical:transformations:volatilization', True)
o.set_config('chemical:transformations:degradation', True)
o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants')
o.set_config('seed:LMM_fraction',.9)
o.set_config('seed:particle_fraction',.1)
o.set_config('general:coastline_action', 'previous')

o.init_chemical_compound("Phenanthrene")

# Modify half-life times with unrealistic values for this demo
o.set_config('chemical:transformations:t12_W_tot', 6.) # hours
o.set_config('chemical:transformations:t12_S_tot', 12.) # hours

o.list_configspec()

14:43:55 DEBUG   opendrift.config:168: Adding 17 config items from __init__
14:43:55 DEBUG   opendrift.config:178:   Overwriting config item readers:max_number_of_fails
14:43:55 DEBUG   opendrift.config:168: Adding 13 config items from __init__
14:43:55 INFO    opendrift.models.basemodel:507: OpenDriftSimulation initialised (version 1.11.5 / v1.11.5-4-g5577ceb)
14:43:55 DEBUG   opendrift.config:168: Adding 15 config items from oceandrift
14:43:55 DEBUG   opendrift.config:178:   Overwriting config item seed:z
14:43:55 DEBUG   opendrift.config:168: Adding 71 config items from chemicaldrift
14:43:55 INFO    opendrift.readers.reader_netCDF_CF_generic:102: Opening dataset: https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:44:02 DEBUG   opendrift.readers.reader_netCDF_CF_generic:119: Finding coordinate variables.
14:44:02 DEBUG   opendrift.readers.reader_netCDF_CF_generic:134: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': 70.0, 'latitude_of_projection_origin': 90.0, 'standard_parallel': 60.0, 'false_easting': 3192800.0, 'false_northing': 1784000.0, 'semi_major_axis': 6378137.0, 'semi_minor_axis': 6356752.3142, 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'}
14:44:03 INFO    opendrift.readers.reader_netCDF_CF_generic:314: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
14:44:03 DEBUG   opendrift.readers.reader_netCDF_CF_generic:340: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar']
14:44:03 DEBUG   opendrift.readers.basereader.variables:608: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00
14:44:03 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
14:44:03 DEBUG   opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed
14:44:03 DEBUG   opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
14:44:03 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
14:44:03 DEBUG   opendrift.models.basemodel.environment:328: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
14:44:03 DEBUG   opendrift.models.basemodel.environment:328: Added reader constant_reader
environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c...
environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s...
environment:constant:x_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:x_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:y_wind         [None] float min: -50, max: 50 [m/s] Component of wind al...
environment:fallback:y_wind         [0] float min: -50, max: 50 [m/s] Component of wind al...
environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea...
environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor...
environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor...
environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f...
environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o...
environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s...
environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s...
environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f...
environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u...
environment:constant:spm            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:spm            [1] float min: None, max: None [None] Fallback value for s...
environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o...
environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f...
environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a...
environment:constant:doc            [None] float min: None, max: None [None] Use constant value f...
environment:fallback:doc            [0.0] float min: None, max: None [None] Fallback value for d...
environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f...
environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s...
environment:constant:pH_sediment    [None] float min: None, max: None [None] Use constant value f...
environment:fallback:pH_sediment    [6.9] float min: None, max: None [None] Fallback value for p...
general:use_auto_landmask           [True] bool   A built-in GSHHG glo...
drift:current_uncertainty           [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:current_uncertainty_uniform   [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:max_speed                     [2.0] float min: 0, max: inf [seconds] Typical maximum spee...
readers:max_number_of_fails         [1] int   min: 0, max: 1000000.0 [number] Readers are discarde...
general:simulation_name             [] str   min length 0, max length 64 Name of simulation...
general:coastline_action            [previous] enum  ['none', 'stranding', 'previous'] None means that obje...
general:time_step_minutes           [60] float min: 0.01, max: 1440 [minutes] Calculation time ste...
general:time_step_output_minutes    [None] float min: 1, max: 1440 [minutes] Output time step, i....
seed:ocean_only                     [True] bool   If True, elements se...
seed:number                         [1] int   min: 1, max: 100000000 [1] The number of elemen...
drift:max_age_seconds               [None] float min: 0, max: inf [seconds] Elements will be dea...
drift:advection_scheme              [euler] enum  ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ...
drift:horizontal_diffusivity        [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu...
drift:profiles_depth                [50] float min: 0, max: None [meters] Environment profiles...
drift:wind_uncertainty              [0] float min: 0, max: 5 [m/s] Add gaussian perturb...
drift:relative_wind                 [False] bool   If True, wind drift ...
drift:deactivate_north_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_south_of           [None] float min: -90, max: 90 [degrees] Elements are deactiv...
drift:deactivate_east_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
drift:deactivate_west_of            [None] float min: -360, max: 360 [degrees] Elements are deactiv...
seed:origin_marker                  [0] float min: None, max: None [None] An integer kept cons...
seed:z                              [0] float min: -10000, max: 0 [m] Depth below sea leve...
seed:wind_drift_factor              [0.02] float min: None, max: None [1] Elements at surface ...
seed:current_drift_factor           [1] float min: None, max: None [1] Elements are moved w...
seed:terminal_velocity              [0.0] float min: None, max: None [m/s] Terminal rise/sinkin...
seed:diameter                       [0.0] float min: None, max: None [m] Seeding value of dia...
seed:density                        [2650.0] float min: None, max: None [kg/m^3] Seeding value of den...
seed:specie                         [0] float min: None, max: None [] Seeding value of spe...
seed:mass                           [1000.0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded                  [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_water            [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_degraded_sediment         [0] float min: None, max: None [ug] Seeding value of mas...
seed:mass_volatilized               [0] float min: None, max: None [ug] Seeding value of mas...
drift:vertical_advection            [True] bool   Advect elements with...
drift:vertical_mixing               [True] bool   Activate vertical mi...
vertical_mixing:timestep            [60] float min: 0.1, max: 3600 [seconds] Time step used for i...
vertical_mixing:diffusivitymodel    [windspeed_Large1994] enum  ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use...
vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi...
vertical_mixing:TSprofiles          [False] bool   Update T and S profi...
drift:wind_drift_depth              [0.1] float min: 0, max: 10 [meters] The direct wind drif...
drift:stokes_drift                  [True] bool   Advection elements w...
drift:stokes_drift_profile          [Phillips] enum  ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula...
drift:use_tabularised_stokes_drift  [False] bool   If True, Stokes drif...
drift:tabularised_stokes_drift_fetch [25000] enum  ['5000', '25000', '50000'] The fetch length whe...
general:seafloor_action             [lift_to_seafloor] enum  ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen...
drift:truncate_ocean_model_below_m  [None] float min: 0, max: 10000 [m] Ocean model data are...
seed:seafloor                       [False] bool   Elements are seeded ...
chemical:transfer_setup             [organics] enum  ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ...
chemical:dynamic_partitioning       [True] bool   Toggle dynamic parti...
chemical:slowly_fraction            [False] bool   ...
chemical:irreversible_fraction      [False] bool   ...
chemical:dissolved_diameter         [0] float min: 0, max: 0.0001 [m] ...
chemical:particle_diameter          [3e-05] float min: 0, max: 0.0001 [m] ...
chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ...
chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ...
chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ...
seed:LMM_fraction                   [0.9] float min: 0, max: 1 [] ...
seed:particle_fraction              [0.1] float min: 0, max: 1 [] ...
chemical:species:LMM                [True] bool   Toggle LMM species...
chemical:species:LMMcation          [False] bool   ...
chemical:species:LMManion           [False] bool   ...
chemical:species:Colloid            [False] bool   ...
chemical:species:Humic_colloid      [False] bool   ...
chemical:species:Polymer            [False] bool   ...
chemical:species:Particle_reversible [True] bool   ...
chemical:species:Particle_slowly_reversible [False] bool   ...
chemical:species:Particle_irreversible [False] bool   ...
chemical:species:Sediment_reversible [True] bool   ...
chemical:species:Sediment_slowly_reversible [False] bool   ...
chemical:species:Sediment_irreversible [False] bool   ...
chemical:transformations:Kd         [2.0] float min: 0, max: 1000000000.0 [m3/kg] ...
chemical:transformations:S0         [0.0] float min: 0, max: 100 [PSU] parameter controllin...
chemical:transformations:Dc         [1.16e-05] float min: 0, max: 1000000.0 [] ...
chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ...
chemical:transformations:volatilization [True] bool   Chemical is evaporat...
chemical:transformations:degradation [True] bool   Chemical mass is deg...
chemical:transformations:degradation_mode [OverallRateConstants] enum  ['OverallRateConstants'] ...
chemical:transformations:dissociation [nondiss] enum  ['nondiss', 'acid', 'base', 'amphoter'] ...
chemical:transformations:LogKOW     [4.505] float min: -3, max: 10 [Log L/Kg] ...
chemical:transformations:TrefKOW    [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:Setchenow  [0.3026] float min: 0, max: 1 [L/mol] ...
chemical:transformations:pKa_acid   [-1] float min: -1, max: 14 [] ...
chemical:transformations:pKa_base   [-1] float min: -1, max: 14 [] ...
chemical:transformations:KOC_DOM    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:KOC_sed    [-1] float min: -1, max: 10000000000 [L/KgOC] ...
chemical:transformations:fOC_SPM    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:fOC_sed    [0.05] float min: 0.01, max: 0.1 [gOC/g] ...
chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ...
chemical:transformations:t12_W_tot  [6.0] float min: 1, max: None [hours] half life in water, ...
chemical:transformations:Tref_kWt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:t12_S_tot  [12.0] float min: 1, max: None [hours] half life in sedimen...
chemical:transformations:Tref_kSt   [25.0] float min: -3, max: 30 [C] ...
chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ...
chemical:transformations:MolWt      [178.226] float min: 50, max: 1000 [amu] molecular weight...
chemical:transformations:Henry      [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant...
chemical:transformations:Vpress     [0.0222] float min: None, max: None [Pa] Vapour pressure...
chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ...
chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili...
chemical:transformations:Solub      [1.09] float min: None, max: None [g/m3] Solubility...
chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp...
chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili...
chemical:sediment:mixing_depth      [0.03] float min: 0, max: 100 [m] ...
chemical:sediment:density           [2600] float min: 0, max: 10000 [kg/m3] ...
chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ...
chemical:sediment:corr_factor       [0.1] float min: 0, max: 10 [] ...
chemical:sediment:porosity          [0.6] float min: 0, max: 1 [] ...
chemical:sediment:layer_thickness   [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth  [1] float min: 0, max: 100 [m] ...
chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ...
chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ...
chemical:sediment:burial_rate       [3e-05] float min: 0, max: 10 [m/year] ...
chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ...
chemical:compound                   [Phenanthrene] enum  ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ...

Seeding 500 lagrangian elements each representign 2mg og target chemical

td=datetime.today()
time = td - timedelta(days=10)

latseed= 57.6;   lonseed= 10.6 # Skagen

ntraj=500
iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m

o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3)

44:03 DEBUG   opendrift.models.chemicaldrift:870: Partitioning coefficients (Tref,freshwater)
44:03 DEBUG   opendrift.models.chemicaldrift:871: KOC_sed: 12953.922406542462 L/KgOC
44:03 DEBUG   opendrift.models.chemicaldrift:872: KOC_SPM: 12953.922406542462 L/KgOC
44:03 DEBUG   opendrift.models.chemicaldrift:873: KOC_DOM: 3004.29439651874 L/KgOC
44:03 DEBUG   opendrift.models.chemicaldrift:885: Kd_sed: 647.6961203271231 L/Kg
44:03 DEBUG   opendrift.models.chemicaldrift:886: Kd_SPM: 647.6961203271231 L/Kg
44:03 DEBUG   opendrift.models.chemicaldrift:887: Kd_DOM: 1580.2588525688573 L/Kg
44:03 DEBUG   opendrift.models.chemicaldrift:1104: nspecies: 5
44:03 DEBUG   opendrift.models.chemicaldrift:1105: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
44:03 DEBUG   opendrift.models.chemicaldrift:509: Initial partitioning:
44:03 DEBUG   opendrift.models.chemicaldrift:511:       449   0 LMM
44:03 DEBUG   opendrift.models.chemicaldrift:511:         0   1 Humic colloid
44:03 DEBUG   opendrift.models.chemicaldrift:511:        51   2 Particle reversible
44:03 DEBUG   opendrift.models.chemicaldrift:511:         0   3 Sediment reversible
44:03 DEBUG   opendrift.models.chemicaldrift:511:         0   4 Sediment slowly reversible
44:03 INFO    opendrift.models.basemodel.environment:218: Adding a dynamical landmask with max. priority based on assumed maximum speed of 2.0 m/s. Adding a customised landmask may be faster...
44:03 DEBUG   opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
44:10 DEBUG   opendrift.models.basemodel.environment:328: Added reader global_landmask
44:10 INFO    opendrift.models.basemodel.environment:245: Fallback values will be used for the following variables which have no readers:
44:10 INFO    opendrift.models.basemodel.environment:248:    sea_surface_height: 0.000000
44:10 INFO    opendrift.models.basemodel.environment:248:    ocean_vertical_diffusivity: 0.000100
44:10 INFO    opendrift.models.basemodel.environment:248:    spm: 1.000000
44:10 INFO    opendrift.models.basemodel.environment:248:    active_sediment_layer_thickness: 0.030000
44:10 INFO    opendrift.models.basemodel.environment:248:    doc: 0.000000
44:10 INFO    opendrift.models.basemodel.environment:248:    sea_water_ph_reported_on_total_scale: 8.100000
44:10 INFO    opendrift.models.basemodel.environment:248:    pH_sediment: 6.900000
44:10 DEBUG   opendrift.models.basemodel:92: Changed mode from Mode.Config to Mode.Ready

Running model

o.run(steps=48*2, time_step=1800, time_step_output=1800)

44:10 DEBUG   opendrift.models.basemodel:92: Changed mode from Mode.Ready to Mode.Run
44:10 DEBUG   opendrift.models.basemodel:1725:
------------------------------------------------------
Software and hardware:
  OpenDrift version 1.11.5
  Platform: Linux, 5.15.0-1057-aws
5677375793457 GB memory
processors (x86_64)
  NumPy version 1.26.4
  SciPy version 1.13.1
  Matplotlib version 3.8.4
  NetCDF4 version 1.6.1
  Xarray version 2024.6.0
  Python version 3.11.6 | packaged by conda-forge | (main, Oct  3 2023, 10:40:35) [GCC 12.3.0]
------------------------------------------------------

44:10 DEBUG   opendrift.models.basemodel:1739: No output file is specified, neglecting export_buffer_length
44:10 DEBUG   opendrift.models.basemodel:1857: Finalizing environment and preparing readers for simulation coverage ([4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]) and time (2024-06-10 14:44:03.285310 to 2024-06-12 14:44:03.285310)
44:10 DEBUG   opendrift.models.basemodel.environment:180:    Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
44:10 DEBUG   opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation
44:10 DEBUG   opendrift.readers.basereader.variables:608: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00
44:10 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:10 DEBUG   opendrift.models.basemodel.environment:180:    Preparing constant_reader for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
44:10 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for constant_reader
44:10 DEBUG   opendrift.models.basemodel.environment:180:    Preparing global_landmask for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]
44:10 DEBUG   opendrift.readers.basereader.variables:549: Nothing more to prepare for global_landmask
44:10 INFO    opendrift.models.basemodel:885: Using existing reader for land_binary_mask
44:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:10 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:10 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:10 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:10 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:10 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:10 INFO    opendrift.models.basemodel:896: All points are in ocean
44:10 INFO    opendrift.models.chemicaldrift:352: Number of species: 5
44:10 INFO    opendrift.models.chemicaldrift:354:   0 LMM
44:10 INFO    opendrift.models.chemicaldrift:354:   1 Humic colloid
44:10 INFO    opendrift.models.chemicaldrift:354:   2 Particle reversible
44:10 INFO    opendrift.models.chemicaldrift:354:   3 Sediment reversible
44:10 INFO    opendrift.models.chemicaldrift:354:   4 Sediment slowly reversible
44:10 INFO    opendrift.models.chemicaldrift:357: transfer setup: organics
44:10 INFO    opendrift.models.chemicaldrift:359: nspecies: 5
44:10 INFO    opendrift.models.chemicaldrift:360: Transfer rates:
 [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02
00000000e+00]
 [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]
 [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00
16887646e-11]
 [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00
00000000e+00]]
44:10 DEBUG   opendrift.models.basemodel:840: to be seeded: 500, already seeded 0
44:10 DEBUG   opendrift.models.basemodel:858: Released 500 new elements.
44:10 WARNING opendrift.models.basemodel:679: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem.
44:10 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:10 INFO    opendrift.models.basemodel:1985: 2024-06-10 14:44:03.285310 - step 1 of 96 - 500 active elements (0 deactivated)
44:10 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:10 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:10 DEBUG   opendrift.models.basemodel:2004:               57.546223 <- latitude  -> 57.64813
44:10 DEBUG   opendrift.models.basemodel:2009:               10.507113 <- longitude -> 10.70608
44:10 DEBUG   opendrift.models.basemodel:2014:               -9.98847   <- z ->   -0.046954762
44:10 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 14:00:00 (before)
                2024-06-10 15:00:00 (after)
44:12 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:12 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:12 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:12 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:12 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:12 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:12 DEBUG   opendrift.readers.basereader.structured:291: Fetched env-block (size 36x35x7) for time before (2024-06-10 14:00:00)
44:13 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:13 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:13 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:13 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:13 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:13 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:13 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 36x35x7) for time after (2024-06-10 15:00:00)
44:13 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 14:00:00) in space  (linearNDFast)
44:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:13 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 15:00:00) in space  (linearNDFast)
44:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:13 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 14:00:00, weight 0.27) and
                      after (2024-06-10 15:00:00, weight 0.73) in time
44:13 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
44:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees.
44:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:13 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:13 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:13 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:13 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0794177 (min) 0.140856 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.00326042 (min) 0.205605 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.5142 (min) 5.72924 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.0640456 (min) 2.36969 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5526 (min) 13.9612 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.0964 (min) 31.9877 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -6.6441e-05 (min) 8.8219e-05 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:13 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:13 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:13 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:13 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:13 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:13 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide
  ret = ret.dtype.type(ret / rcount)
44:13 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:13 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
44:13 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
44:13 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
44:13 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [1. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]
 [0. 0. 0. 0. 0.]]
44:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:13 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:13 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:13 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.026446840822511024
44:13 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:13 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:13 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:13 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:13 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:13 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:13 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:13 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:13 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:13 INFO    opendrift.models.chemicaldrift:1861: partitioning: [450, 0, 50, 0, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:13 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:13 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:13 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:13 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:13 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:13 INFO    opendrift.models.basemodel:1985: 2024-06-10 15:14:03.285310 - step 2 of 96 - 500 active elements (0 deactivated)
44:13 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:13 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:13 DEBUG   opendrift.models.basemodel:2004:               57.549257941867744 <- latitude  -> 57.64996103001867
44:13 DEBUG   opendrift.models.basemodel:2009:               10.508144234600183 <- longitude -> 10.707605826885167
44:13 DEBUG   opendrift.models.basemodel:2014:               -20.46859800262907   <- z ->   0.0
44:13 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:13 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 15:00:00 (before)
                2024-06-10 16:00:00 (after)
44:14 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:14 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:14 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:14 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:14 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:14 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:14 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 36x35x7) for time after (2024-06-10 16:00:00)
44:14 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 15:00:00) in space  (linearNDFast)
44:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:14 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 16:00:00) in space  (linearNDFast)
44:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:14 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 15:00:00, weight 0.77) and
                      after (2024-06-10 16:00:00, weight 0.23) in time
44:14 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.491866849885454 and -59.29240522775001 degrees.
44:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.491866849885454 and -59.29240522775001 degrees.
44:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:14 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:14 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:14 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:14 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0938699 (min) 0.12491 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0382986 (min) 0.189967 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.16863 (min) 5.3819 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.212373 (min) 2.25078 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.53543 (min) 23.9432 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.572 (min) 13.9804 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1006 (min) 32.2907 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -5.75161e-05 (min) 0.000114865 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:14 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:14 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:14 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 24
44:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
44:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
44:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 24.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 1.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
44:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:14 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:14 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02282703080091969
44:14 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:14 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:14 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:14 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:14 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:14 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
44:14 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
44:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:14 INFO    opendrift.models.chemicaldrift:1861: partitioning: [426, 0, 55, 19, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:14 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:14 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:14 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:14 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:14 INFO    opendrift.models.basemodel:1985: 2024-06-10 15:44:03.285310 - step 3 of 96 - 500 active elements (0 deactivated)
44:14 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:14 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:14 DEBUG   opendrift.models.basemodel:2004:               57.551368775421764 <- latitude  -> 57.651524843253895
44:14 DEBUG   opendrift.models.basemodel:2009:               10.509524977671614 <- longitude -> 10.709938258678639
44:14 DEBUG   opendrift.models.basemodel:2014:               -20.44607162475586   <- z ->   0.0
44:14 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 15:00:00 (before)
                2024-06-10 16:00:00 (after)
44:14 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 15:00:00) in space  (linearNDFast)
44:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:14 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 16:00:00) in space  (linearNDFast)
44:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:14 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 15:00:00, weight 0.27) and
                      after (2024-06-10 16:00:00, weight 0.73) in time
44:14 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.490486106803424 and -59.29007280727776 degrees.
44:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.490486106803424 and -59.29007280727776 degrees.
44:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:14 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:14 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:14 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:14 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:14 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0927441 (min) 0.119461 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0718098 (min) 0.177368 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.70904 (min) 4.9228 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.68909 (min) 2.44451 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.56756 (min) 24.0648 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.546 (min) 14.0165 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1058 (min) 32.2873 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -6.76629e-05 (min) 0.00012029 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:14 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:14 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:14 DEBUG   opendrift.models.basemodel:704: Lifting 12 elements to seafloor.
44:14 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:14 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 22
44:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
44:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
44:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 46.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 1.  0.  0.  1.  0.]
 [ 0.  0.  6.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
44:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:14 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:14 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02031817990275293
44:14 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:14 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:14 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:14 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:14 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:15 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:15 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:15 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
44:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
44:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [404, 0, 58, 38, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:15 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:15 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:15 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:15 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:15 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:15 INFO    opendrift.models.basemodel:1985: 2024-06-10 16:14:03.285310 - step 4 of 96 - 500 active elements (0 deactivated)
44:15 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:15 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:15 DEBUG   opendrift.models.basemodel:2004:               57.553404311431024 <- latitude  -> 57.653235553866615
44:15 DEBUG   opendrift.models.basemodel:2009:               10.510652099824913 <- longitude -> 10.712170316435532
44:15 DEBUG   opendrift.models.basemodel:2014:               -22.67529813602519   <- z ->   -0.028229698599854858
44:15 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 16:00:00 (before)
                2024-06-10 17:00:00 (after)
44:16 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:16 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:16 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:16 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:16 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:16 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:16 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x35x7) for time after (2024-06-10 17:00:00)
44:16 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 16:00:00) in space  (linearNDFast)
44:16 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:16 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 17:00:00) in space  (linearNDFast)
44:16 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:16 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 16:00:00, weight 0.77) and
                      after (2024-06-10 17:00:00, weight 0.23) in time
44:16 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:16 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4893589963926 and -59.287840738062606 degrees.
44:16 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.4893589963926 and -59.287840738062606 degrees.
44:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:16 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:16 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:16 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:16 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:16 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:16 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:16 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:16 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:16 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:16 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0865583 (min) 0.110283 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0975414 (min) 0.16491 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.25565 (min) 4.42659 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.25828 (min) 2.53335 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.58701 (min) 24.2116 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.567 (min) 14.0507 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1097 (min) 32.2833 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -7.33065e-05 (min) 0.000137679 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:16 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:16 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:16 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:16 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:16 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:16 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 28
44:16 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0]
44:16 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3 3 3 3 3]
44:16 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[ 0.  0.  0. 73.  0.]
 [ 0.  0.  0.  0.  0.]
 [ 1.  0.  0.  4.  0.]
 [ 1.  0. 12.  0.  0.]
 [ 0.  0.  0.  0.  0.]]
44:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:16 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:16 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:16 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.017296048120770572
44:16 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:16 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:16 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:16 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
44:16 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
44:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:16 INFO    opendrift.models.chemicaldrift:1861: partitioning: [378, 0, 61, 61, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:16 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:16 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:16 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:16 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:16 INFO    opendrift.models.basemodel:1985: 2024-06-10 16:44:03.285310 - step 5 of 96 - 500 active elements (0 deactivated)
44:16 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:16 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:16 DEBUG   opendrift.models.basemodel:2004:               57.55606964279192 <- latitude  -> 57.655342926287645
44:16 DEBUG   opendrift.models.basemodel:2009:               10.51182537998102 <- longitude -> 10.714348110086695
44:16 DEBUG   opendrift.models.basemodel:2014:               -23.391769473390656   <- z ->   -0.02803239832839577
44:16 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:16 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 16:00:00 (before)
                2024-06-10 17:00:00 (after)
44:16 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 16:00:00) in space  (linearNDFast)
44:16 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:16 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 17:00:00) in space  (linearNDFast)
44:16 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:16 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 16:00:00, weight 0.27) and
                      after (2024-06-10 17:00:00, weight 0.73) in time
44:16 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:16 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48818570475288 and -59.285662958511196 degrees.
44:16 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48818570475288 and -59.285662958511196 degrees.
44:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:16 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:16 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:16 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:16 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:16 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:16 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:16 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:16 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:16 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:16 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:16 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:16 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0853943 (min) 0.107153 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.114244 (min) 0.166269 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.86607 (min) 3.84816 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.85682 (min) 2.55194 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.61623 (min) 24.3804 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5885 (min) 14.0667 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1155 (min) 32.2802 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -7.77817e-05 (min) 0.000139861 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:16 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:16 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:16 DEBUG   opendrift.models.basemodel:704: Lifting 8 elements to seafloor.
44:16 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:16 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:16 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:16 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:16 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 29
44:16 DEBUG   opendrift.models.chemicaldrift:1452: old species: [3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
44:16 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
44:16 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 100.   0.]
 [  0.   0.   0.   0.   0.]
 [  1.   0.   0.   5.   0.]
 [  3.   0.  16.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:16 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:16 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:16 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014073238063997594
44:16 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:16 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:16 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:16 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:16 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:16 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:16 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
44:16 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:16 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
44:16 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:16 INFO    opendrift.models.chemicaldrift:1861: partitioning: [353, 0, 60, 87, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:16 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:16 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:16 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:16 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:16 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:16 INFO    opendrift.models.basemodel:1985: 2024-06-10 17:14:03.285310 - step 6 of 96 - 500 active elements (0 deactivated)
44:16 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:16 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:16 DEBUG   opendrift.models.basemodel:2004:               57.55780836719674 <- latitude  -> 57.65735944020567
44:16 DEBUG   opendrift.models.basemodel:2009:               10.513176325743961 <- longitude -> 10.715872220534454
44:16 DEBUG   opendrift.models.basemodel:2014:               -22.558650330334544   <- z ->   -0.04841937602757444
44:16 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:16 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:16 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:16 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:16 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:16 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 17:00:00 (before)
                2024-06-10 18:00:00 (after)
44:17 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:17 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:17 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x36x7) for time after (2024-06-10 18:00:00)
44:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 17:00:00) in space  (linearNDFast)
44:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 18:00:00) in space  (linearNDFast)
44:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 17:00:00, weight 0.77) and
                      after (2024-06-10 18:00:00, weight 0.23) in time
44:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48683475688875 and -59.28413884711537 degrees.
44:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48683475688875 and -59.28413884711537 degrees.
44:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0858902 (min) 0.104582 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0899164 (min) 0.153496 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.23585 (min) 3.29049 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.97734 (min) 2.49109 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.65973 (min) 24.5386 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5973 (min) 14.0816 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1427 (min) 32.279 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.47979e-05 (min) 0.000138658 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:17 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:17 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:17 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
44:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0]
44:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3]
44:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 110.   0.]
 [  0.   0.   0.   0.   0.]
 [  1.   0.   0.   7.   0.]
 [  3.   0.  17.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011175771155360652
44:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
44:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
44:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [343, 0, 59, 98, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:17 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:17 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:17 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:17 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:17 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:17 INFO    opendrift.models.basemodel:1985: 2024-06-10 17:44:03.285310 - step 7 of 96 - 500 active elements (0 deactivated)
44:17 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:17 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:17 DEBUG   opendrift.models.basemodel:2004:               57.55780836719674 <- latitude  -> 57.657359440205674
44:17 DEBUG   opendrift.models.basemodel:2009:               10.514741330430036 <- longitude -> 10.71572926186897
44:17 DEBUG   opendrift.models.basemodel:2014:               -22.654861450195312   <- z ->   -0.06600578790313716
44:17 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 17:00:00 (before)
                2024-06-10 18:00:00 (after)
44:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 17:00:00) in space  (linearNDFast)
44:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 18:00:00) in space  (linearNDFast)
44:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 17:00:00, weight 0.27) and
                      after (2024-06-10 18:00:00, weight 0.73) in time
44:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48526973997499 and -59.284281796027514 degrees.
44:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48526973997499 and -59.284281796027514 degrees.
44:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0862149 (min) 0.101005 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.128957 (min) 0.157629 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.55555 (min) 2.73684 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.88102 (min) 2.18983 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.71694 (min) 24.6085 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6129 (min) 14.1155 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1459 (min) 32.2813 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.4177e-05 (min) 0.000133613 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:17 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:17 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
44:17 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:17 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 21
44:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
44:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
44:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 131.   0.]
 [  0.   0.   0.   0.   0.]
 [  1.   0.   0.   9.   0.]
 [  3.   0.  18.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.008800637224001245
44:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:18 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:18 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:18 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:18 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:18 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:18 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
44:18 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:18 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
44:18 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:18 INFO    opendrift.models.chemicaldrift:1861: partitioning: [322, 0, 62, 116, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:18 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:18 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:18 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:18 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:18 INFO    opendrift.models.basemodel:1985: 2024-06-10 18:14:03.285310 - step 8 of 96 - 500 active elements (0 deactivated)
44:18 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:18 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:18 DEBUG   opendrift.models.basemodel:2004:               57.55780836719674 <- latitude  -> 57.659532695386815
44:18 DEBUG   opendrift.models.basemodel:2009:               10.516029766243738 <- longitude -> 10.717118010034293
44:18 DEBUG   opendrift.models.basemodel:2014:               -22.691028594970703   <- z ->   -0.06358982556091615
44:18 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:18 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:18 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:18 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:18 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:18 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:18 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:18 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:18 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 18:00:00 (before)
                2024-06-10 19:00:00 (after)
44:19 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:19 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:19 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:19 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:19 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 37x36x7) for time after (2024-06-10 19:00:00)
44:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 18:00:00) in space  (linearNDFast)
44:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 19:00:00) in space  (linearNDFast)
44:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 18:00:00, weight 0.77) and
                      after (2024-06-10 19:00:00, weight 0.23) in time
44:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.483981319008585 and -59.28289305625479 degrees.
44:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.483981319008585 and -59.28289305625479 degrees.
44:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0863788 (min) 0.104951 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.122638 (min) 0.159901 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.06181 (min) 2.3737 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.05762 (min) 2.5022 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.75469 (min) 24.7588 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6081 (min) 14.1334 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1318 (min) 32.283 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.76131e-05 (min) 0.000126637 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:19 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:19 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:19 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:19 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
44:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 2 0 0 0 0 2]
44:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 3 3 3 3 0]
44:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 138.   0.]
 [  0.   0.   0.   0.   0.]
 [  4.   0.   0.  11.   0.]
 [  3.   0.  23.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.008373019365053165
44:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:19 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
44:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
44:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [318, 0, 63, 119, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:19 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:19 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:19 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:19 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:19 INFO    opendrift.models.basemodel:1985: 2024-06-10 18:44:03.285310 - step 9 of 96 - 500 active elements (0 deactivated)
44:19 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:19 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:19 DEBUG   opendrift.models.basemodel:2004:               57.55780836719674 <- latitude  -> 57.66192599427864
44:19 DEBUG   opendrift.models.basemodel:2009:               10.517611254466283 <- longitude -> 10.717709402027548
44:19 DEBUG   opendrift.models.basemodel:2014:               -22.691028594970703   <- z ->   -0.05127610547390471
44:19 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 18:00:00 (before)
                2024-06-10 19:00:00 (after)
44:19 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 18:00:00) in space  (linearNDFast)
44:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:19 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 19:00:00) in space  (linearNDFast)
44:19 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:19 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 18:00:00, weight 0.27) and
                      after (2024-06-10 19:00:00, weight 0.73) in time
44:19 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48239982425871 and -59.28230166052475 degrees.
44:19 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48239982425871 and -59.28230166052475 degrees.
44:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0863604 (min) 0.108256 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.098767 (min) 0.171483 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.80405 (min) 2.24413 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.64788 (min) 3.46936 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.80434 (min) 24.8784 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6212 (min) 14.1474 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1346 (min) 32.2841 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000106229 (min) 0.000117472 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:19 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:19 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:19 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
44:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 2 0 0 0 0]
44:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0 3 3 3 3]
44:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 148.   0.]
 [  0.   0.   0.   0.   0.]
 [  5.   0.   0.  12.   0.]
 [  3.   0.  28.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.010204557255212323
44:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:19 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:19 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:19 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:19 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 31
44:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 31 elements
44:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [309, 0, 91, 100, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:19 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:19 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:19 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:19 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:19 INFO    opendrift.models.basemodel:1985: 2024-06-10 19:14:03.285310 - step 10 of 96 - 500 active elements (0 deactivated)
44:19 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:19 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:19 DEBUG   opendrift.models.basemodel:2004:               57.557808367196735 <- latitude  -> 57.664605289091604
44:19 DEBUG   opendrift.models.basemodel:2009:               10.51857685213949 <- longitude -> 10.717598715262085
44:19 DEBUG   opendrift.models.basemodel:2014:               -22.691028594970703   <- z ->   -0.23049467048480168
44:19 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 19:00:00 (before)
                2024-06-10 20:00:00 (after)
44:21 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:21 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:21 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:21 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:21 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 38x36x7) for time after (2024-06-10 20:00:00)
44:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 19:00:00) in space  (linearNDFast)
44:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 20:00:00) in space  (linearNDFast)
44:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 19:00:00, weight 0.77) and
                      after (2024-06-10 20:00:00, weight 0.23) in time
44:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.481434237680574 and -59.28241234340053 degrees.
44:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.481434237680574 and -59.28241234340053 degrees.
44:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0833009 (min) 0.119915 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0502001 (min) 0.183208 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.975505 (min) 2.22667 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.89657 (min) 3.8937 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.85167 (min) 24.9551 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6088 (min) 14.1418 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.139 (min) 32.2843 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000114085 (min) 0.000107287 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:21 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:21 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:21 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:21 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 15
44:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 2 0 0 0 0 0 0]
44:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 0 3 3 3 3 3 3]
44:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 162.   0.]
 [  0.   0.   0.   0.   0.]
 [  6.   0.   0.  14.   0.]
 [  3.   0.  59.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012571677047664327
44:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 39
44:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 39 elements
44:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [296, 0, 120, 84, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:21 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:21 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:21 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:21 INFO    opendrift.models.basemodel:1985: 2024-06-10 19:44:03.285310 - step 11 of 96 - 500 active elements (0 deactivated)
44:21 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:21 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:21 DEBUG   opendrift.models.basemodel:2004:               57.557808367196735 <- latitude  -> 57.66755083257959
44:21 DEBUG   opendrift.models.basemodel:2009:               10.519517840656107 <- longitude -> 10.715694707866248
44:21 DEBUG   opendrift.models.basemodel:2014:               -22.691028594970703   <- z ->   -0.04328251957175
44:21 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 19:00:00 (before)
                2024-06-10 20:00:00 (after)
44:21 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 19:00:00) in space  (linearNDFast)
44:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:21 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 20:00:00) in space  (linearNDFast)
44:21 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:21 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 19:00:00, weight 0.27) and
                      after (2024-06-10 20:00:00, weight 0.73) in time
44:21 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48049325452365 and -59.28431635532337 degrees.
44:21 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48049325452365 and -59.28431635532337 degrees.
44:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:21 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:21 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:21 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:21 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:21 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:21 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:21 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:21 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:21 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.06733 (min) 0.13125 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0101963 (min) 0.200136 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.65055 (min) 2.48043 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.8105 (min) 3.68006 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.90159 (min) 24.8803 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6273 (min) 14.0926 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1645 (min) 32.2863 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000115771 (min) 9.33091e-05 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:21 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:21 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:21 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:21 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:21 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:21 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:21 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
44:21 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0 2 0 0 0 0 0 0 0 0]
44:21 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 0 3 3 3 3 3 3 3 3]
44:21 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 173.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  23.   0.]
 [  3.   0.  98.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:21 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:21 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:21 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012834030652694112
44:21 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:21 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:21 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:21 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:21 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:21 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 54
44:21 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:21 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 54 elements
44:21 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:21 INFO    opendrift.models.chemicaldrift:1861: partitioning: [288, 0, 165, 47, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:21 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:21 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:21 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:21 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:21 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:21 INFO    opendrift.models.basemodel:1985: 2024-06-10 20:14:03.285310 - step 12 of 96 - 500 active elements (0 deactivated)
44:21 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:21 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:21 DEBUG   opendrift.models.basemodel:2004:               57.55780836719673 <- latitude  -> 57.67073427612148
44:21 DEBUG   opendrift.models.basemodel:2009:               10.520444633761329 <- longitude -> 10.71609045557169
44:21 DEBUG   opendrift.models.basemodel:2014:               -22.691028594970703   <- z ->   -0.06126846518794171
44:21 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:21 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:21 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:21 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:21 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:21 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 20:00:00 (before)
                2024-06-10 21:00:00 (after)
44:22 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:22 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:22 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:22 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:22 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:22 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:22 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 39x36x7) for time after (2024-06-10 21:00:00)
44:22 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 20:00:00) in space  (linearNDFast)
44:22 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:22 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 21:00:00) in space  (linearNDFast)
44:22 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:22 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 20:00:00, weight 0.77) and
                      after (2024-06-10 21:00:00, weight 0.23) in time
44:22 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:22 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.479566443610096 and -59.28392061024961 degrees.
44:22 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.479566443610096 and -59.28392061024961 degrees.
44:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:22 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:22 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:22 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:22 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:22 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:22 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:22 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:22 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:22 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:22 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:22 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:22 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:22 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:22 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:22 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:22 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:22 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:22 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:22 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:22 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:22 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0665245 (min) 0.140674 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0748246 (min) 0.219958 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.09372 (min) 2.46089 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.82615 (min) 3.53579 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.94842 (min) 24.8329 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.568 (min) 14.105 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1506 (min) 32.2883 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000113357 (min) 8.85726e-05 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:22 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:23 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:23 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:23 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
44:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0]
44:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3]
44:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 187.   0.]
 [  0.   0.   0.   0.   0.]
 [  9.   0.   0.  29.   0.]
 [  3.   0. 152.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013010259625516227
44:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 31
44:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 31 elements
44:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [274, 0, 188, 38, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:23 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:23 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:23 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:23 INFO    opendrift.models.basemodel:1985: 2024-06-10 20:44:03.285310 - step 13 of 96 - 500 active elements (0 deactivated)
44:23 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:23 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:23 DEBUG   opendrift.models.basemodel:2004:               57.55780836719673 <- latitude  -> 57.67410741560899
44:23 DEBUG   opendrift.models.basemodel:2009:               10.521828109367647 <- longitude -> 10.716581005436396
44:23 DEBUG   opendrift.models.basemodel:2014:               -22.691028594970703   <- z ->   -0.2218799498837578
44:23 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 20:00:00 (before)
                2024-06-10 21:00:00 (after)
44:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 20:00:00) in space  (linearNDFast)
44:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 21:00:00) in space  (linearNDFast)
44:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 20:00:00, weight 0.27) and
                      after (2024-06-10 21:00:00, weight 0.73) in time
44:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47818297357214 and -59.28343005522568 degrees.
44:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47818297357214 and -59.28343005522568 degrees.
44:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0666179 (min) 0.146725 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0545086 (min) 0.234139 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.40912 (min) 2.6296 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.9601 (min) 3.49535 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.96342 (min) 24.785 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6136 (min) 14.0817 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.15 (min) 32.2836 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00011286 (min) 8.66451e-05 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:23 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:23 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:23 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
44:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 2]
44:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 0]
44:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 196.   0.]
 [  0.   0.   0.   0.   0.]
 [ 10.   0.   0.  37.   0.]
 [  3.   0. 183.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013504893514541436
44:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:23 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:23 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 27
44:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 27 elements
44:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [266, 0, 203, 31, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:23 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:23 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:23 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:23 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:23 INFO    opendrift.models.basemodel:1985: 2024-06-10 21:14:03.285310 - step 14 of 96 - 500 active elements (0 deactivated)
44:23 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:23 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:23 DEBUG   opendrift.models.basemodel:2004:               57.55780836719673 <- latitude  -> 57.677604338544604
44:23 DEBUG   opendrift.models.basemodel:2009:               10.52318024163851 <- longitude -> 10.717127846165425
44:23 DEBUG   opendrift.models.basemodel:2014:               -22.552001953125   <- z ->   -0.17968623467075434
44:23 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 21:00:00 (before)
                2024-06-10 22:00:00 (after)
44:24 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:24 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:24 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:24 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:24 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:24 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:24 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 40x36x7) for time after (2024-06-10 22:00:00)
44:24 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 21:00:00) in space  (linearNDFast)
44:24 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:24 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 22:00:00) in space  (linearNDFast)
44:24 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:24 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 21:00:00, weight 0.77) and
                      after (2024-06-10 22:00:00, weight 0.23) in time
44:24 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:24 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47683083978022 and -59.28288321194513 degrees.
44:24 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47683083978022 and -59.28288321194513 degrees.
44:24 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:24 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:24 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:24 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:24 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:24 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:24 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:24 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:24 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:24 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:24 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:24 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:24 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:24 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:24 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:24 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:24 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:24 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:24 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:24 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:24 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0671037 (min) 0.154281 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0655934 (min) 0.247947 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.07078 (min) 2.56694 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.53498 (min) 4.14017 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 9.98288 (min) 24.7377 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5919 (min) 14.0426 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1602 (min) 32.2909 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00011234 (min) 8.50085e-05 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:24 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:24 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:24 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:24 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:24 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:24 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:24 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
44:24 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2 0 0 0 0]
44:24 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 3 3 3]
44:24 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 205.   0.]
 [  0.   0.   0.   0.   0.]
 [ 11.   0.   0.  48.   0.]
 [  3.   0. 210.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:24 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:24 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:24 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:24 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:24 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014614803209424062
44:24 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:24 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:24 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:24 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:24 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 22
44:24 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:24 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 22 elements
44:24 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:24 INFO    opendrift.models.chemicaldrift:1861: partitioning: [258, 0, 211, 31, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:24 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:24 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:24 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:24 INFO    opendrift.models.basemodel:1985: 2024-06-10 21:44:03.285310 - step 15 of 96 - 500 active elements (0 deactivated)
44:24 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:24 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:24 DEBUG   opendrift.models.basemodel:2004:               57.55780836719673 <- latitude  -> 57.68118918193606
44:24 DEBUG   opendrift.models.basemodel:2009:               10.524967215844546 <- longitude -> 10.71698425294611
44:24 DEBUG   opendrift.models.basemodel:2014:               -22.552001953125   <- z ->   -0.21901776645231974
44:24 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:24 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:24 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:24 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:24 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 21:00:00 (before)
                2024-06-10 22:00:00 (after)
44:24 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 21:00:00) in space  (linearNDFast)
44:24 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:24 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 22:00:00) in space  (linearNDFast)
44:24 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:24 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 21:00:00, weight 0.27) and
                      after (2024-06-10 22:00:00, weight 0.73) in time
44:24 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:24 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47504385629543 and -59.28302681189025 degrees.
44:24 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47504385629543 and -59.28302681189025 degrees.
44:24 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:24 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:24 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:24 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:24 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:24 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:24 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:24 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:24 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:24 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:24 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:24 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:24 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:24 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:24 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:24 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:24 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:24 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:24 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:24 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:24 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:24 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0680347 (min) 0.170282 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00674453 (min) 0.25661 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.994961 (min) 2.18495 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.97286 (min) 5.31066 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.0018 (min) 24.6598 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6087 (min) 14.0356 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.141 (min) 32.2738 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000111894 (min) 8.37022e-05 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:24 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:24 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:24 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:24 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:24 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:24 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
44:24 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 2 0 0 0 2 0 0 0 0]
44:24 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 0 3 3 3 0 3 3 3 3]
44:24 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 216.   0.]
 [  0.   0.   0.   0.   0.]
 [ 14.   0.   0.  61.   0.]
 [  3.   0. 232.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:24 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:24 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:24 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:24 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:24 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.023833848484040025
44:24 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:24 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:24 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:24 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:24 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 39
44:24 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:24 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 39 elements
44:24 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:24 INFO    opendrift.models.chemicaldrift:1861: partitioning: [250, 0, 229, 21, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:24 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:24 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:24 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:24 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:24 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:24 INFO    opendrift.models.basemodel:1985: 2024-06-10 22:14:03.285310 - step 16 of 96 - 500 active elements (0 deactivated)
44:24 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:24 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:24 DEBUG   opendrift.models.basemodel:2004:               57.56000366194171 <- latitude  -> 57.68527224568263
44:24 DEBUG   opendrift.models.basemodel:2009:               10.527065879715519 <- longitude -> 10.7171454275873
44:24 DEBUG   opendrift.models.basemodel:2014:               -22.552001953125   <- z ->   -0.03367755904663694
44:24 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:24 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:24 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:24 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:24 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:24 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 22:00:00 (before)
                2024-06-10 23:00:00 (after)
44:25 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:25 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:25 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:25 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:25 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 41x36x7) for time after (2024-06-10 23:00:00)
44:25 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 22:00:00) in space  (linearNDFast)
44:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:25 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 23:00:00) in space  (linearNDFast)
44:25 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:25 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 22:00:00, weight 0.77) and
                      after (2024-06-10 23:00:00, weight 0.23) in time
44:25 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47294520286717 and -59.28286563490368 degrees.
44:25 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47294520286717 and -59.28286563490368 degrees.
44:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:25 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:25 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:25 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:25 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:25 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:25 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:25 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:25 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:25 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:25 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:25 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:25 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:25 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:25 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:25 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:26 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:26 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:26 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0660333 (min) 0.184994 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0337723 (min) 0.278938 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.834132 (min) 2.45074 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.44893 (min) 5.82165 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.0608 (min) 24.6601 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.596 (min) 14.0136 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1487 (min) 32.2751 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000105934 (min) 8.43585e-05 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:26 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:26 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:26 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:26 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:26 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:26 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:26 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 19
44:26 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 0 2 0 2 0 0 0 0 0 2 2 0 0 0 2]
44:26 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 3 0 3 0 3 3 3 3 3 0 0 3 3 3 0]
44:26 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 227.   0.]
 [  0.   0.   0.   0.   0.]
 [ 22.   0.   0.  79.   0.]
 [  3.   0. 271.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:26 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:26 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:26 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.028834877694034238
44:26 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:26 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:26 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:26 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 18
44:26 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 18 elements
44:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:26 INFO    opendrift.models.chemicaldrift:1861: partitioning: [247, 0, 232, 21, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:26 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:26 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:26 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:26 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:26 INFO    opendrift.models.basemodel:1985: 2024-06-10 22:44:03.285310 - step 17 of 96 - 500 active elements (0 deactivated)
44:26 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:26 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:26 DEBUG   opendrift.models.basemodel:2004:               57.56241453807636 <- latitude  -> 57.689149976105654
44:26 DEBUG   opendrift.models.basemodel:2009:               10.527892444066358 <- longitude -> 10.717443017277697
44:26 DEBUG   opendrift.models.basemodel:2014:               -22.552001953125   <- z ->   -0.14987104495919623
44:26 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 22:00:00 (before)
                2024-06-10 23:00:00 (after)
44:26 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 22:00:00) in space  (linearNDFast)
44:26 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:26 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-10 23:00:00) in space  (linearNDFast)
44:26 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:26 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 22:00:00, weight 0.27) and
                      after (2024-06-10 23:00:00, weight 0.73) in time
44:26 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:26 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47211863870129 and -59.28256803815629 degrees.
44:26 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47211863870129 and -59.28256803815629 degrees.
44:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:26 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:26 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:26 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:26 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:26 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:26 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:26 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:26 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:26 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:26 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:26 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:26 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0615809 (min) 0.206925 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0778621 (min) 0.300016 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.10158 (min) 2.54471 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.95004 (min) 5.56796 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.168 (min) 24.6408 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5706 (min) 13.9955 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1527 (min) 32.264 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000106851 (min) 8.74546e-05 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:26 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:26 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:26 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:26 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:26 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:26 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:26 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 14
44:26 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 0 0 0 0 0 0 0 2 0]
44:26 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3 3 3 3 3 3 0 3]
44:26 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 239.   0.]
 [  0.   0.   0.   0.   0.]
 [ 24.   0.   0.  86.   0.]
 [  3.   0. 289.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:26 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:26 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:26 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02692460883263958
44:26 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:26 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:26 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:26 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:26 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:26 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 30
44:26 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:26 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 30 elements
44:26 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:26 INFO    opendrift.models.chemicaldrift:1861: partitioning: [237, 0, 249, 14, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:26 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:26 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:26 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:26 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:26 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:26 INFO    opendrift.models.basemodel:1985: 2024-06-10 23:14:03.285310 - step 18 of 96 - 500 active elements (0 deactivated)
44:26 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:26 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:26 DEBUG   opendrift.models.basemodel:2004:               57.56522988052575 <- latitude  -> 57.69382781012612
44:26 DEBUG   opendrift.models.basemodel:2009:               10.53061137533671 <- longitude -> 10.717515137933269
44:26 DEBUG   opendrift.models.basemodel:2014:               -22.375450194536196   <- z ->   -0.19911102091044663
44:26 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:26 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:26 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:26 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:26 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:26 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 23:00:00 (before)
                2024-06-11 00:00:00 (after)
44:27 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:27 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:27 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 43x36x7) for time after (2024-06-11 00:00:00)
44:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 23:00:00) in space  (linearNDFast)
44:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 00:00:00) in space  (linearNDFast)
44:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 23:00:00, weight 0.77) and
                      after (2024-06-11 00:00:00, weight 0.23) in time
44:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46939970788469 and -59.282495915584924 degrees.
44:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46939970788469 and -59.282495915584924 degrees.
44:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0655759 (min) 0.220872 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.120719 (min) 0.306306 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.01474 (min) 2.31377 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.70953 (min) 5.32569 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2489 (min) 24.576 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5726 (min) 13.9442 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1321 (min) 32.271 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000102903 (min) 9.31494e-05 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:27 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:27 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:27 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:27 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 17
44:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0]
44:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 3 3 3 3 3 3 3 3 3 3 0 3 3]
44:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 253.   0.]
 [  0.   0.   0.   0.   0.]
 [ 27.   0.   0.  97.   0.]
 [  3.   0. 319.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0228974546052613
44:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:27 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 25
44:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements
44:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [226, 0, 262, 12, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:27 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:27 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:27 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:27 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:27 INFO    opendrift.models.basemodel:1985: 2024-06-10 23:44:03.285310 - step 19 of 96 - 500 active elements (0 deactivated)
44:27 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:27 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:27 DEBUG   opendrift.models.basemodel:2004:               57.568875398634766 <- latitude  -> 57.69821062336077
44:27 DEBUG   opendrift.models.basemodel:2009:               10.531736400576438 <- longitude -> 10.71760374938687
44:27 DEBUG   opendrift.models.basemodel:2014:               -21.112484078572578   <- z ->   -0.11569739027447756
44:27 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-10 23:00:00 (before)
                2024-06-11 00:00:00 (after)
44:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-10 23:00:00) in space  (linearNDFast)
44:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 00:00:00) in space  (linearNDFast)
44:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-10 23:00:00, weight 0.27) and
                      after (2024-06-11 00:00:00, weight 0.73) in time
44:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.28240730625397 degrees.
44:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.28240730625397 degrees.
44:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0711686 (min) 0.246922 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.127489 (min) 0.31993 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.525981 (min) 1.71956 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 4.08348 (min) 4.6135 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.2685 (min) 24.4707 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5939 (min) 13.9316 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1539 (min) 32.2728 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.01664e-05 (min) 0.000101632 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:27 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:27 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:27 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 12
44:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 2 2 0]
44:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 0 0 3]
44:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 263.   0.]
 [  0.   0.   0.   0.   0.]
 [ 29.   0.   0. 106.   0.]
 [  3.   0. 344.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01678447774369534
44:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:27 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 26
44:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 26 elements
44:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [218, 0, 274, 8, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:27 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:27 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:27 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:27 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:27 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:27 INFO    opendrift.models.basemodel:1985: 2024-06-11 00:14:03.285310 - step 20 of 96 - 500 active elements (0 deactivated)
44:27 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:27 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:27 DEBUG   opendrift.models.basemodel:2004:               57.57251848841819 <- latitude  -> 57.70288850947315
44:27 DEBUG   opendrift.models.basemodel:2009:               10.531736400576442 <- longitude -> 10.72018428882321
44:27 DEBUG   opendrift.models.basemodel:2014:               -23.24937813240372   <- z ->   -0.040227136267123376
44:27 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 00:00:00 (before)
                2024-06-11 01:00:00 (after)
44:29 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:29 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:29 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 43x35x7) for time after (2024-06-11 01:00:00)
44:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 00:00:00) in space  (linearNDFast)
44:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 01:00:00) in space  (linearNDFast)
44:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 00:00:00, weight 0.77) and
                      after (2024-06-11 01:00:00, weight 0.23) in time
44:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.27982675945186 degrees.
44:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.27982675945186 degrees.
44:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0725772 (min) 0.269419 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.130259 (min) 0.337253 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.0599347 (min) 1.16866 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.84649 (min) 4.28846 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.3262 (min) 24.3595 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5986 (min) 13.9016 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1169 (min) 32.2575 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.44364e-05 (min) 0.000107484 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:29 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:29 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:29 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:29 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
44:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 2 0 2 0 0 0]
44:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 0 3 0 3 3 3]
44:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 271.   0.]
 [  0.   0.   0.   0.   0.]
 [ 32.   0.   0. 118.   0.]
 [  3.   0. 370.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01366786032313198
44:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21
44:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements
44:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [213, 0, 282, 5, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:29 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:29 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:29 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:29 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:29 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:29 INFO    opendrift.models.basemodel:1985: 2024-06-11 00:44:03.285310 - step 21 of 96 - 500 active elements (0 deactivated)
44:29 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:29 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:29 DEBUG   opendrift.models.basemodel:2004:               57.576967526165205 <- latitude  -> 57.70781379819553
44:29 DEBUG   opendrift.models.basemodel:2009:               10.531736400576438 <- longitude -> 10.724837498533784
44:29 DEBUG   opendrift.models.basemodel:2014:               -24.213389025193475   <- z ->   -0.3455285768603146
44:29 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 00:00:00 (before)
                2024-06-11 01:00:00 (after)
44:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 00:00:00) in space  (linearNDFast)
44:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 01:00:00) in space  (linearNDFast)
44:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 00:00:00, weight 0.27) and
                      after (2024-06-11 01:00:00, weight 0.73) in time
44:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.2751735394633 degrees.
44:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.2751735394633 degrees.
44:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0636954 (min) 0.295534 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.12849 (min) 0.3426 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.417735 (min) 0.655632 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.74629 (min) 4.33489 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.47 (min) 24.2272 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6052 (min) 13.9083 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1214 (min) 32.252 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -8.61973e-05 (min) 9.88903e-05 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:29 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:29 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:29 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:29 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 22
44:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0]
44:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3]
44:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 292.   0.]
 [  0.   0.   0.   0.   0.]
 [ 33.   0.   0. 128.   0.]
 [  3.   0. 391.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013582943990061339
44:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 31
44:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 31 elements
44:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [193, 0, 303, 4, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:29 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:29 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:29 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:29 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:29 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:29 INFO    opendrift.models.basemodel:1985: 2024-06-11 01:14:03.285310 - step 22 of 96 - 500 active elements (0 deactivated)
44:29 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:29 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:29 DEBUG   opendrift.models.basemodel:2004:               57.579715097442445 <- latitude  -> 57.71294842275223
44:29 DEBUG   opendrift.models.basemodel:2009:               10.531736400576442 <- longitude -> 10.730385925291769
44:29 DEBUG   opendrift.models.basemodel:2014:               -22.510528241961392   <- z ->   -0.1559868543867245
44:29 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 01:00:00 (before)
                2024-06-11 02:00:00 (after)
44:30 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:30 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:30 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:30 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:30 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:30 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:30 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 44x35x7) for time after (2024-06-11 02:00:00)
44:30 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 01:00:00) in space  (linearNDFast)
44:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:30 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 02:00:00) in space  (linearNDFast)
44:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:30 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 01:00:00, weight 0.77) and
                      after (2024-06-11 02:00:00, weight 0.23) in time
44:30 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.26962511329979 degrees.
44:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.26962511329979 degrees.
44:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:30 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:30 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:30 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:30 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0573502 (min) 0.288214 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.12493 (min) 0.346024 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.632721 (min) 0.292824 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.57951 (min) 4.3533 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.5475 (min) 24.0684 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6133 (min) 13.8837 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1254 (min) 32.2509 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -9.34021e-05 (min) 0.000103725 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:30 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:30 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:30 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:30 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:30 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:30 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:30 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
44:30 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 2 0 0 0 0 0]
44:30 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 0 3 3 3 3 3]
44:30 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 300.   0.]
 [  0.   0.   0.   0.   0.]
 [ 35.   0.   0. 137.   0.]
 [  3.   0. 422.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:30 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:30 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:30 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013749976120657115
44:30 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:30 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:30 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:30 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16
44:30 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements
44:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:30 INFO    opendrift.models.chemicaldrift:1861: partitioning: [187, 0, 309, 4, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:30 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:30 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:30 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:30 INFO    opendrift.models.basemodel:1985: 2024-06-11 01:44:03.285310 - step 23 of 96 - 500 active elements (0 deactivated)
44:30 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:30 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:30 DEBUG   opendrift.models.basemodel:2004:               57.58335519832224 <- latitude  -> 57.71773016154894
44:30 DEBUG   opendrift.models.basemodel:2009:               10.531736400576442 <- longitude -> 10.737996167712772
44:30 DEBUG   opendrift.models.basemodel:2014:               -23.661009516351367   <- z ->   -0.19835333763556673
44:30 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:30 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 01:00:00 (before)
                2024-06-11 02:00:00 (after)
44:30 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 01:00:00) in space  (linearNDFast)
44:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:30 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 02:00:00) in space  (linearNDFast)
44:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:30 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 01:00:00, weight 0.27) and
                      after (2024-06-11 02:00:00, weight 0.73) in time
44:30 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.26201484716837 degrees.
44:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.26201484716837 degrees.
44:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:30 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:30 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:30 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:30 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0656356 (min) 0.283663 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.11934 (min) 0.313887 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.564106 (min) 0.114291 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.64124 (min) 4.24377 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.6662 (min) 24.4892 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5928 (min) 13.8689 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1699 (min) 32.2585 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000149403 (min) 0.000110786 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:30 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:30 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:30 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:30 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:30 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:30 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:30 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:30 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 13
44:30 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 0 2 0 2 0 0 0 2 0]
44:30 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 3 0 3 0 3 3 3 0 3]
44:30 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 308.   0.]
 [  0.   0.   0.   0.   0.]
 [ 40.   0.   0. 145.   0.]
 [  3.   0. 438.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:30 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:30 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:30 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013247971518634577
44:30 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:30 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:30 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:30 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:30 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21
44:30 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements
44:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:30 INFO    opendrift.models.chemicaldrift:1861: partitioning: [184, 0, 312, 4, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:30 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:30 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:30 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:30 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
44:30 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:30 INFO    opendrift.models.basemodel:1985: 2024-06-11 02:14:03.285310 - step 24 of 96 - 500 active elements (0 deactivated)
44:30 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:30 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:30 DEBUG   opendrift.models.basemodel:2004:               57.58759892320954 <- latitude  -> 57.721793712989914
44:30 DEBUG   opendrift.models.basemodel:2009:               10.531736400576438 <- longitude -> 10.74583252593105
44:30 DEBUG   opendrift.models.basemodel:2014:               -22.93814862217083   <- z ->   -0.018782438334245977
44:30 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:30 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 02:00:00 (before)
                2024-06-11 03:00:00 (after)
44:32 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:32 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:32 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:32 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:32 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:32 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:32 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 46x35x7) for time after (2024-06-11 03:00:00)
44:32 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 02:00:00) in space  (linearNDFast)
44:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:32 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 03:00:00) in space  (linearNDFast)
44:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:32 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 02:00:00, weight 0.77) and
                      after (2024-06-11 03:00:00, weight 0.23) in time
44:32 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.254178492515024 degrees.
44:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.254178492515024 degrees.
44:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:32 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:32 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:32 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:32 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0741867 (min) 0.292235 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.106752 (min) 0.299472 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.402982 (min) 0.054667 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.61047 (min) 4.28317 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 25.6176 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6239 (min) 13.8913 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1689 (min) 32.2547 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000299841 (min) 0.000116941 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:32 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:32 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:32 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:32 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:32 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:32 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:32 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 11
44:32 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 0 2 2 0 2 2 0]
44:32 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 3 0 0 3 0 0 3]
44:32 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 313.   0.]
 [  0.   0.   0.   0.   0.]
 [ 46.   0.   0. 158.   0.]
 [  3.   0. 459.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:32 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:32 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:32 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013330434183625638
44:32 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:32 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:32 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:32 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
44:32 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
44:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:32 INFO    opendrift.models.chemicaldrift:1861: partitioning: [185, 0, 310, 5, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:32 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:32 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:32 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:32 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:32 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:32 INFO    opendrift.models.basemodel:1985: 2024-06-11 02:44:03.285310 - step 25 of 96 - 500 active elements (0 deactivated)
44:32 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:32 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:32 DEBUG   opendrift.models.basemodel:2004:               57.590050320675836 <- latitude  -> 57.72525325918162
44:32 DEBUG   opendrift.models.basemodel:2009:               10.531736400576438 <- longitude -> 10.75200727366931
44:32 DEBUG   opendrift.models.basemodel:2014:               -22.802069502537165   <- z ->   -0.14147186452137744
44:32 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:32 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 02:00:00 (before)
                2024-06-11 03:00:00 (after)
44:32 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 02:00:00) in space  (linearNDFast)
44:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:32 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 03:00:00) in space  (linearNDFast)
44:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:32 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 02:00:00, weight 0.27) and
                      after (2024-06-11 03:00:00, weight 0.73) in time
44:32 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.24800374752831 degrees.
44:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.24800374752831 degrees.
44:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:32 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:32 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:32 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:32 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0830393 (min) 0.293026 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0837103 (min) 0.28 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.43273 (min) -0.00839806 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.6445 (min) 4.48162 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 26.7036 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6066 (min) 13.8786 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.134 (min) 32.244 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000308757 (min) 0.000122069 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:32 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:32 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:32 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:32 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:32 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:32 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:32 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:32 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
44:32 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 2]
44:32 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0]
44:32 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 319.   0.]
 [  0.   0.   0.   0.   0.]
 [ 47.   0.   0. 171.   0.]
 [  3.   0. 476.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:32 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:32 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:32 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014526301696591101
44:32 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:32 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:32 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:32 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up
44:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:32 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16
44:32 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements
44:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:32 INFO    opendrift.models.chemicaldrift:1861: partitioning: [180, 0, 312, 8, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:32 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:32 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:32 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:32 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:32 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:32 INFO    opendrift.models.basemodel:1985: 2024-06-11 03:14:03.285310 - step 26 of 96 - 500 active elements (0 deactivated)
44:32 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:32 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:32 DEBUG   opendrift.models.basemodel:2004:               57.590050320675836 <- latitude  -> 57.72806400453583
44:32 DEBUG   opendrift.models.basemodel:2009:               10.531736400576444 <- longitude -> 10.757482932117155
44:32 DEBUG   opendrift.models.basemodel:2014:               -25.101588129643197   <- z ->   -0.03983922876437729
44:32 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:32 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 03:00:00 (before)
                2024-06-11 04:00:00 (after)
44:33 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:33 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:33 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:33 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:33 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:33 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:33 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 47x34x7) for time after (2024-06-11 04:00:00)
44:33 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 03:00:00) in space  (linearNDFast)
44:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:33 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 04:00:00) in space  (linearNDFast)
44:33 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:33 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 03:00:00, weight 0.77) and
                      after (2024-06-11 04:00:00, weight 0.23) in time
44:33 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.24252810011113 degrees.
44:33 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.24252810011113 degrees.
44:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:33 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:33 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:33 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:33 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:33 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:33 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:33 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:33 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:33 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:33 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:33 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:33 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:33 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:33 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:33 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:33 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:33 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:33 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:33 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:33 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.089994 (min) 0.272713 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0321356 (min) 0.24166 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.487199 (min) 0.219686 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.53886 (min) 4.38996 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 27.5708 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.627 (min) 13.8573 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1795 (min) 32.3054 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000341107 (min) 0.000125648 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:33 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:33 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:33 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:33 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:33 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:33 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:33 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:33 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 16
44:33 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 2 0 0 0 0 2 2 0 2 0 0]
44:33 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 0 3 3 3 3 0 0 3 0 3 3]
44:33 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 330.   0.]
 [  0.   0.   0.   0.   0.]
 [ 52.   0.   0. 184.   0.]
 [  3.   0. 492.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:33 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:33 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:33 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:33 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:33 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013931649941818412
44:33 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:33 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:33 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:33 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:33 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:33 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:33 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:33 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:33 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 22
44:34 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 22 elements
44:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:34 INFO    opendrift.models.chemicaldrift:1861: partitioning: [174, 0, 313, 13, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:34 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:34 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:34 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:34 INFO    opendrift.models.basemodel:1985: 2024-06-11 03:44:03.285310 - step 27 of 96 - 500 active elements (0 deactivated)
44:34 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:34 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:34 DEBUG   opendrift.models.basemodel:2004:               57.590050320675836 <- latitude  -> 57.730823593074575
44:34 DEBUG   opendrift.models.basemodel:2009:               10.531736400576449 <- longitude -> 10.765716260698559
44:34 DEBUG   opendrift.models.basemodel:2014:               -22.77204704284668   <- z ->   0.0
44:34 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 03:00:00 (before)
                2024-06-11 04:00:00 (after)
44:34 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 03:00:00) in space  (linearNDFast)
44:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:34 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 04:00:00) in space  (linearNDFast)
44:34 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:34 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 03:00:00, weight 0.27) and
                      after (2024-06-11 04:00:00, weight 0.73) in time
44:34 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.234294765327675 degrees.
44:34 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.234294765327675 degrees.
44:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:34 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:34 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:34 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:34 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:34 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:34 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:34 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:34 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:34 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0947955 (min) 0.257344 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0132851 (min) 0.222833 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.3847 (min) 0.551386 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 3.27895 (min) 3.95036 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 28.3164 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6341 (min) 13.852 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1406 (min) 32.2509 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000316647 (min) 0.00012747 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:34 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:34 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:34 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:34 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:34 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:34 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
44:34 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0]
44:34 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3]
44:34 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 337.   0.]
 [  0.   0.   0.   0.   0.]
 [ 52.   0.   0. 200.   0.]
 [  3.   0. 514.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:34 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:34 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:34 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01128910414220473
44:34 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:34 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:34 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:34 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:34 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
44:34 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:34 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
44:34 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:34 INFO    opendrift.models.chemicaldrift:1861: partitioning: [167, 0, 312, 21, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:34 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:34 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:34 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:34 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:34 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:34 INFO    opendrift.models.basemodel:1985: 2024-06-11 04:14:03.285310 - step 28 of 96 - 500 active elements (0 deactivated)
44:34 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:34 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:34 DEBUG   opendrift.models.basemodel:2004:               57.59005032067584 <- latitude  -> 57.73274345017787
44:34 DEBUG   opendrift.models.basemodel:2009:               10.531736400576454 <- longitude -> 10.773037891550413
44:34 DEBUG   opendrift.models.basemodel:2014:               -22.224709794043306   <- z ->   -0.10419793030665703
44:34 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:34 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:34 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:34 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:34 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:34 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 04:00:00 (before)
                2024-06-11 05:00:00 (after)
44:35 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:35 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:35 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:35 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:35 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:35 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:35 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 48x35x7) for time after (2024-06-11 05:00:00)
44:35 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 04:00:00) in space  (linearNDFast)
44:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:35 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 05:00:00) in space  (linearNDFast)
44:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:35 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 04:00:00, weight 0.77) and
                      after (2024-06-11 05:00:00, weight 0.23) in time
44:35 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.226973120714256 degrees.
44:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274685038715 and -59.226973120714256 degrees.
44:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:35 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:35 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:35 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:35 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0965093 (min) 0.238177 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0625253 (min) 0.18502 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.485331 (min) 0.761531 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.80038 (min) 3.39469 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 29.0729 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6223 (min) 13.8499 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1442 (min) 32.2533 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000194653 (min) 0.000126548 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:35 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:35 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:35 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:35 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:35 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:35 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:35 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
44:35 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 2 0 0]
44:35 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 0 3 3]
44:35 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 343.   0.]
 [  0.   0.   0.   0.   0.]
 [ 54.   0.   0. 208.   0.]
 [  3.   0. 521.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:35 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:35 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:35 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.00834490809586805
44:35 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:35 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:35 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:35 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:35 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
44:35 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
44:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:35 INFO    opendrift.models.chemicaldrift:1861: partitioning: [163, 0, 308, 29, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:35 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:35 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:35 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:35 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:35 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:35 INFO    opendrift.models.basemodel:1985: 2024-06-11 04:44:03.285310 - step 29 of 96 - 500 active elements (0 deactivated)
44:35 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:35 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:35 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.73259066001744
44:35 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.780091888875043
44:35 DEBUG   opendrift.models.basemodel:2014:               -23.299491130566196   <- z ->   -0.08139183879243872
44:35 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:35 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 04:00:00 (before)
                2024-06-11 05:00:00 (after)
44:35 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 04:00:00) in space  (linearNDFast)
44:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:35 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 05:00:00) in space  (linearNDFast)
44:35 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:35 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 04:00:00, weight 0.27) and
                      after (2024-06-11 05:00:00, weight 0.73) in time
44:35 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.21991913840268 degrees.
44:35 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.21991913840268 degrees.
44:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:35 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:35 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:35 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:35 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:35 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:35 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:35 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:35 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:35 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.09472 (min) 0.221593 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0968868 (min) 0.149902 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.810842 (min) 0.833771 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.58585 (min) 2.80624 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 29.5578 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6143 (min) 13.8504 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1666 (min) 32.2554 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00019162 (min) 0.000122514 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:35 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:35 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:35 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:35 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:35 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:35 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:35 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:35 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
44:35 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 2 0 0 0]
44:35 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 0 3 3 3]
44:35 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 348.   0.]
 [  0.   0.   0.   0.   0.]
 [ 57.   0.   0. 217.   0.]
 [  3.   0. 528.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:35 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:35 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:35 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.005822633515031389
44:35 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:35 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:35 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:35 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:35 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:35 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
44:35 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:35 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
44:35 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:35 INFO    opendrift.models.chemicaldrift:1861: partitioning: [161, 0, 296, 43, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:35 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:35 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:35 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:35 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:35 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:35 INFO    opendrift.models.basemodel:1985: 2024-06-11 05:14:03.285310 - step 30 of 96 - 500 active elements (0 deactivated)
44:35 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:35 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:35 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.73238272531159
44:35 DEBUG   opendrift.models.basemodel:2009:               10.531736400576461 <- longitude -> 10.7867817627761
44:35 DEBUG   opendrift.models.basemodel:2014:               -23.919494396259317   <- z ->   -0.17857859586614788
44:35 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:35 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:35 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:35 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:35 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:35 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 05:00:00 (before)
                2024-06-11 06:00:00 (after)
44:36 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:36 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:36 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:36 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:36 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:36 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:36 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 48x35x7) for time after (2024-06-11 06:00:00)
44:36 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 05:00:00) in space  (linearNDFast)
44:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:36 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 06:00:00) in space  (linearNDFast)
44:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:36 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 05:00:00, weight 0.77) and
                      after (2024-06-11 06:00:00, weight 0.23) in time
44:36 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.2132292549545 degrees.
44:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.2132292549545 degrees.
44:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:36 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:36 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:36 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:36 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:36 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:36 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:36 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:36 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:36 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0897267 (min) 0.186878 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.11844 (min) 0.128401 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.26059 (min) 0.270214 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.882615 (min) 2.08305 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 29.9141 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.64 (min) 13.8498 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1978 (min) 32.2768 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000211199 (min) 0.000257866 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:36 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:36 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:36 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:36 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:36 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:36 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:36 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:36 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
44:36 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0 2 0 2]
44:36 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3 0 3 0]
44:36 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 351.   0.]
 [  0.   0.   0.   0.   0.]
 [ 62.   0.   0. 229.   0.]
 [  3.   0. 531.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:36 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:36 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:36 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0031435121739724595
44:36 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:36 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:36 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:36 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:36 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:36 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:36 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:36 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:36 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:36 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:36 INFO    opendrift.models.chemicaldrift:1861: partitioning: [163, 0, 275, 62, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:36 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:36 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:36 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:36 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:36 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:36 INFO    opendrift.models.basemodel:1985: 2024-06-11 05:44:03.285310 - step 31 of 96 - 500 active elements (0 deactivated)
44:36 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:36 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:36 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.73117919831299
44:36 DEBUG   opendrift.models.basemodel:2009:               10.531736400576461 <- longitude -> 10.791957648983741
44:36 DEBUG   opendrift.models.basemodel:2014:               -23.876984707719387   <- z ->   -0.31781515122254195
44:36 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:36 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:36 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:36 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:36 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:36 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 05:00:00 (before)
                2024-06-11 06:00:00 (after)
44:36 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 05:00:00) in space  (linearNDFast)
44:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:36 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 06:00:00) in space  (linearNDFast)
44:36 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:36 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 05:00:00, weight 0.27) and
                      after (2024-06-11 06:00:00, weight 0.73) in time
44:36 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:36 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.208053379271966 degrees.
44:37 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.208053379271966 degrees.
44:37 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:37 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:37 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:37 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:37 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:37 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:37 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:37 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:37 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:37 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:37 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:37 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:37 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:37 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:37 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:37 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:37 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:37 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:37 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:37 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:37 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:37 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0810982 (min) 0.157741 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.132748 (min) 0.132371 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.83925 (min) -0.995199 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.698634 (min) 1.14278 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 29.9452 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.634 (min) 13.8498 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2018 (min) 32.2579 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00011373 (min) 0.000322416 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:37 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:37 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
44:37 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:37 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:37 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:37 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:37 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
44:37 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2]
44:37 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0]
44:37 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 353.   0.]
 [  0.   0.   0.   0.   0.]
 [ 64.   0.   0. 245.   0.]
 [  3.   0. 531.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:37 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:37 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:37 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:37 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:37 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002930323060472839
44:37 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:37 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:37 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:37 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:37 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:37 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:37 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:37 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:37 INFO    opendrift.models.chemicaldrift:1861: partitioning: [163, 0, 265, 72, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:37 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:37 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:37 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:37 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:37 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:37 INFO    opendrift.models.basemodel:1985: 2024-06-11 06:14:03.285310 - step 32 of 96 - 500 active elements (0 deactivated)
44:37 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:37 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:37 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.72990457024778
44:37 DEBUG   opendrift.models.basemodel:2009:               10.531736400576461 <- longitude -> 10.79660943746779
44:37 DEBUG   opendrift.models.basemodel:2014:               -27.035924213902494   <- z ->   -0.31833929843777103
44:37 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:37 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:37 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:37 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:37 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:37 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 06:00:00 (before)
                2024-06-11 07:00:00 (after)
44:38 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:38 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:38 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:38 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:38 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 48x36x7) for time after (2024-06-11 07:00:00)
44:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 06:00:00) in space  (linearNDFast)
44:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 07:00:00) in space  (linearNDFast)
44:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 06:00:00, weight 0.77) and
                      after (2024-06-11 07:00:00, weight 0.23) in time
44:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.20340158630389 degrees.
44:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.20340158630389 degrees.
44:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.071017 (min) 0.139762 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.137965 (min) 0.142754 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.34721 (min) -1.92068 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.280952 (min) 0.793636 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 29.8851 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6413 (min) 13.8491 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1587 (min) 32.3431 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00020955 (min) 0.000372026 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:38 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:38 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:38 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:38 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 2]
44:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 0]
44:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 355.   0.]
 [  0.   0.   0.   0.   0.]
 [ 67.   0.   0. 253.   0.]
 [  3.   0. 531.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.00438389478637233
44:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
44:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
44:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [164, 0, 254, 82, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:38 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:38 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:38 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:38 INFO    opendrift.models.basemodel:1985: 2024-06-11 06:44:03.285310 - step 33 of 96 - 500 active elements (0 deactivated)
44:38 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:38 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:38 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.728624493489356
44:38 DEBUG   opendrift.models.basemodel:2009:               10.531736400576467 <- longitude -> 10.800355689484581
44:38 DEBUG   opendrift.models.basemodel:2014:               -28.44849053948037   <- z ->   -0.10308491151544066
44:38 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 06:00:00 (before)
                2024-06-11 07:00:00 (after)
44:38 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 06:00:00) in space  (linearNDFast)
44:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:38 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 07:00:00) in space  (linearNDFast)
44:38 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:38 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 06:00:00, weight 0.27) and
                      after (2024-06-11 07:00:00, weight 0.73) in time
44:38 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19965533733878 degrees.
44:38 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19965533733878 degrees.
44:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:38 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:38 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:38 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:38 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:38 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:38 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:38 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:38 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:38 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0592878 (min) 0.132675 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.132346 (min) 0.154488 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.76201 (min) -2.36155 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.323436 (min) 0.726165 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 29.7695 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6372 (min) 13.8684 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1615 (min) 32.3446 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000133474 (min) 0.00035546 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:38 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:38 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 7 elements to seafloor.
44:38 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:38 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:38 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:38 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:38 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
44:38 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2]
44:38 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0]
44:38 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 360.   0.]
 [  0.   0.   0.   0.   0.]
 [ 68.   0.   0. 267.   0.]
 [  3.   0. 537.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:38 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:38 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:38 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0058608092364148675
44:38 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:38 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:38 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:38 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:38 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:38 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:38 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 25
44:38 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:38 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements
44:38 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:38 INFO    opendrift.models.chemicaldrift:1861: partitioning: [160, 0, 270, 70, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:38 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:38 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:38 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:38 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:38 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:38 INFO    opendrift.models.basemodel:1985: 2024-06-11 07:14:03.285310 - step 34 of 96 - 500 active elements (0 deactivated)
44:38 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:38 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:38 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.729783791951284
44:38 DEBUG   opendrift.models.basemodel:2009:               10.531736400576463 <- longitude -> 10.802877017101096
44:38 DEBUG   opendrift.models.basemodel:2014:               -28.05427428580114   <- z ->   -0.14019619912925657
44:38 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:38 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:38 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:38 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:38 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:38 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 07:00:00 (before)
                2024-06-11 08:00:00 (after)
44:39 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:39 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:39 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:39 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:39 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:39 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:39 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 48x37x7) for time after (2024-06-11 08:00:00)
44:39 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 07:00:00) in space  (linearNDFast)
44:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:39 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 08:00:00) in space  (linearNDFast)
44:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:39 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 07:00:00, weight 0.77) and
                      after (2024-06-11 08:00:00, weight 0.23) in time
44:39 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.197133998894934 degrees.
44:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.197133998894934 degrees.
44:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:39 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:39 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:39 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:39 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0471002 (min) 0.132533 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0774965 (min) 0.161394 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.91932 (min) -2.37574 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.256047 (min) 0.518317 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 30.5214 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6382 (min) 13.8877 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2158 (min) 32.3569 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000115193 (min) 0.000345401 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:39 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:39 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:39 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:39 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:39 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:39 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:39 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
44:39 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 2 0]
44:39 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 0 3]
44:39 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 362.   0.]
 [  0.   0.   0.   0.   0.]
 [ 72.   0.   0. 275.   0.]
 [  3.   0. 562.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:39 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:39 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:39 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.006356513295420829
44:39 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:39 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:39 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:39 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 14
44:39 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 14 elements
44:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:39 INFO    opendrift.models.chemicaldrift:1861: partitioning: [162, 0, 273, 65, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:39 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:39 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:39 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:39 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:39 INFO    opendrift.models.basemodel:1985: 2024-06-11 07:44:03.285310 - step 35 of 96 - 500 active elements (0 deactivated)
44:39 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:39 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:39 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.73103242897421
44:39 DEBUG   opendrift.models.basemodel:2009:               10.53173640057646 <- longitude -> 10.804465848865735
44:39 DEBUG   opendrift.models.basemodel:2014:               -29.338594620621418   <- z ->   -0.2831554077876979
44:39 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:39 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 07:00:00 (before)
                2024-06-11 08:00:00 (after)
44:39 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 07:00:00) in space  (linearNDFast)
44:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:39 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 08:00:00) in space  (linearNDFast)
44:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:39 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 07:00:00, weight 0.27) and
                      after (2024-06-11 08:00:00, weight 0.73) in time
44:39 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.1955451797128 degrees.
44:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.1955451797128 degrees.
44:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:39 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:39 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:39 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:39 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0343927 (min) 0.136409 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0684085 (min) 0.16283 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.83123 (min) -2.15803 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.304067 (min) 0.30928 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 31.2112 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6406 (min) 13.9173 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1667 (min) 32.3692 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00014398 (min) 0.000315216 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:39 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:39 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:39 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:39 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:39 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:39 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:39 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
44:39 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2 0]
44:39 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0 3]
44:39 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 367.   0.]
 [  0.   0.   0.   0.   0.]
 [ 73.   0.   0. 282.   0.]
 [  3.   0. 576.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:39 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:39 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:39 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.005830973338658709
44:39 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:39 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:39 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 22
44:39 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 22 elements
44:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:39 INFO    opendrift.models.chemicaldrift:1861: partitioning: [158, 0, 284, 58, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:39 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:39 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:39 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:39 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:39 INFO    opendrift.models.basemodel:1985: 2024-06-11 08:14:03.285310 - step 36 of 96 - 500 active elements (0 deactivated)
44:39 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:39 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:39 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.732204829140436
44:39 DEBUG   opendrift.models.basemodel:2009:               10.53173640057646 <- longitude -> 10.805188306584663
44:39 DEBUG   opendrift.models.basemodel:2014:               -30.003245261699952   <- z ->   -0.11373447501595413
44:39 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:39 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 08:00:00 (before)
                2024-06-11 09:00:00 (after)
44:41 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:41 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:41 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:41 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:41 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:41 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:41 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 49x37x7) for time after (2024-06-11 09:00:00)
44:41 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 08:00:00) in space  (linearNDFast)
44:41 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:41 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 09:00:00) in space  (linearNDFast)
44:41 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:41 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 08:00:00, weight 0.77) and
                      after (2024-06-11 09:00:00, weight 0.23) in time
44:41 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:41 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19482271361211 degrees.
44:41 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19482271361211 degrees.
44:41 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:41 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:41 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:41 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:41 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:41 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:41 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:41 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:41 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:41 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:41 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:41 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:41 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:41 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:41 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:41 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:41 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:41 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:41 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:41 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:41 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:41 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:41 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.046587 (min) 0.137727 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0597697 (min) 0.166962 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.73206 (min) -2.06208 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.450745 (min) 0.306093 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 31.8257 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6426 (min) 13.9581 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1687 (min) 32.3893 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000165966 (min) 0.000278527 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:41 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:41 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:41 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:41 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:41 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:41 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:41 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:41 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2]
44:41 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0]
44:41 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 368.   0.]
 [  0.   0.   0.   0.   0.]
 [ 77.   0.   0. 292.   0.]
 [  3.   0. 598.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:41 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:41 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:41 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:41 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:41 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.005397738521560109
44:41 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:41 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:41 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:41 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:41 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10
44:41 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:41 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements
44:41 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:41 INFO    opendrift.models.chemicaldrift:1861: partitioning: [161, 0, 278, 61, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:41 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:41 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:41 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:41 INFO    opendrift.models.basemodel:1985: 2024-06-11 08:44:03.285310 - step 37 of 96 - 500 active elements (0 deactivated)
44:41 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:41 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:41 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.733026496805955
44:41 DEBUG   opendrift.models.basemodel:2009:               10.53173640057646 <- longitude -> 10.805148490413304
44:41 DEBUG   opendrift.models.basemodel:2014:               -30.53723177978666   <- z ->   -0.24030690671512772
44:41 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:41 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:41 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:41 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:41 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 08:00:00 (before)
                2024-06-11 09:00:00 (after)
44:41 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 08:00:00) in space  (linearNDFast)
44:41 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:41 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 09:00:00) in space  (linearNDFast)
44:41 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:41 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 08:00:00, weight 0.27) and
                      after (2024-06-11 09:00:00, weight 0.73) in time
44:41 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:41 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19486254310816 degrees.
44:41 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19486254310816 degrees.
44:41 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:41 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:41 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:41 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:41 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:41 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:41 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:41 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:41 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:41 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:41 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:41 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:41 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:41 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:41 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:41 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:41 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:41 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:41 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:41 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:41 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:41 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:41 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0232971 (min) 0.142191 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0485083 (min) 0.15199 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.59352 (min) -2.12391 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.251012 (min) 0.334627 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 32.2964 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6484 (min) 13.9954 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1721 (min) 32.4141 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000168038 (min) 0.000366431 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:41 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:41 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:41 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:41 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:41 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:41 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:41 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:41 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 0]
44:41 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 3]
44:41 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 370.   0.]
 [  0.   0.   0.   0.   0.]
 [ 80.   0.   0. 304.   0.]
 [  3.   0. 608.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:41 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:41 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:41 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:41 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:41 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004883268314817448
44:41 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:41 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:41 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:41 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:41 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:41 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
44:41 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:41 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
44:41 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:41 INFO    opendrift.models.chemicaldrift:1861: partitioning: [162, 0, 271, 67, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:41 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:41 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:41 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:41 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:41 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:41 INFO    opendrift.models.basemodel:1985: 2024-06-11 09:14:03.285310 - step 38 of 96 - 500 active elements (0 deactivated)
44:41 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:41 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:41 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.733443677041635
44:41 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.804624038731502
44:41 DEBUG   opendrift.models.basemodel:2014:               -28.650143058317763   <- z ->   -0.3665613920248983
44:41 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:41 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:41 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:41 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:41 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:41 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 09:00:00 (before)
                2024-06-11 10:00:00 (after)
44:42 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:42 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:42 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:42 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:42 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:43 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:43 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 49x37x7) for time after (2024-06-11 10:00:00)
44:43 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 09:00:00) in space  (linearNDFast)
44:43 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:43 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 10:00:00) in space  (linearNDFast)
44:43 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:43 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 09:00:00, weight 0.77) and
                      after (2024-06-11 10:00:00, weight 0.23) in time
44:43 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:43 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19538697615169 degrees.
44:43 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19538697615169 degrees.
44:43 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:43 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:43 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:43 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:43 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:43 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:43 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:43 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:43 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:43 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:43 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:43 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:43 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:43 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:43 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:43 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:43 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:43 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:43 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:43 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:43 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0464844 (min) 0.147696 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0346031 (min) 0.154776 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.50081 (min) -1.98189 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.298839 (min) 0.362648 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 32.5938 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6651 (min) 14.0504 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1743 (min) 32.4436 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000150143 (min) 0.000393909 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:43 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:43 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:43 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:43 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:43 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:43 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:43 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
44:43 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 2 0 2 2 0]
44:43 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 0 3 0 0 3]
44:43 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 376.   0.]
 [  0.   0.   0.   0.   0.]
 [ 84.   0.   0. 317.   0.]
 [  3.   0. 617.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:43 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:43 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:43 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004527235780783903
44:43 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:43 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:43 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
44:43 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
44:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:43 INFO    opendrift.models.chemicaldrift:1861: partitioning: [160, 0, 268, 72, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:43 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:43 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:43 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:43 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:43 INFO    opendrift.models.basemodel:1985: 2024-06-11 09:44:03.285310 - step 39 of 96 - 500 active elements (0 deactivated)
44:43 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:43 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:43 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.7335505483663
44:43 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.80379855214372
44:43 DEBUG   opendrift.models.basemodel:2014:               -27.624575516213152   <- z ->   -0.4048537240381851
44:43 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:43 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:43 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:43 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:43 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 09:00:00 (before)
                2024-06-11 10:00:00 (after)
44:43 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 09:00:00) in space  (linearNDFast)
44:43 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:43 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 10:00:00) in space  (linearNDFast)
44:43 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:43 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 09:00:00, weight 0.27) and
                      after (2024-06-11 10:00:00, weight 0.73) in time
44:43 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:43 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.196212471273796 degrees.
44:43 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.196212471273796 degrees.
44:43 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:43 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:43 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:43 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:43 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:43 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:43 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:43 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:43 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:43 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:43 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:43 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:43 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:43 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:43 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:43 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:43 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:43 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:43 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:43 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:43 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:43 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0431716 (min) 0.150668 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0205974 (min) 0.177758 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.41525 (min) -1.63664 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.460751 (min) 0.382721 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 32.7528 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6512 (min) 14.1221 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1752 (min) 32.4706 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000142117 (min) 0.000389182 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:43 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:43 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:43 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:43 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:43 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:43 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:43 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:43 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 0]
44:43 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 3]
44:43 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 379.   0.]
 [  0.   0.   0.   0.   0.]
 [ 86.   0.   0. 322.   0.]
 [  3.   0. 623.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:43 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:43 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:43 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004220368400241335
44:43 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:43 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:43 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:43 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:43 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:43 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
44:43 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:43 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
44:43 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:43 INFO    opendrift.models.chemicaldrift:1861: partitioning: [159, 0, 261, 80, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:43 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:43 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:43 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:43 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:43 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:43 INFO    opendrift.models.basemodel:1985: 2024-06-11 10:14:03.285310 - step 40 of 96 - 500 active elements (0 deactivated)
44:43 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:43 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:43 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.73341502763394
44:43 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.803014971712821
44:43 DEBUG   opendrift.models.basemodel:2014:               -29.01667737003569   <- z ->   -0.3594825869456435
44:43 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:43 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:43 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:43 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:43 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:43 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 10:00:00 (before)
                2024-06-11 11:00:00 (after)
44:44 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:44 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:44 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 49x37x7) for time after (2024-06-11 11:00:00)
44:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 10:00:00) in space  (linearNDFast)
44:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 11:00:00) in space  (linearNDFast)
44:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 10:00:00, weight 0.77) and
                      after (2024-06-11 11:00:00, weight 0.23) in time
44:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19699605219873 degrees.
44:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19699605219873 degrees.
44:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0384926 (min) 0.149915 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.02601 (min) 0.207855 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.26439 (min) -1.42702 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.651071 (min) 0.240072 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 32.7896 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6853 (min) 14.1679 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1797 (min) 32.4884 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000133036 (min) 0.000373337 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:44 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:44 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:44 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:44 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
44:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 2 0 2]
44:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 0 3 0]
44:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 383.   0.]
 [  0.   0.   0.   0.   0.]
 [ 89.   0.   0. 332.   0.]
 [  3.   0. 628.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0037134529316019695
44:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
44:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
44:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [158, 0, 253, 89, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:44 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:44 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:44 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:44 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:44 INFO    opendrift.models.basemodel:1985: 2024-06-11 10:44:03.285310 - step 41 of 96 - 500 active elements (0 deactivated)
44:44 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:44 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:44 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.73367448272403
44:44 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.80384947040568
44:44 DEBUG   opendrift.models.basemodel:2014:               -30.427538074510302   <- z ->   -0.2851656686864011
44:44 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 10:00:00 (before)
                2024-06-11 11:00:00 (after)
44:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 10:00:00) in space  (linearNDFast)
44:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 11:00:00) in space  (linearNDFast)
44:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 10:00:00, weight 0.27) and
                      after (2024-06-11 11:00:00, weight 0.73) in time
44:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0425541 (min) 0.152152 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0225103 (min) 0.216954 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.02322 (min) -1.32855 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.874202 (min) -0.0604105 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 32.7425 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6891 (min) 14.2773 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1809 (min) 32.502 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000126584 (min) 0.000338084 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:44 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:44 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:44 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0]
44:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3]
44:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 388.   0.]
 [  0.   0.   0.   0.   0.]
 [ 89.   0.   0. 340.   0.]
 [  3.   0. 631.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.003037831012817561
44:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7
44:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements
44:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [153, 0, 249, 98, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:44 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:44 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:44 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:44 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:44 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:44 INFO    opendrift.models.basemodel:1985: 2024-06-11 11:14:03.285310 - step 42 of 96 - 500 active elements (0 deactivated)
44:44 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:44 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:44 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.73644971039729
44:44 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.803849470405686
44:44 DEBUG   opendrift.models.basemodel:2014:               -29.106481584488414   <- z ->   -0.31484262711429484
44:44 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 11:00:00 (before)
                2024-06-11 12:00:00 (after)
44:45 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:45 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:45 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:45 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:45 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:45 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:45 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 49x36x7) for time after (2024-06-11 12:00:00)
44:45 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 11:00:00) in space  (linearNDFast)
44:45 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:45 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 12:00:00) in space  (linearNDFast)
44:45 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:45 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 11:00:00, weight 0.77) and
                      after (2024-06-11 12:00:00, weight 0.23) in time
44:45 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:45 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.19616154611356 degrees.
44:45 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.19616154611356 degrees.
44:45 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:45 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:45 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:45 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:45 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:45 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:45 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:45 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:45 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:45 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:45 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:45 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:45 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:45 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:45 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:45 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:45 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:45 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:45 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:45 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:45 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:45 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:45 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:45 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:45 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:45 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:45 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:45 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:45 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:45 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.0619345 (min) 0.152061 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0126215 (min) 0.243297 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.86293 (min) -1.01861 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.03565 (min) -0.189633 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 32.6701 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.686 (min) 14.3281 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1837 (min) 32.5157 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000123247 (min) 0.000298122 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:45 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:45 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:45 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:46 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:46 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 2]
44:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 0]
44:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 389.   0.]
 [  0.   0.   0.   0.   0.]
 [ 93.   0.   0. 351.   0.]
 [  3.   0. 638.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0026711453227694372
44:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
44:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
44:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [156, 0, 246, 98, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:46 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:46 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:46 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
44:46 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:46 INFO    opendrift.models.basemodel:1985: 2024-06-11 11:44:03.285310 - step 43 of 96 - 500 active elements (0 deactivated)
44:46 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:46 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:46 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.73941517590928
44:46 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.803849470405686
44:46 DEBUG   opendrift.models.basemodel:2014:               -28.29942746242384   <- z ->   -0.3422627186545232
44:46 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 11:00:00 (before)
                2024-06-11 12:00:00 (after)
44:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 11:00:00) in space  (linearNDFast)
44:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 12:00:00) in space  (linearNDFast)
44:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 11:00:00, weight 0.27) and
                      after (2024-06-11 12:00:00, weight 0.73) in time
44:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.140599 (min) 0.149703 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.00668571 (min) 0.264583 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.83195 (min) -0.628077 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.14443 (min) -0.275038 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 32.5477 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6925 (min) 14.4374 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1866 (min) 32.5276 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000129339 (min) 0.000258751 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:46 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:46 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:46 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:46 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:46 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
44:46 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2 2 0 2 2]
44:46 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0 0 3 0 0]
44:46 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 391.   0.]
 [  0.   0.   0.   0.   0.]
 [100.   0.   0. 358.   0.]
 [  3.   0. 646.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:46 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:46 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:46 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0025226743527119876
44:46 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:46 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:46 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:46 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:46 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:46 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 13
44:46 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:46 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 13 elements
44:46 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:46 INFO    opendrift.models.chemicaldrift:1861: partitioning: [161, 0, 247, 92, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:46 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:46 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:46 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:46 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
44:46 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:46 INFO    opendrift.models.basemodel:1985: 2024-06-11 12:14:03.285310 - step 44 of 96 - 500 active elements (0 deactivated)
44:46 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:46 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:46 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.74290087196827
44:46 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.803849470405689
44:46 DEBUG   opendrift.models.basemodel:2014:               -29.532737778204087   <- z ->   -0.40328064652815365
44:46 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:46 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 12:00:00 (before)
                2024-06-11 13:00:00 (after)
44:47 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:47 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:47 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:47 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:47 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:47 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:47 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 49x36x7) for time after (2024-06-11 13:00:00)
44:47 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 12:00:00) in space  (linearNDFast)
44:47 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:47 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 13:00:00) in space  (linearNDFast)
44:47 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:47 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 12:00:00, weight 0.77) and
                      after (2024-06-11 13:00:00, weight 0.23) in time
44:47 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:47 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:47 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:47 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:47 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:47 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:47 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:47 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:47 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:47 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:47 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:47 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:47 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:47 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:47 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:47 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:47 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:47 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:47 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:47 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:47 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:47 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:47 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:47 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.108793 (min) 0.147108 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0274553 (min) 0.281642 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.71296 (min) -0.266032 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.26819 (min) -0.317403 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 33.5596 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6985 (min) 14.5114 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1874 (min) 32.5378 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000137466 (min) 0.000218998 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:47 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:47 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:47 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:47 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:47 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:47 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:47 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
44:47 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 2 0 2]
44:47 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 0 3 0]
44:47 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 394.   0.]
 [  0.   0.   0.   0.   0.]
 [104.   0.   0. 363.   0.]
 [  3.   0. 659.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:47 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:47 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:47 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002219321763431977
44:47 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:47 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:47 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 35
44:47 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 35 elements
44:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:47 INFO    opendrift.models.chemicaldrift:1861: partitioning: [162, 0, 265, 73, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:47 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:47 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:47 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:47 INFO    opendrift.models.basemodel:1985: 2024-06-11 12:44:03.285310 - step 45 of 96 - 500 active elements (0 deactivated)
44:47 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:47 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:47 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.74660561796628
44:47 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.803849470405689
44:47 DEBUG   opendrift.models.basemodel:2014:               -28.206708908081055   <- z ->   -0.4111683038595705
44:47 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:47 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:47 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:47 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:47 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 12:00:00 (before)
                2024-06-11 13:00:00 (after)
44:47 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 12:00:00) in space  (linearNDFast)
44:47 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:47 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 13:00:00) in space  (linearNDFast)
44:47 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:47 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 12:00:00, weight 0.27) and
                      after (2024-06-11 13:00:00, weight 0.73) in time
44:47 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:47 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:47 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19616154611356 degrees.
44:47 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:47 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:47 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:47 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:47 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:47 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:47 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:47 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:47 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:47 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:47 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:47 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:47 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:47 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:47 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:47 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:47 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:47 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:47 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:47 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:47 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.126102 (min) 0.154044 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0506085 (min) 0.324591 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.4949 (min) 0.0661891 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.44966 (min) -0.310938 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 35.0669 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6965 (min) 14.6004 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1936 (min) 32.547 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000147903 (min) 0.000181411 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:47 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:47 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:47 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:47 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:47 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:47 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:47 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
44:47 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 2 2]
44:47 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 0 0]
44:47 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 398.   0.]
 [  0.   0.   0.   0.   0.]
 [107.   0.   0. 376.   0.]
 [  3.   0. 694.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:47 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:47 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:47 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0017258011821671563
44:47 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:47 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:47 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:47 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:47 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 70
44:47 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 70 elements
44:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:47 INFO    opendrift.models.chemicaldrift:1861: partitioning: [161, 0, 309, 30, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:47 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:47 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:47 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:47 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
44:47 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:47 INFO    opendrift.models.basemodel:1985: 2024-06-11 13:14:03.285310 - step 46 of 96 - 500 active elements (0 deactivated)
44:47 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:47 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:47 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.75006587810538
44:47 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.805398893514685
44:47 DEBUG   opendrift.models.basemodel:2014:               -27.257031783382303   <- z ->   -0.36029611900704617
44:47 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:47 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:47 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:47 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:47 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:47 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 13:00:00 (before)
                2024-06-11 14:00:00 (after)
44:49 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:49 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:49 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:49 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:49 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:49 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:49 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 50x36x7) for time after (2024-06-11 14:00:00)
44:49 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 13:00:00) in space  (linearNDFast)
44:49 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
/root/project/opendrift/readers/interpolation/interpolators.py:17: RuntimeWarning: overflow encountered in cast
  data[mask] = np.finfo(np.float64).min
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 14:00:00) in space  (linearNDFast)
44:49 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:49 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 13:00:00, weight 0.77) and
                      after (2024-06-11 14:00:00, weight 0.23) in time
44:49 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:49 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.194612120968266 degrees.
44:49 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.194612120968266 degrees.
44:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:49 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:49 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:49 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:49 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:49 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:49 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:49 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:49 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.186374 (min) 0.170834 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0665677 (min) 0.328364 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.42498 (min) 0.304237 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.5803 (min) -0.300379 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 36.5627 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6966 (min) 14.6176 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1966 (min) 32.5625 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000157257 (min) 0.000162278 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:49 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:49 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:49 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:49 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:49 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:49 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:49 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 10
44:49 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2 2 2 2 2 0]
44:49 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0 0 0 0 0 3]
44:49 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 400.   0.]
 [  0.   0.   0.   0.   0.]
 [115.   0.   0. 399.   0.]
 [  3.   0. 764.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:49 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:49 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:49 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0018691535402393493
44:49 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:49 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:49 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19
44:49 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements
44:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:49 INFO    opendrift.models.chemicaldrift:1861: partitioning: [167, 0, 301, 32, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:49 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:49 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:49 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:49 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:49 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:49 INFO    opendrift.models.basemodel:1985: 2024-06-11 13:44:03.285310 - step 47 of 96 - 500 active elements (0 deactivated)
44:49 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:49 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:49 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.75335904893174
44:49 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.8066968378222
44:49 DEBUG   opendrift.models.basemodel:2014:               -30.49037542867162   <- z ->   -0.32850183476378975
44:49 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:49 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 13:00:00 (before)
                2024-06-11 14:00:00 (after)
44:49 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 13:00:00) in space  (linearNDFast)
44:49 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:49 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 14:00:00) in space  (linearNDFast)
44:49 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:49 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 13:00:00, weight 0.27) and
                      after (2024-06-11 14:00:00, weight 0.73) in time
44:49 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:49 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.19331417179734 degrees.
44:49 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.19331417179734 degrees.
44:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:49 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:49 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:49 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:49 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:49 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:49 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:49 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:49 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:49 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:49 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:49 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.185421 (min) 0.179451 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0738688 (min) 0.306208 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.52349 (min) 0.485232 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.67959 (min) -0.201788 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 38.1366 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6868 (min) 14.7355 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.195 (min) 32.5757 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000194291 (min) 0.000192647 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:49 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:49 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:49 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:49 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:49 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:49 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
44:49 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 2 2 0 2 0]
44:49 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 0 0 3 0 3]
44:49 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 403.   0.]
 [  0.   0.   0.   0.   0.]
 [121.   0.   0. 418.   0.]
 [  3.   0. 783.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:49 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:49 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:49 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0022535155698726406
44:49 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:49 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:49 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:49 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:49 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 23
44:49 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:49 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 23 elements
44:49 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:49 INFO    opendrift.models.chemicaldrift:1861: partitioning: [170, 0, 300, 30, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:49 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:49 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:49 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:49 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:49 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:49 INFO    opendrift.models.basemodel:1985: 2024-06-11 14:14:03.285310 - step 48 of 96 - 500 active elements (0 deactivated)
44:49 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:49 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:49 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.75615426183026
44:49 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.8066968378222
44:49 DEBUG   opendrift.models.basemodel:2014:               -29.364166889786365   <- z ->   -0.3425243619689559
44:49 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:49 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:49 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:49 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:49 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:49 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 14:00:00 (before)
                2024-06-11 15:00:00 (after)
44:50 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:50 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:50 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:50 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:50 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:50 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:50 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 51x35x7) for time after (2024-06-11 15:00:00)
44:50 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 14:00:00) in space  (linearNDFast)
44:50 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:50 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 15:00:00) in space  (linearNDFast)
44:50 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:50 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 14:00:00, weight 0.77) and
                      after (2024-06-11 15:00:00, weight 0.23) in time
44:50 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:50 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.19331417179734 degrees.
44:50 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.19331417179734 degrees.
44:50 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:50 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:50 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:50 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:50 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:50 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:50 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:50 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:50 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:50 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:50 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:50 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:50 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:50 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:50 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:50 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:50 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:50 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:50 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:50 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:50 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.165675 (min) 0.178477 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0708136 (min) 0.266686 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.61966 (min) 0.571363 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.91582 (min) -0.347474 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 39.5166 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6897 (min) 14.7636 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.1975 (min) 32.6061 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000241703 (min) 0.000266186 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:50 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:50 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:50 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:50 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:50 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:50 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:50 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
44:50 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0]
44:50 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3]
44:50 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 408.   0.]
 [  0.   0.   0.   0.   0.]
 [122.   0.   0. 436.   0.]
 [  3.   0. 806.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:50 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:50 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:50 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:50 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:50 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002843807209424781
44:50 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:50 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:50 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 28
44:50 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:50 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 28 elements
44:50 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:50 INFO    opendrift.models.chemicaldrift:1861: partitioning: [166, 0, 296, 38, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:50 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:50 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:50 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:50 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:50 INFO    opendrift.models.basemodel:1985: 2024-06-11 14:44:03.285310 - step 49 of 96 - 500 active elements (0 deactivated)
44:50 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:50 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:50 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.758594107644946
44:50 DEBUG   opendrift.models.basemodel:2009:               10.53173640057646 <- longitude -> 10.80691711753297
44:50 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.29659716328178537
44:50 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:50 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:50 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:50 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:50 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 14:00:00 (before)
                2024-06-11 15:00:00 (after)
44:50 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 14:00:00) in space  (linearNDFast)
44:50 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:50 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 15:00:00) in space  (linearNDFast)
44:50 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:50 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 14:00:00, weight 0.27) and
                      after (2024-06-11 15:00:00, weight 0.73) in time
44:50 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:50 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19309389994344 degrees.
44:50 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.19309389994344 degrees.
44:50 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:50 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:50 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:50 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:50 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:50 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:50 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:50 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:50 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:50 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:50 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:50 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:50 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:50 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:50 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:50 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:50 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:50 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:50 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:50 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:50 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:50 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.177418 (min) 0.162379 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0559082 (min) 0.238726 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.68225 (min) 0.531977 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -2.14805 (min) -0.426201 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 40.809 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6963 (min) 14.8191 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2039 (min) 32.6568 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000321321 (min) 0.000296875 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:50 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:50 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
44:50 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:50 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:50 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:50 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:50 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
44:50 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2 2 2 2 0]
44:50 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0 0 0 0 3]
44:50 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 410.   0.]
 [  0.   0.   0.   0.   0.]
 [129.   0.   0. 467.   0.]
 [  3.   0. 834.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:50 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:50 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:50 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:50 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:50 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0034090798194021696
44:50 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:50 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:50 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:50 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:50 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:50 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:50 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:50 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:50 INFO    opendrift.models.chemicaldrift:1861: partitioning: [171, 0, 266, 63, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:50 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:50 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:50 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:50 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:50 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:50 INFO    opendrift.models.basemodel:1985: 2024-06-11 15:14:03.285310 - step 50 of 96 - 500 active elements (0 deactivated)
44:50 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:50 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:50 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.7601918959123
44:50 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.809105798784381
44:50 DEBUG   opendrift.models.basemodel:2014:               -29.178137538678627   <- z ->   -0.26153448614152935
44:50 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:50 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:50 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:50 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:50 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:50 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 15:00:00 (before)
                2024-06-11 16:00:00 (after)
44:52 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:52 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:52 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:52 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:52 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:52 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:52 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 51x35x7) for time after (2024-06-11 16:00:00)
44:52 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 15:00:00) in space  (linearNDFast)
44:52 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:52 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 16:00:00) in space  (linearNDFast)
44:52 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:52 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 15:00:00, weight 0.77) and
                      after (2024-06-11 16:00:00, weight 0.23) in time
44:52 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:52 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.190905213430526 degrees.
44:52 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.190905213430526 degrees.
44:52 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:52 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:52 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:52 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:52 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:52 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:52 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:52 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:52 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:52 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:52 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:52 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:52 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:52 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:52 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:52 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:52 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:52 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:52 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:52 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:52 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.188251 (min) 0.147405 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0383021 (min) 0.188153 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.91676 (min) 0.462003 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -2.22062 (min) -0.386897 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 41.4598 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.697 (min) 14.8238 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2046 (min) 32.7061 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000203783 (min) 0.000328854 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:52 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:52 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:52 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:52 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:52 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:52 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:52 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:52 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 2]
44:52 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 0]
44:52 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 414.   0.]
 [  0.   0.   0.   0.   0.]
 [130.   0.   0. 490.   0.]
 [  3.   0. 834.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:52 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:52 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:52 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0035734914677935303
44:52 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:52 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:52 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:52 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:52 INFO    opendrift.models.chemicaldrift:1861: partitioning: [168, 0, 249, 83, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:52 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:52 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:52 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:52 INFO    opendrift.models.basemodel:1985: 2024-06-11 15:44:03.285310 - step 51 of 96 - 500 active elements (0 deactivated)
44:52 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:52 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:52 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.76182702954609
44:52 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.8122757296925
44:52 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.4714878863593772
44:52 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:52 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:52 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:52 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 15:00:00 (before)
                2024-06-11 16:00:00 (after)
44:52 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 15:00:00) in space  (linearNDFast)
44:52 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:52 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 16:00:00) in space  (linearNDFast)
44:52 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:52 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 15:00:00, weight 0.27) and
                      after (2024-06-11 16:00:00, weight 0.73) in time
44:52 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:52 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.18773528038748 degrees.
44:52 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.18773528038748 degrees.
44:52 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:52 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:52 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:52 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:52 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:52 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:52 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:52 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:52 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:52 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:52 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:52 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:52 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:52 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:52 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:52 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:52 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:52 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:52 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:52 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:52 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:52 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.23438 (min) 0.140204 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0231601 (min) 0.152351 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.21476 (min) 0.404588 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -2.11759 (min) -0.307886 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 42.2515 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.7042 (min) 14.8333 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.231 (min) 32.9142 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000170568 (min) 0.000340639 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:52 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:52 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 8 elements to seafloor.
44:52 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:52 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:52 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:52 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:52 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
44:52 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2 0 0 2]
44:52 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0 3 3 0]
44:52 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 418.   0.]
 [  0.   0.   0.   0.   0.]
 [134.   0.   0. 506.   0.]
 [  3.   0. 834.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:52 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:52 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:52 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.003682479785169359
44:52 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:52 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:52 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:52 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:52 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:52 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
44:52 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:52 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
44:52 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:52 INFO    opendrift.models.chemicaldrift:1861: partitioning: [168, 0, 234, 98, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:52 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:52 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:52 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:52 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:52 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:52 INFO    opendrift.models.basemodel:1985: 2024-06-11 16:14:03.285310 - step 52 of 96 - 500 active elements (0 deactivated)
44:52 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:52 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:52 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.763107154871506
44:52 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.815700087433102
44:52 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.33121641037446986
44:52 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:52 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:52 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:52 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:52 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:52 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 16:00:00 (before)
                2024-06-11 17:00:00 (after)
44:54 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:54 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:54 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:54 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:54 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:54 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:54 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 52x35x7) for time after (2024-06-11 17:00:00)
44:54 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 16:00:00) in space  (linearNDFast)
44:54 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:54 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 17:00:00) in space  (linearNDFast)
44:54 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:54 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 16:00:00, weight 0.77) and
                      after (2024-06-11 17:00:00, weight 0.23) in time
44:54 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:54 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.184310917420774 degrees.
44:54 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.184310917420774 degrees.
44:54 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:54 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:54 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:54 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:54 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:54 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:54 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:54 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:54 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:54 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:54 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:54 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:54 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:54 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:54 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:54 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:54 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:54 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:54 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:54 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:54 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.256771 (min) 0.135152 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0182889 (min) 0.131257 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.3058 (min) 0.43946 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.92989 (min) -0.128509 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 42.9161 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6938 (min) 14.8751 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2624 (min) 33.0541 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000215342 (min) 0.000455643 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:54 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:54 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:54 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:54 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:54 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:54 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:54 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
44:54 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 2 0]
44:54 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 3]
44:54 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 422.   0.]
 [  0.   0.   0.   0.   0.]
 [136.   0.   0. 518.   0.]
 [  3.   0. 835.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:54 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:54 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:54 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:54 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:54 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004010414289234046
44:54 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:54 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:54 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
44:54 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:54 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
44:54 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:54 INFO    opendrift.models.chemicaldrift:1861: partitioning: [166, 0, 221, 113, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:54 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:54 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:54 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:54 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:54 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:54 INFO    opendrift.models.basemodel:1985: 2024-06-11 16:44:03.285310 - step 53 of 96 - 500 active elements (0 deactivated)
44:54 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:54 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:54 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.7640611689887
44:54 DEBUG   opendrift.models.basemodel:2009:               10.531736400576461 <- longitude -> 10.819597530906298
44:54 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.2221487425033356
44:54 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:54 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:54 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:54 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:54 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 16:00:00 (before)
                2024-06-11 17:00:00 (after)
44:54 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 16:00:00) in space  (linearNDFast)
44:54 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:54 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 17:00:00) in space  (linearNDFast)
44:54 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:54 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 16:00:00, weight 0.27) and
                      after (2024-06-11 17:00:00, weight 0.73) in time
44:54 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:54 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.18041347766471 degrees.
44:54 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.18041347766471 degrees.
44:54 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:54 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:54 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:54 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:54 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:54 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:54 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:54 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:54 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:54 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:54 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:54 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:54 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:54 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:54 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:54 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:54 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:54 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:54 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:54 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:54 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:54 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.245066 (min) 0.123657 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0451504 (min) 0.110574 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.16202 (min) 0.569511 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.66321 (min) -0.378768 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 43.4456 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6728 (min) 14.8824 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2777 (min) 33.0766 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000207153 (min) 0.000566072 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:54 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:54 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
44:54 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:54 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:54 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:54 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:54 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
44:54 DEBUG   opendrift.models.chemicaldrift:1452: old species: [3 2 2]
44:54 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
44:54 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 422.   0.]
 [  0.   0.   0.   0.   0.]
 [138.   0.   0. 530.   0.]
 [  4.   0. 836.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:54 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:54 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:54 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:54 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:54 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0035824045494847667
44:54 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:54 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:54 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:54 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:54 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:54 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:54 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:54 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:54 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:54 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:54 INFO    opendrift.models.chemicaldrift:1861: partitioning: [169, 0, 210, 121, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:54 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:54 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:54 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:54 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:54 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:54 INFO    opendrift.models.basemodel:1985: 2024-06-11 17:14:03.285310 - step 54 of 96 - 500 active elements (0 deactivated)
44:54 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:54 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:54 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.76458726989493
44:54 DEBUG   opendrift.models.basemodel:2009:               10.531736400576461 <- longitude -> 10.823091924410575
44:54 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.3234241016051862
44:54 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:54 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:54 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:54 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:54 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:54 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 17:00:00 (before)
                2024-06-11 18:00:00 (after)
44:55 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:55 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:55 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:55 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:55 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:55 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:55 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 52x36x7) for time after (2024-06-11 18:00:00)
44:55 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 17:00:00) in space  (linearNDFast)
44:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:55 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 18:00:00) in space  (linearNDFast)
44:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:55 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 17:00:00, weight 0.77) and
                      after (2024-06-11 18:00:00, weight 0.23) in time
44:55 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.17691909621557 degrees.
44:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.17691909621557 degrees.
44:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:55 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:55 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:55 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:55 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.237889 (min) 0.107856 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0699932 (min) 0.112591 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -2.05302 (min) 0.539157 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -1.25733 (min) -0.226473 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 43.8075 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.657 (min) 14.9402 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2819 (min) 33.0942 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000144099 (min) 0.000627487 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:55 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:55 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:55 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:55 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:55 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:55 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:55 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
44:55 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0]
44:55 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3]
44:55 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 424.   0.]
 [  0.   0.   0.   0.   0.]
 [139.   0.   0. 539.   0.]
 [  4.   0. 836.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:55 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:55 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:55 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.00310152951595436
44:55 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:55 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:55 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:55 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:55 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:55 INFO    opendrift.models.chemicaldrift:1861: partitioning: [168, 0, 201, 131, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:55 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:55 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:55 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:55 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:55 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:55 INFO    opendrift.models.basemodel:1985: 2024-06-11 17:44:03.285310 - step 55 of 96 - 500 active elements (0 deactivated)
44:55 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:55 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:55 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.76523045555646
44:55 DEBUG   opendrift.models.basemodel:2009:               10.531736400576461 <- longitude -> 10.826074604192634
44:55 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.37857876112778666
44:55 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 17:00:00 (before)
                2024-06-11 18:00:00 (after)
44:55 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 17:00:00) in space  (linearNDFast)
44:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:55 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 18:00:00) in space  (linearNDFast)
44:55 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:55 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 17:00:00, weight 0.27) and
                      after (2024-06-11 18:00:00, weight 0.73) in time
44:55 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.173936412447425 degrees.
44:55 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.173936412447425 degrees.
44:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:55 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:55 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:55 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:55 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:55 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:55 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:55 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:55 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:55 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.235643 (min) 0.0898293 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0805574 (min) 0.126134 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.98348 (min) 0.331965 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.656713 (min) 0.382522 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 44.1928 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6606 (min) 14.9448 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2857 (min) 33.1237 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000138204 (min) 0.000699973 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:55 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:55 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 7 elements to seafloor.
44:55 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:55 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:55 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:55 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:55 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
44:55 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 3]
44:55 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0]
44:55 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 425.   0.]
 [  0.   0.   0.   0.   0.]
 [139.   0.   0. 547.   0.]
 [  5.   0. 836.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:55 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:55 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:55 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0029312970254821253
44:55 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:55 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:55 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:55 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:55 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:55 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:55 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:55 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:55 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:55 INFO    opendrift.models.chemicaldrift:1861: partitioning: [168, 0, 196, 136, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:55 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:55 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:55 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:55 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:55 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:55 INFO    opendrift.models.basemodel:1985: 2024-06-11 18:14:03.285310 - step 56 of 96 - 500 active elements (0 deactivated)
44:55 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:55 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:55 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.7658344263608
44:55 DEBUG   opendrift.models.basemodel:2009:               10.531736400576461 <- longitude -> 10.82825735682519
44:55 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.40190617976727855
44:55 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:55 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:55 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:55 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:55 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:55 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 18:00:00 (before)
                2024-06-11 19:00:00 (after)
44:57 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:57 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:57 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:57 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:57 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:57 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:57 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 52x36x7) for time after (2024-06-11 19:00:00)
44:57 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 18:00:00) in space  (linearNDFast)
44:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:57 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 19:00:00) in space  (linearNDFast)
44:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:57 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 18:00:00, weight 0.77) and
                      after (2024-06-11 19:00:00, weight 0.23) in time
44:57 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.171753652318834 degrees.
44:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.171753652318834 degrees.
44:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:57 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:57 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:57 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:57 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.240552 (min) 0.086884 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0774363 (min) 0.143448 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.87244 (min) 0.233603 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.33675 (min) 1.0144 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 44.564 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.637 (min) 14.9651 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2846 (min) 33.1605 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00011884 (min) 0.000573901 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:57 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:57 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:57 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:57 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:57 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:57 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:57 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
44:57 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2]
44:57 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0]
44:57 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 426.   0.]
 [  0.   0.   0.   0.   0.]
 [140.   0.   0. 552.   0.]
 [  5.   0. 836.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:57 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:57 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:57 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0032181438425476667
44:57 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:57 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:57 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0
44:57 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:57 INFO    opendrift.models.chemicaldrift:1861: partitioning: [168, 0, 186, 146, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:57 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:57 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:57 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:57 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:57 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:57 INFO    opendrift.models.basemodel:1985: 2024-06-11 18:44:03.285310 - step 57 of 96 - 500 active elements (0 deactivated)
44:57 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:57 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:57 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.7665915065148
44:57 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.829674607564542
44:57 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.40536602852298714
44:57 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 18:00:00 (before)
                2024-06-11 19:00:00 (after)
44:57 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 18:00:00) in space  (linearNDFast)
44:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:57 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 19:00:00) in space  (linearNDFast)
44:57 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:57 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 18:00:00, weight 0.27) and
                      after (2024-06-11 19:00:00, weight 0.73) in time
44:57 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.170336417334994 degrees.
44:57 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.170336417334994 degrees.
44:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:57 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:57 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:57 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:57 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:57 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:57 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:57 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:57 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:57 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.253251 (min) 0.0881782 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0618311 (min) 0.173783 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.66646 (min) 0.26136 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.305848 (min) 1.67223 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 45.0222 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6076 (min) 14.9684 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2871 (min) 33.197 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000156813 (min) 0.000487336 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:57 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:57 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
44:57 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:57 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:57 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:57 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:57 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
44:57 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0]
44:57 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3]
44:57 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 427.   0.]
 [  0.   0.   0.   0.   0.]
 [142.   0.   0. 561.   0.]
 [  5.   0. 836.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:57 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:57 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:57 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.003585658969494274
44:57 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:57 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:57 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:57 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:57 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
44:57 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:57 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
44:57 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:57 INFO    opendrift.models.chemicaldrift:1861: partitioning: [169, 0, 181, 150, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:57 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:57 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:57 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:57 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:57 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:57 INFO    opendrift.models.basemodel:1985: 2024-06-11 19:14:03.285310 - step 58 of 96 - 500 active elements (0 deactivated)
44:57 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:57 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:57 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.76761644198567
44:57 DEBUG   opendrift.models.basemodel:2009:               10.531736400576454 <- longitude -> 10.8303071161194
44:57 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.4476653883628829
44:57 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:57 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:57 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:57 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:57 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:57 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 19:00:00 (before)
                2024-06-11 20:00:00 (after)
44:58 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
44:58 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
44:58 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
44:58 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
44:58 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
44:58 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
44:58 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 52x37x7) for time after (2024-06-11 20:00:00)
44:58 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 19:00:00) in space  (linearNDFast)
44:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:58 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 20:00:00) in space  (linearNDFast)
44:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:58 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 19:00:00, weight 0.77) and
                      after (2024-06-11 20:00:00, weight 0.23) in time
44:58 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.16970389161653 degrees.
44:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.16970389161653 degrees.
44:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:58 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:58 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:58 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:58 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.263867 (min) 0.0779687 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0412316 (min) 0.214432 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.23332 (min) 0.29974 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.248823 (min) 2.00964 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 45.6431 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5952 (min) 14.9569 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2955 (min) 33.217 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000234771 (min) 0.000447406 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:58 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:58 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
44:58 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:58 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:58 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:58 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:58 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:58 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2]
44:58 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0]
44:58 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 427.   0.]
 [  0.   0.   0.   0.   0.]
 [147.   0.   0. 566.   0.]
 [  5.   0. 838.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:58 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:58 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:58 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0036008990726346004
44:58 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:58 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:58 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
44:58 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
44:58 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
44:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:58 INFO    opendrift.models.chemicaldrift:1861: partitioning: [174, 0, 167, 159, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:58 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:58 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:58 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:58 INFO    opendrift.models.basemodel:1985: 2024-06-11 19:44:03.285310 - step 59 of 96 - 500 active elements (0 deactivated)
44:58 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:58 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:58 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.7689958934318
44:58 DEBUG   opendrift.models.basemodel:2009:               10.531736400576458 <- longitude -> 10.830265022221736
44:58 DEBUG   opendrift.models.basemodel:2014:               -29.014156341552734   <- z ->   -0.37665100688391445
44:58 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:58 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 19:00:00 (before)
                2024-06-11 20:00:00 (after)
44:58 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 19:00:00) in space  (linearNDFast)
44:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 20:00:00) in space  (linearNDFast)
44:58 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
44:58 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 19:00:00, weight 0.27) and
                      after (2024-06-11 20:00:00, weight 0.73) in time
44:58 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
44:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.16974599610529 degrees.
44:58 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.16974599610529 degrees.
44:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
44:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
44:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
44:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
44:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
44:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
44:58 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
44:58 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
44:58 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
44:58 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
44:58 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
44:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
44:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
44:58 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
44:58 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
44:58 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
44:58 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.280201 (min) 0.073742 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0141814 (min) 0.259228 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.709461 (min) 0.339502 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.0443382 (min) 1.98352 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 46.4876 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5865 (min) 14.9635 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2983 (min) 33.2076 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000280877 (min) 0.000391123 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
44:58 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
44:58 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
44:58 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
44:58 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
44:58 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
44:58 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
44:58 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
44:58 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2]
44:58 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0]
44:58 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 428.   0.]
 [  0.   0.   0.   0.   0.]
 [151.   0.   0. 579.   0.]
 [  5.   0. 842.   0.   0.]
 [  0.   0.   0.   0.   0.]]
44:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
44:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:58 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
44:58 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
44:58 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0029929562480081797
44:58 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
44:58 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
44:58 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
44:58 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 27
44:58 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
44:58 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 27 elements
44:58 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
44:58 INFO    opendrift.models.chemicaldrift:1861: partitioning: [177, 0, 181, 142, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
44:58 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
44:58 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
44:58 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
44:58 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
44:58 DEBUG   opendrift.models.basemodel:1984: ======================================================================
44:58 INFO    opendrift.models.basemodel:1985: 2024-06-11 20:14:03.285310 - step 60 of 96 - 500 active elements (0 deactivated)
44:58 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
44:58 DEBUG   opendrift.models.basemodel:1993: ======================================================================
44:58 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.77069903793967
44:58 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.829629676181412
44:58 DEBUG   opendrift.models.basemodel:2014:               -29.482166282861616   <- z ->   -0.42437902957363893
44:58 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
44:58 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
44:58 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
44:58 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
44:58 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
44:58 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 20:00:00 (before)
                2024-06-11 21:00:00 (after)
45:00 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:00 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:00 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:00 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:00 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:00 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:00 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 52x38x7) for time after (2024-06-11 21:00:00)
45:00 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 20:00:00) in space  (linearNDFast)
45:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:00 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 21:00:00) in space  (linearNDFast)
45:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:00 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:00 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 20:00:00, weight 0.77) and
                      after (2024-06-11 21:00:00, weight 0.23) in time
45:00 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17038133524227 degrees.
45:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17038133524227 degrees.
45:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:00 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:00 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:00 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:00 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.298745 (min) 0.081916 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0112421 (min) 0.289128 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.306187 (min) 0.395863 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.0464753 (min) 1.93303 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 47.5594 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5717 (min) 14.9425 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3034 (min) 33.2225 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000339966 (min) 0.000334101 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:00 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:00 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:00 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:00 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:00 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:00 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:00 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:00 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2]
45:00 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0]
45:00 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 429.   0.]
 [  0.   0.   0.   0.   0.]
 [154.   0.   0. 588.   0.]
 [  5.   0. 869.   0.   0.]
 [  0.   0.   0.   0.   0.]]
45:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:00 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:00 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:00 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0027081193646240134
45:00 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:00 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:00 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 52
45:00 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 52 elements
45:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:00 INFO    opendrift.models.chemicaldrift:1861: partitioning: [179, 0, 216, 105, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:00 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:00 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:00 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:00 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:00 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:00 INFO    opendrift.models.basemodel:1985: 2024-06-11 20:44:03.285310 - step 61 of 96 - 500 active elements (0 deactivated)
45:00 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:00 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:00 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.772999124191784
45:00 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.828528684830435
45:00 DEBUG   opendrift.models.basemodel:2014:               -30.38660356721276   <- z ->   -0.4598732782404027
45:00 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 20:00:00 (before)
                2024-06-11 21:00:00 (after)
45:00 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 20:00:00) in space  (linearNDFast)
45:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:00 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 21:00:00) in space  (linearNDFast)
45:00 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:00 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 20:00:00, weight 0.27) and
                      after (2024-06-11 21:00:00, weight 0.73) in time
45:00 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.171482317935414 degrees.
45:00 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.171482317935414 degrees.
45:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:00 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:00 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:00 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:00 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:00 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:00 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:00 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:00 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:00 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.30632 (min) 0.104598 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: 0.0149576 (min) 0.317393 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.196661 (min) 0.472484 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.0353892 (min) 1.78821 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 48.8966 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5697 (min) 14.9172 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3037 (min) 33.2315 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000452738 (min) 0.000275459 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:00 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:00 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:00 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:00 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:00 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:00 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:00 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0]
45:00 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3]
45:00 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[  0.   0.   0. 430.   0.]
 [  0.   0.   0.   0.   0.]
 [157.   0.   0. 602.   0.]
 [  5.   0. 921.   0.   0.]
 [  0.   0.   0.   0.   0.]]
45:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:00 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:00 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:00 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002320107945029555
45:00 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:00 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:00 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:00 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:00 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 80
45:00 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:00 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 80 elements
45:00 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:00 INFO    opendrift.models.chemicaldrift:1861: partitioning: [181, 0, 269, 50, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:00 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:00 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:00 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:00 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:00 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:00 INFO    opendrift.models.basemodel:1985: 2024-06-11 21:14:03.285310 - step 62 of 96 - 500 active elements (0 deactivated)
45:00 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:00 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:00 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.77568700541114
45:00 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.827884611209695
45:00 DEBUG   opendrift.models.basemodel:2014:               -31.037510110318372   <- z ->   -0.4731390895597773
45:00 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:00 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:00 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:00 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:00 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:00 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 21:00:00 (before)
                2024-06-11 22:00:00 (after)
45:04 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:04 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:04 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:04 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:04 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:04 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:04 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 53x39x7) for time after (2024-06-11 22:00:00)
45:04 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 21:00:00) in space  (linearNDFast)
45:04 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:04 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 22:00:00) in space  (linearNDFast)
45:04 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:04 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 21:00:00, weight 0.77) and
                      after (2024-06-11 22:00:00, weight 0.23) in time
45:04 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:04 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17212640020442 degrees.
45:04 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17212640020442 degrees.
45:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:04 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:04 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:04 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:04 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:04 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:04 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:04 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:04 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:04 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:04 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:04 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:04 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:04 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:04 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:04 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:04 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:04 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:04 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:04 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:04 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:04 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:04 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:04 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:04 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:04 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:04 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:04 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.304143 (min) 0.127496 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0138188 (min) 0.323281 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.427738 (min) 0.444505 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.0362777 (min) 1.58032 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 50.497 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5666 (min) 14.8902 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3058 (min) 33.2311 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000364961 (min) 0.000228969 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:04 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:04 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:04 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:04 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:04 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:04 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
45:04 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
45:04 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
45:04 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  430.    0.]
 [   0.    0.    0.    0.    0.]
 [ 160.    0.    0.  626.    0.]
 [   5.    0. 1001.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:04 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:04 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:04 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:04 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:04 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0019407980003198306
45:04 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:04 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:04 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:04 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 6 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
45:04 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:04 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:04 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 33
45:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 33 elements
45:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [184, 0, 268, 48, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:05 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:05 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:05 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:05 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:05 INFO    opendrift.models.basemodel:1985: 2024-06-11 21:44:03.285310 - step 63 of 96 - 500 active elements (0 deactivated)
45:05 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:05 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:05 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.778171280102896
45:05 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.827046965828448
45:05 DEBUG   opendrift.models.basemodel:2014:               -31.454988242748094   <- z ->   -0.4710194547223296
45:05 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 21:00:00 (before)
                2024-06-11 22:00:00 (after)
45:05 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 21:00:00) in space  (linearNDFast)
45:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:05 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 22:00:00) in space  (linearNDFast)
45:05 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:05 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 21:00:00, weight 0.27) and
                      after (2024-06-11 22:00:00, weight 0.73) in time
45:05 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17296404586903 degrees.
45:05 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17296404586903 degrees.
45:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:05 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:05 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:05 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:05 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:05 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:05 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:05 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:05 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:05 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.30837 (min) 0.131834 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.044809 (min) 0.339018 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.90296 (min) 0.315379 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.0869958 (min) 1.52992 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 52.6729 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5841 (min) 14.8617 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3088 (min) 33.2565 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000381389 (min) 0.000380809 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:05 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:05 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:05 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:05 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:05 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:05 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:05 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:05 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
45:05 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
45:05 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
45:05 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  430.    0.]
 [   0.    0.    0.    0.    0.]
 [ 163.    0.    0.  657.    0.]
 [   5.    0. 1034.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:05 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:05 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:05 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0022844820966971225
45:05 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:05 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:05 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:05 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 5 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 5 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:05 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:05 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:05 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 41
45:05 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:05 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 41 elements
45:05 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:05 INFO    opendrift.models.chemicaldrift:1861: partitioning: [187, 0, 267, 46, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:05 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:05 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:05 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:05 DEBUG   opendrift.models.basemodel:704: Lifting 7 elements to seafloor.
45:05 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:05 INFO    opendrift.models.basemodel:1985: 2024-06-11 22:14:03.285310 - step 64 of 96 - 500 active elements (0 deactivated)
45:05 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:05 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:05 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.78029050555881
45:05 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.826032672697965
45:05 DEBUG   opendrift.models.basemodel:2014:               -31.782876996274794   <- z ->   -0.45193754767334493
45:05 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:05 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:05 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:05 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:05 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:05 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 22:00:00 (before)
                2024-06-11 23:00:00 (after)
45:06 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:06 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:06 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:06 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:06 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:06 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:06 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 53x40x7) for time after (2024-06-11 23:00:00)
45:06 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 22:00:00) in space  (linearNDFast)
45:06 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:06 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 23:00:00) in space  (linearNDFast)
45:06 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:06 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 22:00:00, weight 0.77) and
                      after (2024-06-11 23:00:00, weight 0.23) in time
45:06 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:06 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17397835132284 degrees.
45:06 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17397835132284 degrees.
45:06 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:06 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:06 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:06 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:06 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:06 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:06 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:06 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:06 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:06 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:06 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:06 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:06 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:06 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:06 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:06 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:06 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:06 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:06 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:06 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:06 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.325574 (min) 0.153136 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0701988 (min) 0.358848 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.11757 (min) 0.172843 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.176274 (min) 1.44884 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 55.7832 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5958 (min) 14.8258 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3117 (min) 33.2811 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000441067 (min) 0.00046723 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:06 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:06 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:06 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:06 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:06 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:06 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:06 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
45:06 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2]
45:06 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0]
45:06 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  431.    0.]
 [   0.    0.    0.    0.    0.]
 [ 165.    0.    0.  696.    0.]
 [   5.    0. 1075.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:06 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:06 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:06 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002423311166208403
45:06 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:06 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:06 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:06 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 38
45:06 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 38 elements
45:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:06 INFO    opendrift.models.chemicaldrift:1861: partitioning: [188, 0, 267, 45, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:06 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:06 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:06 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 8 elements to seafloor.
45:06 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:06 INFO    opendrift.models.basemodel:1985: 2024-06-11 22:44:03.285310 - step 65 of 96 - 500 active elements (0 deactivated)
45:06 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:06 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:06 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.783002594684575
45:06 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.82490886592867
45:06 DEBUG   opendrift.models.basemodel:2014:               -32.83140194162307   <- z ->   -0.48306954563437193
45:06 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:06 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:06 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:06 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:06 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 22:00:00 (before)
                2024-06-11 23:00:00 (after)
45:06 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 22:00:00) in space  (linearNDFast)
45:06 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:06 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-11 23:00:00) in space  (linearNDFast)
45:06 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:06 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 22:00:00, weight 0.27) and
                      after (2024-06-11 23:00:00, weight 0.73) in time
45:06 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:06 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.17510215509001 degrees.
45:06 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.46827468327247 and -59.17510215509001 degrees.
45:06 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:06 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:06 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:06 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:06 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:06 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:06 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:06 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:06 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:06 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:06 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:06 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:06 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:06 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:06 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:06 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:06 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:06 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:06 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:06 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:06 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:06 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.334566 (min) 0.159618 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.0864541 (min) 0.364495 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.11395 (min) -0.00283454 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.449374 (min) 1.61333 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 59.2731 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5582 (min) 14.794 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3137 (min) 33.3067 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000484796 (min) 0.000496076 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:06 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:06 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:06 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:06 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:06 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:06 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:06 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0]
45:06 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3]
45:06 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  432.    0.]
 [   0.    0.    0.    0.    0.]
 [ 169.    0.    0.  732.    0.]
 [   5.    0. 1113.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:06 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:06 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:06 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002064207354656902
45:06 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:06 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:06 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:06 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:06 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:06 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 38
45:06 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:06 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 38 elements
45:06 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:06 INFO    opendrift.models.chemicaldrift:1861: partitioning: [191, 0, 269, 40, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:06 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:06 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:06 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:06 DEBUG   opendrift.models.basemodel:704: Lifting 10 elements to seafloor.
45:06 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:06 INFO    opendrift.models.basemodel:1985: 2024-06-11 23:14:03.285310 - step 66 of 96 - 500 active elements (0 deactivated)
45:06 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:06 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:06 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.78615481569062
45:06 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.823788392864742
45:06 DEBUG   opendrift.models.basemodel:2014:               -31.740027438359668   <- z ->   -0.418728295511614
45:06 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:06 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:06 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:06 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:06 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:06 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 23:00:00 (before)
                2024-06-12 00:00:00 (after)
45:09 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:09 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:09 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:09 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:09 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:09 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:09 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 54x42x7) for time after (2024-06-12 00:00:00)
45:09 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 23:00:00) in space  (linearNDFast)
45:09 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:09 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 00:00:00) in space  (linearNDFast)
45:09 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:09 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 23:00:00, weight 0.77) and
                      after (2024-06-12 00:00:00, weight 0.23) in time
45:09 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.1762226289615 degrees.
45:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.1762226289615 degrees.
45:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:10 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:10 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:10 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:10 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.35348 (min) 0.184491 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.100733 (min) 0.358912 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.17187 (min) -0.00289175 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.552057 (min) 1.7781 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 64.2581 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.6036 (min) 14.7723 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3104 (min) 33.3126 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000549673 (min) 0.000667059 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:10 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:10 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:10 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:10 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0]
45:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3]
45:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  435.    0.]
 [   0.    0.    0.    0.    0.]
 [ 170.    0.    0.  764.    0.]
 [   5.    0. 1151.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:10 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:10 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002336744344177757
45:10 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:10 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:10 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:10 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 39
45:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 39 elements
45:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [189, 0, 272, 39, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:10 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:10 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:10 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:10 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:10 INFO    opendrift.models.basemodel:1985: 2024-06-11 23:44:03.285310 - step 67 of 96 - 500 active elements (0 deactivated)
45:10 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:10 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:10 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.79038618460546
45:10 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.822775572363014
45:10 DEBUG   opendrift.models.basemodel:2014:               -31.41022258082777   <- z ->   -0.35133082310983765
45:10 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-11 23:00:00 (before)
                2024-06-12 00:00:00 (after)
45:10 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-11 23:00:00) in space  (linearNDFast)
45:10 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:10 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 00:00:00) in space  (linearNDFast)
45:10 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:10 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-11 23:00:00, weight 0.27) and
                      after (2024-06-12 00:00:00, weight 0.73) in time
45:10 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.177235452253 degrees.
45:10 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.177235452253 degrees.
45:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:10 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:10 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:10 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:10 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:10 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:10 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:10 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:10 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:10 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.361098 (min) 0.212346 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.10953 (min) 0.35844 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.28234 (min) 0.19804 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.596044 (min) 1.2704 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 69.7803 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5882 (min) 14.7473 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3201 (min) 33.3264 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000549595 (min) 0.000663417 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:10 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:10 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:10 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:10 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:10 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:10 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
45:10 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
45:10 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
45:10 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  435.    0.]
 [   0.    0.    0.    0.    0.]
 [ 173.    0.    0.  799.    0.]
 [   5.    0. 1190.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:10 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:10 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:10 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0016412056794371367
45:10 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:10 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:10 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:10 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:10 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:10 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 42
45:10 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:10 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 42 elements
45:10 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:10 INFO    opendrift.models.chemicaldrift:1861: partitioning: [192, 0, 288, 20, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:10 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:10 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:10 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:10 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
45:10 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:10 INFO    opendrift.models.basemodel:1985: 2024-06-12 00:14:03.285310 - step 68 of 96 - 500 active elements (0 deactivated)
45:10 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:10 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:10 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.79498439819378
45:10 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.821970811837275
45:10 DEBUG   opendrift.models.basemodel:2014:               -31.40728446698332   <- z ->   -0.47538350745635904
45:10 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:10 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:10 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:10 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:10 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:10 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 00:00:00 (before)
                2024-06-12 01:00:00 (after)
45:11 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:11 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:11 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:11 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:11 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:11 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:11 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 55x43x7) for time after (2024-06-12 01:00:00)
45:11 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 00:00:00) in space  (linearNDFast)
45:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:11 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 01:00:00) in space  (linearNDFast)
45:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:11 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 00:00:00, weight 0.77) and
                      after (2024-06-12 01:00:00, weight 0.23) in time
45:11 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.1780402012008 degrees.
45:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.1780402012008 degrees.
45:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:11 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:11 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:11 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:11 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.371183 (min) 0.200189 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.118361 (min) 0.365734 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.35429 (min) 0.264167 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.446364 (min) 1.07015 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 75.0322 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5694 (min) 14.7134 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3277 (min) 33.3426 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000691244 (min) 0.000775986 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:11 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:11 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:11 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:11 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:11 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:11 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:11 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:11 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2]
45:11 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0]
45:11 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  435.    0.]
 [   0.    0.    0.    0.    0.]
 [ 178.    0.    0.  822.    0.]
 [   5.    0. 1232.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:11 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:11 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:11 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0017501131272669973
45:11 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:11 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:11 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:11 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 28
45:11 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 28 elements
45:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:11 INFO    opendrift.models.chemicaldrift:1861: partitioning: [197, 0, 287, 16, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:11 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:11 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:11 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 10 elements to seafloor.
45:11 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:11 INFO    opendrift.models.basemodel:1985: 2024-06-12 00:44:03.285310 - step 69 of 96 - 500 active elements (0 deactivated)
45:11 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:11 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:11 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.79960769857701
45:11 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.821500591077323
45:11 DEBUG   opendrift.models.basemodel:2014:               -30.994745284305854   <- z ->   -0.4451599428041778
45:11 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 00:00:00 (before)
                2024-06-12 01:00:00 (after)
45:11 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 00:00:00) in space  (linearNDFast)
45:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:11 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 01:00:00) in space  (linearNDFast)
45:11 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:11 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 00:00:00, weight 0.27) and
                      after (2024-06-12 01:00:00, weight 0.73) in time
45:11 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.178510407151435 degrees.
45:11 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.178510407151435 degrees.
45:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:11 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:11 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:11 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:11 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:11 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:11 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:11 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:11 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:11 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.380018 (min) 0.174698 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.131088 (min) 0.359152 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.35701 (min) 0.225167 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.59663 (min) 1.13009 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 79.8383 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5378 (min) 14.6783 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.328 (min) 33.3482 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000708221 (min) 0.000958504 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:11 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:11 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:11 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:11 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:11 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:11 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:11 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:11 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
45:11 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2 2 2]
45:11 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0 0 0]
45:11 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  437.    0.]
 [   0.    0.    0.    0.    0.]
 [ 183.    0.    0.  846.    0.]
 [   5.    0. 1260.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:11 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:11 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:11 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002115780500931374
45:11 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:11 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:11 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:11 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:11 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:11 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:11 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 30
45:11 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:11 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 30 elements
45:11 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:11 INFO    opendrift.models.chemicaldrift:1861: partitioning: [200, 0, 291, 9, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:11 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:11 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:11 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:11 DEBUG   opendrift.models.basemodel:704: Lifting 21 elements to seafloor.
45:11 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:11 INFO    opendrift.models.basemodel:1985: 2024-06-12 01:14:03.285310 - step 70 of 96 - 500 active elements (0 deactivated)
45:11 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:11 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:11 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.80414052404433
45:11 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.821513016071611
45:11 DEBUG   opendrift.models.basemodel:2014:               -32.007606506347656   <- z ->   -0.4334793021529205
45:11 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:11 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:11 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:11 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:11 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:11 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 01:00:00 (before)
                2024-06-12 02:00:00 (after)
45:13 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:13 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:13 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:13 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:13 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:13 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:13 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 56x44x7) for time after (2024-06-12 02:00:00)
45:13 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 01:00:00) in space  (linearNDFast)
45:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:13 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 02:00:00) in space  (linearNDFast)
45:13 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:13 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 01:00:00, weight 0.77) and
                      after (2024-06-12 02:00:00, weight 0.23) in time
45:13 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.1784979983184 degrees.
45:13 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.1784979983184 degrees.
45:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:13 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:13 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:13 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:13 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:13 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:13 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:13 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:13 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:13 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:13 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:13 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:13 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:13 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:13 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:13 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:13 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:13 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.378857 (min) 0.198461 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.146731 (min) 0.354418 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.22921 (min) 0.0133109 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.76939 (min) 1.32773 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 83.8406 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.5236 (min) 14.6457 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3358 (min) 33.3619 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000712751 (min) 0.00099622 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:13 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:13 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:14 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:14 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:14 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0]
45:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3]
45:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  438.    0.]
 [   0.    0.    0.    0.    0.]
 [ 187.    0.    0.  867.    0.]
 [   5.    0. 1290.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:14 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:14 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002133259576194317
45:14 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:14 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:14 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 29
45:14 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 29 elements
45:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:14 INFO    opendrift.models.chemicaldrift:1861: partitioning: [203, 0, 290, 7, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:14 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:14 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:14 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 12 elements to seafloor.
45:14 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:14 INFO    opendrift.models.basemodel:1985: 2024-06-12 01:44:03.285310 - step 71 of 96 - 500 active elements (0 deactivated)
45:14 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:14 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:14 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.808664059899264
45:14 DEBUG   opendrift.models.basemodel:2009:               10.531736400576456 <- longitude -> 10.822036364086937
45:14 DEBUG   opendrift.models.basemodel:2014:               -32.49727137791305   <- z ->   -0.2520174791464014
45:14 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 01:00:00 (before)
                2024-06-12 02:00:00 (after)
45:14 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 01:00:00) in space  (linearNDFast)
45:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:14 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 02:00:00) in space  (linearNDFast)
45:14 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:14 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 01:00:00, weight 0.27) and
                      after (2024-06-12 02:00:00, weight 0.73) in time
45:14 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17797464715863 degrees.
45:14 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.468274683272476 and -59.17797464715863 degrees.
45:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:14 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:14 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:14 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:14 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:14 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:14 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:14 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:14 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:14 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.375266 (min) 0.204949 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.159477 (min) 0.317108 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.336 (min) -0.32475 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.951778 (min) 1.5979 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 87.394 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4827 (min) 14.6229 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3375 (min) 33.3779 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000679663 (min) 0.00105412 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:14 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:14 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:14 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:14 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:14 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:14 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:14 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:14 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:14 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2]
45:14 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0]
45:14 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  439.    0.]
 [   0.    0.    0.    0.    0.]
 [ 191.    0.    0.  893.    0.]
 [   5.    0. 1319.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:14 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:14 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:14 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0025823260687463136
45:14 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:14 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:14 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:14 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:14 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:14 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21
45:14 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:14 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements
45:14 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:14 INFO    opendrift.models.chemicaldrift:1861: partitioning: [206, 0, 287, 7, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:14 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:14 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:14 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:14 DEBUG   opendrift.models.basemodel:704: Lifting 10 elements to seafloor.
45:14 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:14 INFO    opendrift.models.basemodel:1985: 2024-06-12 02:14:03.285310 - step 72 of 96 - 500 active elements (0 deactivated)
45:14 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:14 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:14 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.81326630195157
45:14 DEBUG   opendrift.models.basemodel:2009:               10.525021816127623 <- longitude -> 10.823095439517166
45:14 DEBUG   opendrift.models.basemodel:2014:               -33.42701700173694   <- z ->   -0.36764864729035457
45:14 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:14 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:14 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:14 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:14 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:14 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 02:00:00 (before)
                2024-06-12 03:00:00 (after)
45:15 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:15 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:15 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:15 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:15 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:15 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:15 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 57x44x7) for time after (2024-06-12 03:00:00)
45:15 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 02:00:00) in space  (linearNDFast)
45:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:15 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 03:00:00) in space  (linearNDFast)
45:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:15 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 02:00:00, weight 0.77) and
                      after (2024-06-12 03:00:00, weight 0.23) in time
45:15 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47498922734276 and -59.17691557784999 degrees.
45:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.47498922734276 and -59.17691557784999 degrees.
45:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:15 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:15 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:15 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:15 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.355498 (min) 0.183621 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.169589 (min) 0.323555 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.37481 (min) 0.521914 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.02404 (min) 1.78292 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 90.6142 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.4307 (min) 14.6071 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3511 (min) 33.3893 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000549349 (min) 0.00119622 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:15 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:15 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
45:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
45:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
45:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  439.    0.]
 [   0.    0.    0.    0.    0.]
 [ 194.    0.    0.  913.    0.]
 [   5.    0. 1340.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:15 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:15 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0028542619978491135
45:15 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:15 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:15 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17
45:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements
45:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [209, 0, 284, 7, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:15 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:15 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:15 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 11 elements to seafloor.
45:15 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:15 INFO    opendrift.models.basemodel:1985: 2024-06-12 02:44:03.285310 - step 73 of 96 - 500 active elements (0 deactivated)
45:15 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:15 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:15 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.81782375602056
45:15 DEBUG   opendrift.models.basemodel:2009:               10.514274958384144 <- longitude -> 10.824679592070156
45:15 DEBUG   opendrift.models.basemodel:2014:               -33.24669287451358   <- z ->   -0.15615888283452117
45:15 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 02:00:00 (before)
                2024-06-12 03:00:00 (after)
45:15 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 02:00:00) in space  (linearNDFast)
45:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:15 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 03:00:00) in space  (linearNDFast)
45:15 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:15 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 02:00:00, weight 0.27) and
                      after (2024-06-12 03:00:00, weight 0.73) in time
45:15 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48573607355492 and -59.17533141079661 degrees.
45:15 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.48573607355492 and -59.17533141079661 degrees.
45:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:15 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:15 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:15 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:15 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:15 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:15 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:15 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:15 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:15 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.356773 (min) 0.184983 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.182953 (min) 0.322364 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.30084 (min) 1.61339 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.647166 (min) 1.87167 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 93.4121 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.3935 (min) 14.5876 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3436 (min) 33.412 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000465456 (min) 0.00123379 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:15 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:15 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:15 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:15 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:15 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:15 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:15 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:15 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
45:15 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2 0 2]
45:15 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0 3 0]
45:15 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  440.    0.]
 [   0.    0.    0.    0.    0.]
 [ 201.    0.    0.  930.    0.]
 [   5.    0. 1357.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:15 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:15 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:15 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002922782885507425
45:15 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:15 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:15 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:15 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:15 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:15 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 23
45:15 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:15 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 23 elements
45:15 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:15 INFO    opendrift.models.chemicaldrift:1861: partitioning: [215, 0, 274, 11, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:15 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:15 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:15 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:15 DEBUG   opendrift.models.basemodel:704: Lifting 7 elements to seafloor.
45:15 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:15 INFO    opendrift.models.basemodel:1985: 2024-06-12 03:14:03.285310 - step 74 of 96 - 500 active elements (0 deactivated)
45:15 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:15 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:15 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.82246779645325
45:15 DEBUG   opendrift.models.basemodel:2009:               10.50349044091542 <- longitude -> 10.82679841750382
45:15 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.29444411686487154
45:15 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:15 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:15 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:15 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:15 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:15 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 03:00:00 (before)
                2024-06-12 04:00:00 (after)
45:17 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:17 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:17 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:17 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:17 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 58x45x7) for time after (2024-06-12 04:00:00)
45:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 03:00:00) in space  (linearNDFast)
45:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 04:00:00) in space  (linearNDFast)
45:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 03:00:00, weight 0.77) and
                      after (2024-06-12 04:00:00, weight 0.23) in time
45:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.496520606392224 and -59.173212597427195 degrees.
45:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.496520606392224 and -59.173212597427195 degrees.
45:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.334317 (min) 0.222175 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.182147 (min) 0.322953 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.18517 (min) 1.84188 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.301998 (min) 1.86767 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 96.0328 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.3475 (min) 14.5725 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3402 (min) 33.4172 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000364246 (min) 0.00138894 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:17 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:17 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:17 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:17 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 2]
45:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 0]
45:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  441.    0.]
 [   0.    0.    0.    0.    0.]
 [ 205.    0.    0.  956.    0.]
 [   5.    0. 1380.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.002813308247587766
45:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:17 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
45:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
45:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [218, 0, 262, 20, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:17 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:17 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:17 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:17 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:17 INFO    opendrift.models.basemodel:1985: 2024-06-12 03:44:03.285310 - step 75 of 96 - 500 active elements (0 deactivated)
45:17 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:17 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:17 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.827245860774205
45:17 DEBUG   opendrift.models.basemodel:2009:               10.493385549889728 <- longitude -> 10.829320305499474
45:17 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.1281978403248108
45:17 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 03:00:00 (before)
                2024-06-12 04:00:00 (after)
45:17 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 03:00:00) in space  (linearNDFast)
45:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:17 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 04:00:00) in space  (linearNDFast)
45:17 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:17 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 03:00:00, weight 0.27) and
                      after (2024-06-12 04:00:00, weight 0.73) in time
45:17 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.50662549784457 and -59.170690698215736 degrees.
45:17 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.50662549784457 and -59.170690698215736 degrees.
45:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:17 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:17 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:17 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:17 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:17 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:17 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:17 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:17 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:17 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.331364 (min) 0.273405 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.179228 (min) 0.314131 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.06791 (min) 1.12527 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.0997721 (min) 1.79861 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 98.56 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.1324 (min) 14.5568 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3352 (min) 33.5024 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00024411 (min) 0.00158434 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:17 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:17 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
45:17 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:17 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:17 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:17 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:17 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
45:17 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 0 2]
45:17 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 3 0]
45:17 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  443.    0.]
 [   0.    0.    0.    0.    0.]
 [ 209.    0.    0.  973.    0.]
 [   5.    0. 1389.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:17 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:17 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:17 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0026135454646012994
45:17 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:17 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:17 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:17 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:17 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:17 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
45:17 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:17 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
45:17 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:17 INFO    opendrift.models.chemicaldrift:1861: partitioning: [220, 0, 247, 33, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:17 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:17 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:17 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:17 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:17 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:17 INFO    opendrift.models.basemodel:1985: 2024-06-12 04:14:03.285310 - step 76 of 96 - 500 active elements (0 deactivated)
45:17 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:17 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:17 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.831898818442816
45:17 DEBUG   opendrift.models.basemodel:2009:               10.483370720837723 <- longitude -> 10.83216528279347
45:17 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.1902615239740862
45:17 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:17 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:17 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:17 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:17 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:17 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 04:00:00 (before)
                2024-06-12 05:00:00 (after)
45:18 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:18 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:18 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:18 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:18 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:18 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:18 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 59x46x7) for time after (2024-06-12 05:00:00)
45:18 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 04:00:00) in space  (linearNDFast)
45:18 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:18 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 05:00:00) in space  (linearNDFast)
45:18 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:18 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 04:00:00, weight 0.77) and
                      after (2024-06-12 05:00:00, weight 0.23) in time
45:18 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:18 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.51664032909546 and -59.167845718097325 degrees.
45:18 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.51664032909546 and -59.167845718097325 degrees.
45:18 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:18 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:18 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:18 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:18 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:18 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:18 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:18 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:18 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:18 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:18 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:18 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:18 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:18 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:18 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:18 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:18 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:18 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:18 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:18 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:18 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:18 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:18 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.321019 (min) 0.310619 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.172595 (min) 0.297224 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.0136 (min) 1.10726 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.284575 (min) 1.75673 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 100.914 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 13.1361 (min) 14.5419 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3264 (min) 33.4735 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000200086 (min) 0.00144986 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:18 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:18 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:18 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:18 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:18 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:18 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:18 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:18 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 9
45:18 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 3 2 0 2 2 2]
45:18 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 3 0 0 0]
45:18 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  444.    0.]
 [   0.    0.    0.    0.    0.]
 [ 216.    0.    0.  990.    0.]
 [   6.    0. 1395.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:18 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:18 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:18 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:18 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:18 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.00256769872066507
45:18 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:18 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:18 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:18 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:18 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
45:18 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:18 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
45:18 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:18 INFO    opendrift.models.chemicaldrift:1861: partitioning: [227, 0, 231, 42, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:18 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:18 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:18 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:18 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:18 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:18 INFO    opendrift.models.basemodel:1985: 2024-06-12 04:44:03.285310 - step 77 of 96 - 500 active elements (0 deactivated)
45:18 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:18 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:18 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.8360151002812
45:18 DEBUG   opendrift.models.basemodel:2009:               10.47366928709401 <- longitude -> 10.835142348110987
45:18 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.16278368967920864
45:18 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:18 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:18 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:18 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:18 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 04:00:00 (before)
                2024-06-12 05:00:00 (after)
45:18 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 04:00:00) in space  (linearNDFast)
45:18 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:18 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 05:00:00) in space  (linearNDFast)
45:18 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1
45:18 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 04:00:00, weight 0.27) and
                      after (2024-06-12 05:00:00, weight 0.73) in time
45:18 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:18 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.52634176399544 and -59.164868658421085 degrees.
45:18 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.52634176399544 and -59.164868658421085 degrees.
45:18 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:18 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:18 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:18 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:18 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:18 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:18 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:18 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:18 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:18 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:19 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:19 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:19 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:19 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:19 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:19 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:19 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:19 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:19 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.317051 (min) 0.342992 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.171014 (min) 0.278401 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -1.00257 (min) 1.91651 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.520287 (min) 1.82092 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 102.941 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.9599 (min) 14.5581 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3255 (min) 33.4997 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000131923 (min) 0.00139852 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:19 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:19 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 7 elements to seafloor.
45:19 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:19 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:19 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:19 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:19 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
45:19 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2]
45:19 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0]
45:19 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  444.    0.]
 [   0.    0.    0.    0.    0.]
 [ 219.    0.    0. 1002.    0.]
 [   6.    0. 1398.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:19 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:19 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:19 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0034520671132805504
45:19 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:19 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:19 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:19 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:19 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:19 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3
45:19 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:19 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements
45:19 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:19 INFO    opendrift.models.chemicaldrift:1861: partitioning: [230, 0, 221, 49, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:19 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:19 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:19 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:19 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:19 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:19 INFO    opendrift.models.basemodel:1985: 2024-06-12 05:14:03.285310 - step 78 of 96 - 500 active elements (0 deactivated)
45:19 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:19 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:19 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.839748911325216
45:19 DEBUG   opendrift.models.basemodel:2009:               10.464088509227713 <- longitude -> 10.837786832035471
45:19 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.2924615985225822
45:19 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:19 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:19 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:19 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:19 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:19 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 05:00:00 (before)
                2024-06-12 06:00:00 (after)
45:20 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:20 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:20 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:20 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:20 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:20 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:20 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 60x48x7) for time after (2024-06-12 06:00:00)
45:20 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 05:00:00) in space  (linearNDFast)
45:20 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:20 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 06:00:00) in space  (linearNDFast)
45:20 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1
45:20 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 05:00:00, weight 0.77) and
                      after (2024-06-12 06:00:00, weight 0.23) in time
45:20 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:20 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.53592254956222 and -59.16222419544407 degrees.
45:20 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.53592254956222 and -59.16222419544407 degrees.
45:20 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:20 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:20 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:20 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:20 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:20 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:20 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:20 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:20 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:20 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:20 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:20 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:20 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:20 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:20 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:20 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:20 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:20 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:20 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:20 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:20 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:20 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:20 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.312283 (min) 0.363663 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.16765 (min) 0.245782 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.844209 (min) 2.28539 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.652172 (min) 1.75395 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 104.736 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.8485 (min) 14.5474 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2988 (min) 33.5086 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000195319 (min) 0.00140285 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:20 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:20 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:20 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:20 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:20 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:20 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:20 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
45:20 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
45:20 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
45:20 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  444.    0.]
 [   0.    0.    0.    0.    0.]
 [ 220.    0.    0. 1012.    0.]
 [   6.    0. 1401.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:20 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:20 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:20 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:20 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:20 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004766104781403091
45:20 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:20 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:20 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
45:20 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:20 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
45:20 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:20 INFO    opendrift.models.chemicaldrift:1861: partitioning: [231, 0, 214, 55, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:20 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:20 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:20 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:20 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:20 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:20 INFO    opendrift.models.basemodel:1985: 2024-06-12 05:44:03.285310 - step 79 of 96 - 500 active elements (0 deactivated)
45:20 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:20 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:20 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.842818740903084
45:20 DEBUG   opendrift.models.basemodel:2009:               10.454652489388632 <- longitude -> 10.840065841369944
45:20 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.2466643654625188
45:20 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:20 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:20 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:20 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:20 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 05:00:00 (before)
                2024-06-12 06:00:00 (after)
45:20 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 05:00:00) in space  (linearNDFast)
45:20 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:20 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 06:00:00) in space  (linearNDFast)
45:20 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:20 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 05:00:00, weight 0.27) and
                      after (2024-06-12 06:00:00, weight 0.73) in time
45:20 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:20 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.54535855454919 and -59.159945152201814 degrees.
45:20 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.54535855454919 and -59.159945152201814 degrees.
45:20 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:20 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:20 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:20 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:20 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:20 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:20 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:20 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:20 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:20 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:20 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:20 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:20 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:20 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:20 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:20 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:20 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:20 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:20 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:20 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:20 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:20 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:20 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.299232 (min) 0.396142 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.173898 (min) 0.21726 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.770432 (min) 2.12705 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.522057 (min) 1.62814 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 106.195 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.7089 (min) 14.5557 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.304 (min) 33.544 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000171684 (min) 0.00120903 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:20 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:20 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
45:20 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:20 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:20 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:20 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:20 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:20 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0 2]
45:20 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3 0]
45:20 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  445.    0.]
 [   0.    0.    0.    0.    0.]
 [ 223.    0.    0. 1019.    0.]
 [   6.    0. 1402.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:20 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:20 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:20 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:20 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:20 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0035438316516135868
45:20 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:20 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:20 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:20 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:20 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1
45:20 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:20 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements
45:20 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:20 INFO    opendrift.models.chemicaldrift:1861: partitioning: [233, 0, 206, 61, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:20 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:20 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:20 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:20 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:20 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:20 INFO    opendrift.models.basemodel:1985: 2024-06-12 06:14:03.285310 - step 80 of 96 - 500 active elements (0 deactivated)
45:20 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:20 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:20 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.84553943614179
45:20 DEBUG   opendrift.models.basemodel:2009:               10.445816405559086 <- longitude -> 10.842139747532055
45:20 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.31210485157641954
45:20 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:20 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:20 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:20 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:20 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:20 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 06:00:00 (before)
                2024-06-12 07:00:00 (after)
45:23 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:23 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:23 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:23 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:23 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 61x49x7) for time after (2024-06-12 07:00:00)
45:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 06:00:00) in space  (linearNDFast)
45:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 07:00:00) in space  (linearNDFast)
45:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 06:00:00, weight 0.77) and
                      after (2024-06-12 07:00:00, weight 0.23) in time
45:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.55419464492959 and -59.15787125713193 degrees.
45:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.55419464492959 and -59.15787125713193 degrees.
45:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.305759 (min) 0.416204 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.176209 (min) 0.185425 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.751761 (min) 2.1086 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.40141 (min) 1.6295 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 107.526 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.5692 (min) 14.5587 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3075 (min) 33.5579 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000113156 (min) 0.00111087 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:23 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:23 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:23 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:23 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 3
45:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 0]
45:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 3]
45:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  446.    0.]
 [   0.    0.    0.    0.    0.]
 [ 225.    0.    0. 1025.    0.]
 [   6.    0. 1403.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0039020027603798016
45:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
45:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
45:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [234, 0, 202, 64, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:23 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:23 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:23 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:23 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:23 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:23 INFO    opendrift.models.basemodel:1985: 2024-06-12 06:44:03.285310 - step 81 of 96 - 500 active elements (0 deactivated)
45:23 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:23 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:23 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.84832850042995
45:23 DEBUG   opendrift.models.basemodel:2009:               10.436914379629807 <- longitude -> 10.844099384912417
45:23 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.2877755661238286
45:23 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 06:00:00 (before)
                2024-06-12 07:00:00 (after)
45:23 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 06:00:00) in space  (linearNDFast)
45:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:23 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 07:00:00) in space  (linearNDFast)
45:23 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:23 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 06:00:00, weight 0.27) and
                      after (2024-06-12 07:00:00, weight 0.73) in time
45:23 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56309666991779 and -59.155911628489 degrees.
45:23 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.56309666991779 and -59.155911628489 degrees.
45:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:23 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:23 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:23 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:23 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:23 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:23 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:23 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:23 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:23 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.304647 (min) 0.425004 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.177962 (min) 0.180079 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.911841 (min) 2.21369 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.437761 (min) 1.87539 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 108.895 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.7564 (min) 14.5813 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3002 (min) 33.5867 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000294139 (min) 0.000937599 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:23 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:23 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:23 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:23 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:23 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:23 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:23 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
45:23 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2]
45:23 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0]
45:23 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  446.    0.]
 [   0.    0.    0.    0.    0.]
 [ 227.    0.    0. 1029.    0.]
 [   6.    0. 1405.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:23 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:23 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:23 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.003965024518912278
45:23 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:23 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:23 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:23 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:23 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:23 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:23 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
45:23 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:23 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
45:23 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:23 INFO    opendrift.models.chemicaldrift:1861: partitioning: [236, 0, 199, 65, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:23 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:23 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:23 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:23 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:23 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:23 INFO    opendrift.models.basemodel:1985: 2024-06-12 07:14:03.285310 - step 82 of 96 - 500 active elements (0 deactivated)
45:23 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:23 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:23 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.85123842189664
45:23 DEBUG   opendrift.models.basemodel:2009:               10.42853777967619 <- longitude -> 10.845525562554466
45:23 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.26754206486306614
45:23 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:23 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:23 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:23 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:23 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:23 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 07:00:00 (before)
                2024-06-12 08:00:00 (after)
45:27 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:27 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:27 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:27 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:27 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 62x49x7) for time after (2024-06-12 08:00:00)
45:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 07:00:00) in space  (linearNDFast)
45:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 08:00:00) in space  (linearNDFast)
45:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1
45:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 07:00:00, weight 0.77) and
                      after (2024-06-12 08:00:00, weight 0.23) in time
45:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.571473272396716 and -59.15448545669435 degrees.
45:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.571473272396716 and -59.15448545669435 degrees.
45:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.306125 (min) 0.429494 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.176891 (min) 0.152334 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: -0.480855 (min) 2.41244 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.29306 (min) 2.19661 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 1 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 110.317 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.5662 (min) 14.6165 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2846 (min) 33.5813 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00037413 (min) 0.000877547 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:27 DEBUG   opendrift.models.basemodel:662: 1 elements hit coastline, moving back to water
45:27 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:27 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:27 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
45:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0]
45:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3]
45:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  447.    0.]
 [   0.    0.    0.    0.    0.]
 [ 228.    0.    0. 1036.    0.]
 [   6.    0. 1411.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004591563808653709
45:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:27 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
45:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
45:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [236, 0, 195, 69, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:27 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:27 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:27 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:27 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:27 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:27 INFO    opendrift.models.basemodel:1985: 2024-06-12 07:44:03.285310 - step 83 of 96 - 500 active elements (0 deactivated)
45:27 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:27 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:27 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.8535819014253
45:27 DEBUG   opendrift.models.basemodel:2009:               10.420193426934697 <- longitude -> 10.846444848390556
45:27 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.2516318453509904
45:27 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 07:00:00 (before)
                2024-06-12 08:00:00 (after)
45:27 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 07:00:00) in space  (linearNDFast)
45:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:27 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 08:00:00) in space  (linearNDFast)
45:27 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:27 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 07:00:00, weight 0.27) and
                      after (2024-06-12 08:00:00, weight 0.73) in time
45:27 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57981762986735 and -59.153566153273616 degrees.
45:27 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.57981762986735 and -59.153566153273616 degrees.
45:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:27 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:27 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:27 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:27 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:27 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:27 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:27 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:27 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:27 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.306914 (min) 0.427636 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.17632 (min) 0.174407 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.0341117 (min) 2.9306 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.337038 (min) 2.28046 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 111.343 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.6796 (min) 14.6567 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3469 (min) 33.5555 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000498964 (min) 0.000754404 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:27 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:27 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:27 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:27 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:27 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:27 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:27 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 1
45:27 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2]
45:27 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0]
45:27 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  447.    0.]
 [   0.    0.    0.    0.    0.]
 [ 229.    0.    0. 1041.    0.]
 [   6.    0. 1413.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:27 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:27 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:27 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.006634559343479712
45:27 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:27 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:27 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:27 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:27 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9
45:27 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:27 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements
45:27 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:27 INFO    opendrift.models.chemicaldrift:1861: partitioning: [237, 0, 200, 63, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:27 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:27 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:27 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:27 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:27 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:27 INFO    opendrift.models.basemodel:1985: 2024-06-12 08:14:03.285310 - step 84 of 96 - 500 active elements (0 deactivated)
45:27 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:27 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:27 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.85640009979909
45:27 DEBUG   opendrift.models.basemodel:2009:               10.412155605161416 <- longitude -> 10.84645030918902
45:27 DEBUG   opendrift.models.basemodel:2014:               -35.140052795410156   <- z ->   -0.19573061831650518
45:27 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:27 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:27 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:27 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:27 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:27 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 08:00:00 (before)
                2024-06-12 09:00:00 (after)
45:29 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:29 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:29 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:29 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:29 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 63x51x7) for time after (2024-06-12 09:00:00)
45:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 08:00:00) in space  (linearNDFast)
45:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 09:00:00) in space  (linearNDFast)
45:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 08:00:00, weight 0.77) and
                      after (2024-06-12 09:00:00, weight 0.23) in time
45:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.587855451858644 and -59.1535607062247 degrees.
45:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.587855451858644 and -59.1535607062247 degrees.
45:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.307545 (min) 0.415386 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.168523 (min) 0.144637 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.103472 (min) 3.92876 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.353648 (min) 2.30176 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 112.591 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.7209 (min) 14.6573 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.32 (min) 33.5916 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000501252 (min) 0.000701509 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:29 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:29 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:29 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:29 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 0]
45:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 3]
45:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  449.    0.]
 [   0.    0.    0.    0.    0.]
 [ 232.    0.    0. 1044.    0.]
 [   6.    0. 1422.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012277000337450952
45:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
45:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
45:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [238, 0, 197, 65, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:29 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:29 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:29 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:29 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:29 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:29 INFO    opendrift.models.basemodel:1985: 2024-06-12 08:44:03.285310 - step 85 of 96 - 500 active elements (0 deactivated)
45:29 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:29 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:29 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.85855481453169
45:29 DEBUG   opendrift.models.basemodel:2009:               10.40511132333134 <- longitude -> 10.845437868365057
45:29 DEBUG   opendrift.models.basemodel:2014:               -36.00880748173603   <- z ->   -0.07741340142167563
45:29 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 08:00:00 (before)
                2024-06-12 09:00:00 (after)
45:29 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 08:00:00) in space  (linearNDFast)
45:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:29 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 09:00:00) in space  (linearNDFast)
45:29 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:29 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 08:00:00, weight 0.27) and
                      after (2024-06-12 09:00:00, weight 0.73) in time
45:29 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.59489972893235 and -59.154573137945825 degrees.
45:29 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.59489972893235 and -59.154573137945825 degrees.
45:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:29 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:29 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:29 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:29 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:29 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:29 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:29 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:29 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:29 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.307959 (min) 0.387399 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.174476 (min) 0.161901 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 0.611023 (min) 5.57154 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.257556 (min) 2.24015 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 1 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 113.313 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.6507 (min) 14.6997 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3142 (min) 33.6093 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000547213 (min) 0.000593794 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:29 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:29 DEBUG   opendrift.models.basemodel:662: 1 elements hit coastline, moving back to water
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
45:29 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:29 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:29 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:29 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:29 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:29 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0]
45:29 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3]
45:29 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  450.    0.]
 [   0.    0.    0.    0.    0.]
 [ 235.    0.    0. 1050.    0.]
 [   6.    0. 1428.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:29 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:29 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:29 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02606186912696911
45:29 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:29 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:29 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:29 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:29 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 22
45:29 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:29 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 22 elements
45:29 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:29 INFO    opendrift.models.chemicaldrift:1861: partitioning: [240, 0, 205, 55, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:29 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:29 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:29 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:29 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:29 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:29 INFO    opendrift.models.basemodel:1985: 2024-06-12 09:14:03.285310 - step 86 of 96 - 500 active elements (0 deactivated)
45:29 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:29 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:29 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.859906832028784
45:29 DEBUG   opendrift.models.basemodel:2009:               10.398137346852312 <- longitude -> 10.8444261873819
45:29 DEBUG   opendrift.models.basemodel:2014:               -36.103148638717016   <- z ->   -0.10792783512989046
45:29 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:29 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:29 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:29 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:29 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:29 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 09:00:00 (before)
                2024-06-12 10:00:00 (after)
45:30 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:30 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:30 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:30 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:30 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:30 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:30 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 64x52x7) for time after (2024-06-12 10:00:00)
45:30 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 09:00:00) in space  (linearNDFast)
45:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:30 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 10:00:00) in space  (linearNDFast)
45:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1
45:30 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 09:00:00, weight 0.77) and
                      after (2024-06-12 10:00:00, weight 0.23) in time
45:30 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.60187371529298 and -59.155584812961635 degrees.
45:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.60187371529298 and -59.155584812961635 degrees.
45:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:30 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:30 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:30 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:30 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.299306 (min) 0.374509 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.184393 (min) 0.184309 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 1.42284 (min) 6.53063 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.0676079 (min) 2.63389 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 113.539 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 12.3447 (min) 14.7687 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.322 (min) 33.6161 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000619477 (min) 0.000573514 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:30 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:30 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:30 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:30 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:30 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:30 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:30 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
45:30 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 0]
45:30 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 3]
45:30 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  452.    0.]
 [   0.    0.    0.    0.    0.]
 [ 235.    0.    0. 1061.    0.]
 [   6.    0. 1450.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:30 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:30 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:30 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03583614594864615
45:30 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:30 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:30 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
45:30 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
45:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:30 INFO    opendrift.models.chemicaldrift:1861: partitioning: [238, 0, 209, 53, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:30 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:30 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:30 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 6 elements to seafloor.
45:30 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:30 INFO    opendrift.models.basemodel:1985: 2024-06-12 09:44:03.285310 - step 87 of 96 - 500 active elements (0 deactivated)
45:30 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:30 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:30 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.8604521120828
45:30 DEBUG   opendrift.models.basemodel:2009:               10.391948206120833 <- longitude -> 10.84412933776978
45:30 DEBUG   opendrift.models.basemodel:2014:               -36.42389366621336   <- z ->   -0.11148965996152782
45:30 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:30 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 09:00:00 (before)
                2024-06-12 10:00:00 (after)
45:30 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 09:00:00) in space  (linearNDFast)
45:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:30 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 10:00:00) in space  (linearNDFast)
45:30 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:30 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 09:00:00, weight 0.27) and
                      after (2024-06-12 10:00:00, weight 0.73) in time
45:30 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.60806286442903 and -59.1558816848982 degrees.
45:30 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.60806286442903 and -59.1558816848982 degrees.
45:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:30 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:30 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:30 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:30 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:30 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:30 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:30 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:30 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:30 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.297728 (min) 0.359145 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.178108 (min) 0.219494 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 2.6726 (min) 6.71207 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.307406 (min) 2.44682 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 113.26 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.9239 (min) 14.7907 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.316 (min) 33.6513 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000593034 (min) 0.000555336 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:30 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:30 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:30 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:30 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:30 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:30 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:30 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
45:30 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 2 0]
45:30 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 0 3]
45:30 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  455.    0.]
 [   0.    0.    0.    0.    0.]
 [ 238.    0.    0. 1065.    0.]
 [   6.    0. 1458.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:30 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:30 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:30 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03688565922158001
45:30 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:30 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:30 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:30 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:30 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:30 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 18
45:30 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:30 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 18 elements
45:30 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:30 INFO    opendrift.models.chemicaldrift:1861: partitioning: [238, 0, 214, 48, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:30 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:30 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:30 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:30 DEBUG   opendrift.models.basemodel:704: Lifting 8 elements to seafloor.
45:30 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:30 INFO    opendrift.models.basemodel:1985: 2024-06-12 10:14:03.285310 - step 88 of 96 - 500 active elements (0 deactivated)
45:30 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:30 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:30 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.86109050466041
45:30 DEBUG   opendrift.models.basemodel:2009:               10.386029303826916 <- longitude -> 10.844601667678344
45:30 DEBUG   opendrift.models.basemodel:2014:               -36.406212887845115   <- z ->   0.0
45:30 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:30 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:30 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:30 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:30 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:30 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 10:00:00 (before)
                2024-06-12 11:00:00 (after)
45:32 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:32 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:32 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:32 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:32 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:32 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:32 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 65x52x7) for time after (2024-06-12 11:00:00)
45:32 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 10:00:00) in space  (linearNDFast)
45:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:32 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 11:00:00) in space  (linearNDFast)
45:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1
45:32 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 10:00:00, weight 0.77) and
                      after (2024-06-12 11:00:00, weight 0.23) in time
45:32 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.61398175590824 and -59.15540934546307 degrees.
45:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.61398175590824 and -59.15540934546307 degrees.
45:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:32 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:32 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:32 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:32 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.322145 (min) 0.36223 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.190522 (min) 0.226317 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.25922 (min) 6.95068 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.829055 (min) 2.4569 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 112.956 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.4715 (min) 14.8372 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.269 (min) 33.74 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000556032 (min) 0.00059374 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:32 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:32 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:32 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:32 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:32 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:32 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:32 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 7
45:32 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 2 0 2]
45:32 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 0 3 0]
45:32 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  459.    0.]
 [   0.    0.    0.    0.    0.]
 [ 241.    0.    0. 1075.    0.]
 [   6.    0. 1476.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:32 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:32 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:32 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.039264298014789784
45:32 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:32 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:32 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
45:32 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
45:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:32 INFO    opendrift.models.chemicaldrift:1861: partitioning: [237, 0, 215, 48, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:32 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:32 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:32 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:32 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:32 INFO    opendrift.models.basemodel:1985: 2024-06-12 10:44:03.285310 - step 89 of 96 - 500 active elements (0 deactivated)
45:32 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:32 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:32 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.86377205495629
45:32 DEBUG   opendrift.models.basemodel:2009:               10.379674069095607 <- longitude -> 10.845309593445313
45:32 DEBUG   opendrift.models.basemodel:2014:               -35.784756962815194   <- z ->   -0.16798985245015197
45:32 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:32 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 10:00:00 (before)
                2024-06-12 11:00:00 (after)
45:32 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 10:00:00) in space  (linearNDFast)
45:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:32 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 11:00:00) in space  (linearNDFast)
45:32 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:32 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 10:00:00, weight 0.27) and
                      after (2024-06-12 11:00:00, weight 0.73) in time
45:32 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.62033699376687 and -59.15470142942323 degrees.
45:32 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.62033699376687 and -59.15470142942323 degrees.
45:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:32 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:32 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:32 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:32 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:32 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:32 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:32 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:32 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:32 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.306278 (min) 0.362487 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.176324 (min) 0.218745 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.37903 (min) 7.25098 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.633757 (min) 2.73058 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 113.488 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.4751 (min) 14.8156 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2975 (min) 33.7389 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000566148 (min) 0.000769853 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:32 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:32 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:32 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:32 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:32 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:32 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:32 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 8
45:32 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 0 2 2]
45:32 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 3 0 0]
45:32 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  460.    0.]
 [   0.    0.    0.    0.    0.]
 [ 248.    0.    0. 1076.    0.]
 [   6.    0. 1481.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:32 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:32 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:32 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0431685746630173
45:32 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:32 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:32 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:32 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:32 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:32 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:32 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:32 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10
45:32 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:32 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements
45:32 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:32 INFO    opendrift.models.chemicaldrift:1861: partitioning: [243, 0, 211, 46, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:32 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:32 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:32 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:32 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:32 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:32 INFO    opendrift.models.basemodel:1985: 2024-06-12 11:14:03.285310 - step 90 of 96 - 500 active elements (0 deactivated)
45:32 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:32 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:32 DEBUG   opendrift.models.basemodel:2004:               57.59005032067586 <- latitude  -> 57.86624134133314
45:32 DEBUG   opendrift.models.basemodel:2009:               10.373436794137273 <- longitude -> 10.854606031309292
45:32 DEBUG   opendrift.models.basemodel:2014:               -38.53823884620104   <- z ->   -0.06928095389292704
45:32 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:32 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:32 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:32 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:32 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:32 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 11:00:00 (before)
                2024-06-12 12:00:00 (after)
45:39 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:39 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:39 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:39 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:39 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:39 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:39 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 66x53x7) for time after (2024-06-12 12:00:00)
45:39 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 11:00:00) in space  (linearNDFast)
45:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:39 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 12:00:00) in space  (linearNDFast)
45:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 10 elements, expanding data 1
45:39 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 11:00:00, weight 0.77) and
                      after (2024-06-12 12:00:00, weight 0.23) in time
45:39 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.626574273691105 and -59.14540493439557 degrees.
45:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.626574273691105 and -59.14540493439557 degrees.
45:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:39 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:39 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:39 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:39 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.327536 (min) 0.369111 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.174789 (min) 0.248489 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 3.60007 (min) 7.54009 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.44296 (min) 2.95554 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 113.794 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.1262 (min) 14.8413 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.0558 (min) 33.7162 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000597466 (min) 0.000765992 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:39 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:39 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:39 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:39 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:39 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:39 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:39 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2]
45:39 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0]
45:39 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  461.    0.]
 [   0.    0.    0.    0.    0.]
 [ 251.    0.    0. 1083.    0.]
 [   6.    0. 1491.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:39 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:39 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:39 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04728787736600007
45:39 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:39 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:39 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:39 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:39 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 14
45:39 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 14 elements
45:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:39 INFO    opendrift.models.chemicaldrift:1861: partitioning: [245, 0, 208, 47, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:39 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:39 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:39 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:39 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:39 INFO    opendrift.models.basemodel:1985: 2024-06-12 11:44:03.285310 - step 91 of 96 - 500 active elements (0 deactivated)
45:39 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:39 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:39 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.86966567852975
45:39 DEBUG   opendrift.models.basemodel:2009:               10.367236765042042 <- longitude -> 10.863606320520976
45:39 DEBUG   opendrift.models.basemodel:2014:               -37.74374428062717   <- z ->   0.0
45:39 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:39 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 11:00:00 (before)
                2024-06-12 12:00:00 (after)
45:39 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 11:00:00) in space  (linearNDFast)
45:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:39 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 12:00:00) in space  (linearNDFast)
45:39 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:39 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 11:00:00, weight 0.27) and
                      after (2024-06-12 12:00:00, weight 0.73) in time
45:39 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.63277430506035 and -59.136404643090295 degrees.
45:39 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.63277430506035 and -59.136404643090295 degrees.
45:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:39 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:39 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:39 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:39 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:39 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:39 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:39 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:39 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:39 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.328621 (min) 0.346152 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.151628 (min) 0.284494 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 4.51098 (min) 7.81442 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: -0.204618 (min) 3.22589 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 114.611 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.286 (min) 14.8563 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.0558 (min) 33.767 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000706005 (min) 0.000821379 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:39 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:39 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 4 elements to seafloor.
45:39 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:39 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:39 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:39 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:39 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:39 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2]
45:39 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0]
45:39 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  462.    0.]
 [   0.    0.    0.    0.    0.]
 [ 254.    0.    0. 1097.    0.]
 [   6.    0. 1505.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:39 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:39 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:39 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05147865771493848
45:39 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:39 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:39 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:39 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:39 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:39 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6
45:39 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:39 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements
45:39 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:39 INFO    opendrift.models.chemicaldrift:1861: partitioning: [247, 0, 210, 43, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:39 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:39 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:39 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:39 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:39 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:39 INFO    opendrift.models.basemodel:1985: 2024-06-12 12:14:03.285310 - step 92 of 96 - 500 active elements (0 deactivated)
45:39 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:39 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:39 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.8719547292321
45:39 DEBUG   opendrift.models.basemodel:2009:               10.360414871332468 <- longitude -> 10.86949621950862
45:39 DEBUG   opendrift.models.basemodel:2014:               -38.94684575428397   <- z ->   0.0
45:39 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:39 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:39 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:39 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:39 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:39 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 12:00:00 (before)
                2024-06-12 13:00:00 (after)
45:40 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:40 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:40 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:40 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:40 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 67x54x7) for time after (2024-06-12 13:00:00)
45:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 12:00:00) in space  (linearNDFast)
45:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 13:00:00) in space  (linearNDFast)
45:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1
45:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 12:00:00, weight 0.77) and
                      after (2024-06-12 13:00:00, weight 0.23) in time
45:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.639596196885236 and -59.13051474708331 degrees.
45:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.639596196885236 and -59.13051474708331 degrees.
45:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.295707 (min) 0.365472 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.141228 (min) 0.269599 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.05107 (min) 8.04635 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.507331 (min) 3.40323 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 114.755 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.9375 (min) 14.844 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3095 (min) 33.8361 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.00066546 (min) 0.000771724 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:40 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:40 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:40 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:40 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 6
45:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 0 2]
45:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 3 0]
45:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  464.    0.]
 [   0.    0.    0.    0.    0.]
 [ 258.    0.    0. 1098.    0.]
 [   6.    0. 1511.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05316225177650081
45:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5
45:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements
45:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [249, 0, 208, 43, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:40 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:40 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:40 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:40 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:40 INFO    opendrift.models.basemodel:1985: 2024-06-12 12:44:03.285310 - step 93 of 96 - 500 active elements (0 deactivated)
45:40 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:40 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:40 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.875817355742576
45:40 DEBUG   opendrift.models.basemodel:2009:               10.355279845305429 <- longitude -> 10.874946218580623
45:40 DEBUG   opendrift.models.basemodel:2014:               -39.11576230784218   <- z ->   0.0
45:40 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 12:00:00 (before)
                2024-06-12 13:00:00 (after)
45:40 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 12:00:00) in space  (linearNDFast)
45:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:40 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 13:00:00) in space  (linearNDFast)
45:40 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:40 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 12:00:00, weight 0.27) and
                      after (2024-06-12 13:00:00, weight 0.73) in time
45:40 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.64473123169405 and -59.125064744199804 degrees.
45:40 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.64473123169405 and -59.125064744199804 degrees.
45:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:40 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:40 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:40 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:40 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:40 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:40 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:40 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:40 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:40 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.313033 (min) 0.370136 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.147373 (min) 0.27069 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.19235 (min) 8.3131 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 0.925784 (min) 3.81216 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 115.879 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 11.0347 (min) 14.8308 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2248 (min) 33.7998 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000769141 (min) 0.000720492 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:40 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:40 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:40 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:40 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:40 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:40 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:40 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:40 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:40 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0]
45:40 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3]
45:40 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  465.    0.]
 [   0.    0.    0.    0.    0.]
 [ 262.    0.    0. 1101.    0.]
 [   6.    0. 1516.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:40 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:40 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:40 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05665462992854907
45:40 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:40 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:40 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:40 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:40 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:40 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 13
45:40 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:40 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 13 elements
45:40 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:40 INFO    opendrift.models.chemicaldrift:1861: partitioning: [252, 0, 210, 38, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:40 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:40 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:40 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:40 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
45:40 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:40 INFO    opendrift.models.basemodel:1985: 2024-06-12 13:14:03.285310 - step 94 of 96 - 500 active elements (0 deactivated)
45:40 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:40 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:40 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.879857798380655
45:40 DEBUG   opendrift.models.basemodel:2009:               10.349989758925277 <- longitude -> 10.880896117785626
45:40 DEBUG   opendrift.models.basemodel:2014:               -39.36976814735027   <- z ->   0.0
45:40 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:40 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:40 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:40 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:40 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:40 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 13:00:00 (before)
                2024-06-12 14:00:00 (after)
45:44 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:44 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:44 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:44 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:44 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 69x55x7) for time after (2024-06-12 14:00:00)
45:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 13:00:00) in space  (linearNDFast)
45:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 14:00:00) in space  (linearNDFast)
45:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 12 elements, expanding data 1
45:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 13:00:00, weight 0.77) and
                      after (2024-06-12 14:00:00, weight 0.23) in time
45:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.650021309922025 and -59.119114844781414 degrees.
45:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.650021309922025 and -59.119114844781414 degrees.
45:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.307175 (min) 0.389545 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.140361 (min) 0.286949 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.24741 (min) 8.6354 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.27917 (min) 4.22348 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 117.184 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.905 (min) 14.7935 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2333 (min) 33.8355 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000834948 (min) 0.000594469 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:44 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 2 elements to seafloor.
45:44 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:44 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 4
45:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 2 2 0]
45:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 0 0 3]
45:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  466.    0.]
 [   0.    0.    0.    0.    0.]
 [ 265.    0.    0. 1108.    0.]
 [   6.    0. 1529.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.062092696258550815
45:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4
45:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements
45:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [254, 0, 207, 39, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:44 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:44 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:44 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 3 elements to seafloor.
45:44 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:44 INFO    opendrift.models.basemodel:1985: 2024-06-12 13:44:03.285310 - step 95 of 96 - 500 active elements (0 deactivated)
45:44 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:44 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:44 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.88354564212105
45:44 DEBUG   opendrift.models.basemodel:2009:               10.349307971582887 <- longitude -> 10.887582520876018
45:44 DEBUG   opendrift.models.basemodel:2014:               -40.07865920920173   <- z ->   0.0
45:44 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 13:00:00 (before)
                2024-06-12 14:00:00 (after)
45:44 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 13:00:00) in space  (linearNDFast)
45:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:44 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 14:00:00) in space  (linearNDFast)
45:44 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:44 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 13:00:00, weight 0.27) and
                      after (2024-06-12 14:00:00, weight 0.73) in time
45:44 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.650703093634704 and -59.112428434727676 degrees.
45:44 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.650703093634704 and -59.112428434727676 degrees.
45:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:44 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:44 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:44 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:44 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:44 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:44 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:44 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:44 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:44 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.29486 (min) 0.452062 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.144383 (min) 0.299458 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 5.76737 (min) 9.00538 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 1.76859 (min) 4.29817 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 118.124 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.9273 (min) 14.7482 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.3342 (min) 33.827 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000796266 (min) 0.000599198 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:44 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:44 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:44 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:44 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:44 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:44 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 5
45:44 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 2]
45:44 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 0]
45:44 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  468.    0.]
 [   0.    0.    0.    0.    0.]
 [ 268.    0.    0. 1112.    0.]
 [   6.    0. 1533.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:44 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:44 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:44 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0686338505566053
45:44 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:44 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:44 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:44 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:44 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8
45:44 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:44 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements
45:44 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:44 INFO    opendrift.models.chemicaldrift:1861: partitioning: [255, 0, 209, 36, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:44 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:44 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:44 DEBUG   opendrift.models.basemodel:840: to be seeded: 0, already seeded 500
45:44 DEBUG   opendrift.models.basemodel:704: Lifting 5 elements to seafloor.
45:44 DEBUG   opendrift.models.basemodel:1984: ======================================================================
45:44 INFO    opendrift.models.basemodel:1985: 2024-06-12 14:14:03.285310 - step 96 of 96 - 500 active elements (0 deactivated)
45:44 DEBUG   opendrift.models.basemodel:1991: 0 elements scheduled.
45:44 DEBUG   opendrift.models.basemodel:1993: ======================================================================
45:44 DEBUG   opendrift.models.basemodel:2004:               57.59005032067585 <- latitude  -> 57.886319732173035
45:44 DEBUG   opendrift.models.basemodel:2009:               10.346299780974041 <- longitude -> 10.897361043195113
45:44 DEBUG   opendrift.models.basemodel:2014:               -40.3199813323396   <- z ->   0.0
45:44 DEBUG   opendrift.models.basemodel:2015: ---------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity']
45:44 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
45:44 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:44 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:44 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements
45:44 DEBUG   opendrift.readers.basereader.structured:222: Reader time:
                2024-06-12 14:00:00 (before)
                2024-06-12 15:00:00 (after)
45:46 DEBUG   opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values
45:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_wind for invalid values
45:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_wind for invalid values
45:46 DEBUG   opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values
45:46 DEBUG   opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values
45:46 DEBUG   opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['upward_sea_water_velocity', 'y_sea_water_velocity', 'x_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
45:46 DEBUG   opendrift.readers.basereader.structured:313: Fetched env-block (size 70x55x7) for time after (2024-06-12 15:00:00)
45:46 DEBUG   opendrift.readers.basereader.structured:334: Interpolating before (2024-06-12 14:00:00) in space  (linearNDFast)
45:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:46 DEBUG   opendrift.readers.basereader.structured:340: Interpolating after (2024-06-12 15:00:00) in space  (linearNDFast)
45:46 DEBUG   opendrift.readers.interpolation.structured:80: Initialising interpolator.
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift:135: Linear2DInterpolator informational: NaN values for 7 elements, expanding data 1
45:46 DEBUG   opendrift.readers.basereader.structured:355: Interpolating before (2024-06-12 14:00:00, weight 0.77) and
                      after (2024-06-12 15:00:00, weight 0.23) in time
45:46 DEBUG   opendrift.readers.basereader.structured:368: Interpolating profiles in time
45:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.653711286371134 and -59.10264991288006 degrees.
45:46 DEBUG   opendrift.readers.basereader.variables:96: Rotating vectors between -59.653711286371134 and -59.10264991288006 degrees.
45:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness']
45:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader constant_reader
45:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements
45:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:46 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:46 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:46 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:46 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:46 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:46 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:46 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:46 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:46 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:46 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:46 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:46 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:46 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles
45:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 10 for sea_water_temperature for 0 profiles
45:46 DEBUG   opendrift.models.basemodel.environment:814:       Using fallback value 34 for sea_water_salinity for 0 profiles
45:46 DEBUG   opendrift.models.basemodel.environment:803:       Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles
45:46 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:46 DEBUG   opendrift.models.basemodel.environment:905:     x_sea_water_velocity: -0.274853 (min) 0.472541 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     y_sea_water_velocity: -0.129567 (min) 0.312797 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_surface_height: 0 (min) 0 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     x_wind: 6.03211 (min) 9.06994 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     y_wind: 2.09833 (min) 4.72571 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_floor_depth_below_sea_level: 10.7775 (min) 118.379 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_temperature: 10.836 (min) 14.8283 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_salinity: 31.2816 (min) 33.8403 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     upward_sea_water_velocity: -0.000691551 (min) 0.000525663 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     spm: 1 (min) 1 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     ocean_mixed_layer_thickness: 40 (min) 40 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     active_sediment_layer_thickness: 0.03 (min) 0.03 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     doc: 0 (min) 0 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:905:     pH_sediment: 6.9 (min) 6.9 (max)
45:46 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:46 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:46 DEBUG   opendrift.models.basemodel:699: No elements hit seafloor.
45:47 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:47 DEBUG   opendrift.models.basemodel:2056: Calling ChemicalDrift.update()
45:47 DEBUG   opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants
45:47 DEBUG   opendrift.models.chemicaldrift:1722: Calculating: volatilization
45:47 INFO    opendrift.models.chemicaldrift:1435: Number of transformations: 2
45:47 DEBUG   opendrift.models.chemicaldrift:1452: old species: [2 0]
45:47 DEBUG   opendrift.models.chemicaldrift:1453: new species: [0 3]
45:47 DEBUG   opendrift.models.chemicaldrift:1460: Number of transformations total:
 [[   0.    0.    0.  469.    0.]
 [   0.    0.    0.    0.    0.]
 [ 269.    0.    0. 1115.    0.]
 [   6.    0. 1541.    0.    0.]
 [   0.    0.    0.    0.    0.]]
45:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements
45:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:47 DEBUG   opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m
45:47 DEBUG   opendrift.models.oceandrift:530: Using functional expression for diffusivity
45:47 DEBUG   opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.07229551415385624
45:47 DEBUG   opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing
45:47 DEBUG   opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994
45:47 DEBUG   opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom
45:47 DEBUG   opendrift.models.basemodel:704: Lifting 1 elements to seafloor.
45:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up
45:47 DEBUG   opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up
45:47 INFO    opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2
45:47 DEBUG   opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m
45:47 DEBUG   opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements
45:47 DEBUG   opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m
45:47 INFO    opendrift.models.chemicaldrift:1861: partitioning: [255, 0, 208, 37, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible']
45:47 DEBUG   opendrift.models.basemodel:1608: Horizontal diffusivity is 0, no random walk.
45:47 DEBUG   opendrift.models.basemodel:2071: 500 active elements (0 deactivated)
45:47 DEBUG   opendrift.models.basemodel:2100: Cleaning up
45:47 DEBUG   opendrift.models.basemodel.environment:607: ----------------------------------------
45:47 DEBUG   opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask']
45:47 DEBUG   opendrift.models.basemodel.environment:609: ----------------------------------------
45:47 DEBUG   opendrift.models.basemodel.environment:613: Calling reader global_landmask
45:47 DEBUG   opendrift.models.basemodel.environment:614: ----------------------------------------
45:47 DEBUG   opendrift.models.basemodel.environment:630: Data needed for 500 elements
45:47 DEBUG   opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements
45:47 DEBUG   opendrift.readers.basereader.continuous:37: Fetched env-before
45:47 DEBUG   opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
45:47 DEBUG   opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
45:47 DEBUG   opendrift.models.basemodel.environment:764: Obtained data for all elements.
45:47 DEBUG   opendrift.models.basemodel.environment:777: ---------------------------------------
45:47 DEBUG   opendrift.models.basemodel.environment:778: Finished processing all variable groups
45:47 DEBUG   opendrift.models.basemodel.environment:903: ------------ SUMMARY -------------
45:47 DEBUG   opendrift.models.basemodel.environment:905:     land_binary_mask: 0 (min) 0 (max)
45:47 DEBUG   opendrift.models.basemodel.environment:907: ---------------------------------
45:47 DEBUG   opendrift.models.basemodel:660: No elements hit coastline.
45:47 DEBUG   opendrift.models.basemodel:1657: No elements to deactivate
45:47 DEBUG   opendrift.models.basemodel:92: Changed mode from Mode.Run to Mode.Result

Print and plot results

print('Final speciation:')
for isp,sp in enumerate(o.name_species):
    print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp)))

print('Number of transformations:')
for isp in range(o.nspecies):
    print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) )

mass = o.get_property('mass')
mass_d = o.get_property('mass_degraded')
mass_v = o.get_property('mass_volatilized')

m_pre = sum(mass[0][-1])
m_deg = sum(mass_d[0][-1])
m_vol = sum(mass_v[0][-1])
m_tot = m_pre + m_deg + m_vol

print('Mass budget for target chemical:')
print('mass preserved       : {:.3f}'.format(m_pre * 1e-6),' g   {:.3f}'.format(m_pre/m_tot*100),'%')
print('mass degraded        : {:.3f}'.format(m_deg * 1e-6),' g   {:.3f}'.format(m_deg/m_tot*100),'%')
print('mass volatilized     : {:.3f}'.format(m_vol * 1e-6),' g   {:.3f}'.format(m_vol/m_tot*100),'%')

legend=['dissolved', '', 'SPM', 'sediment', '']

o.animation_profile(color='specie',
            markersize='mass',
            markersize_scaling=30,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            legend = legend,
            legend_loc = 3,
            fps = 10
            )

Final speciation:
LMM                             :    255
Humic colloid                   :      0
Particle reversible             :    208
Sediment reversible             :     37
Sediment slowly reversible      :      0
Number of transformations:
['        0', '        0', '        0', '      469', '        0']
['        0', '        0', '        0', '        0', '        0']
['      269', '        0', '        0', '     1117', '        0']
['        6', '        0', '     1543', '        0', '        0']
['        0', '        0', '        0', '        0', '        0']
Mass budget for target chemical:
mass preserved       : 0.378  g   37.810 %
mass degraded        : 0.620  g   62.040 %
mass volatilized     : 0.002  g   0.150 %
14:45:47 DEBUG   opendrift.models.basemodel:2987: Saving animation..
14:45:47 INFO    opendrift.models.basemodel:4547: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif...
14:45:59 DEBUG   opendrift.models.basemodel:4585: MPLBACKEND = agg
14:45:59 DEBUG   opendrift.models.basemodel:4586: DISPLAY = None
14:45:59 DEBUG   opendrift.models.basemodel:4587: Time to save animation: 0:00:12.365869
14:45:59 INFO    opendrift.models.basemodel:3194: Time to make animation: 0:00:12.578785

o.animation(color='specie',
            markersize='mass',
            markersize_scaling=100,
            alpha=.5,
            vmin=0,vmax=o.nspecies-1,
            colorbar=False,
            fast = True,
            legend = legend,
            legend_loc = 3,
            fps=10
            )

45:59 DEBUG   opendrift.models.basemodel:2310: Setting up map: corners=None, fast=True, lscale=None
45:59 WARNING opendrift.models.basemodel:2356: Plotting fast. This will make your plots less accurate.
46:01 DEBUG   opendrift.models.basemodel:2987: Saving animation..
46:01 INFO    opendrift.models.basemodel:4547: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif...
47:01 DEBUG   opendrift.models.basemodel:4585: MPLBACKEND = agg
47:01 DEBUG   opendrift.models.basemodel:4586: DISPLAY = None
47:01 DEBUG   opendrift.models.basemodel:4587: Time to save animation: 0:00:59.893875
47:01 INFO    opendrift.models.basemodel:2980: Time to make animation: 0:01:01.841386

o.plot_mass(legend = legend,
            time_unit = 'hours',
            title = 'Chemical mass budget')

dissolved : 0.110978046875g (29.35147335503516%)
SPM : 0.23928449999999998g (63.285963519736974%)
sediment : 0.0278378828125g (7.36256312522787%)
/root/project/opendrift/models/chemicaldrift.py:3006: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator.
  ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor))

Total running time of the script: (3 minutes 7.378 seconds)

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