CellRouter
Input saved to /scratch/irc/personal/robrechtc/tmp//Rtmp36QdYC/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘igraph’
The following object is masked from ‘package:tibble’:
as_data_frame
The following objects are masked from ‘package:purrr’:
compose, simplify
The following objects are masked from ‘package:dplyr’:
as_data_frame, groups, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
[1] "Initializing CellRouter object"
Loading required package: Matrix
Attaching package: ‘Matrix’
The following object is masked from ‘package:reshape’:
expand
Graph-based clustering
k: 20
similarity type: jaccard
number of principal components: 20
Attaching package: ‘proxy’
The following object is masked from ‘package:Matrix’:
as.matrix
The following objects are masked from ‘package:stats’:
as.dist, dist
The following object is masked from ‘package:base’:
as.matrix
[1] "building k-nearest neighbors graph"
[1] "discoverying subpopulation structure"
[1] "updating CellRouter object"
Error in write.graph.gml(graph, file, ...) :
At rinterface.c:4925 : Cannot write edgelist, File operation error
Calls: findClusters ... graphClustering -> graphClustering -> write.graph -> write.graph.gml
Execution halted
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpBWx0EA/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘igraph’
The following object is masked from ‘package:tibble’:
as_data_frame
The following objects are masked from ‘package:purrr’:
compose, simplify
The following objects are masked from ‘package:dplyr’:
as_data_frame, groups, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
[1] "Initializing CellRouter object"
Loading required package: Matrix
Attaching package: ‘Matrix’
The following object is masked from ‘package:reshape’:
expand
Graph-based clustering
k: 20
similarity type: jaccard
number of principal components: 20
Attaching package: ‘proxy’
The following object is masked from ‘package:Matrix’:
as.matrix
The following objects are masked from ‘package:stats’:
as.dist, dist
The following object is masked from ‘package:base’:
as.matrix
[1] "building k-nearest neighbors graph"
[1] "discoverying subpopulation structure"
[1] "updating CellRouter object"
Error in write.graph.gml(graph, file, ...) :
At rinterface.c:4925 : Cannot write edgelist, File operation error
Calls: findClusters ... graphClustering -> graphClustering -> write.graph -> write.graph.gml
Execution halted
Input saved to /scratch/irc/personal/robrechtc/tmp//Rtmpg6JFZB/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘igraph’
The following object is masked from ‘package:tibble’:
as_data_frame
The following objects are masked from ‘package:purrr’:
compose, simplify
The following objects are masked from ‘package:dplyr’:
as_data_frame, groups, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
[1] "Initializing CellRouter object"
Loading required package: Matrix
Attaching package: ‘Matrix’
The following object is masked from ‘package:reshape’:
expand
Graph-based clustering
k: 20
similarity type: jaccard
number of principal components: 20
Attaching package: ‘proxy’
The following object is masked from ‘package:Matrix’:
as.matrix
The following objects are masked from ‘package:stats’:
as.dist, dist
The following object is masked from ‘package:base’:
as.matrix
[1] "building k-nearest neighbors graph"
[1] "discoverying subpopulation structure"
[1] "updating CellRouter object"
Error in write.graph.gml(graph, file, ...) :
At rinterface.c:4925 : Cannot write edgelist, File operation error
Calls: findClusters ... graphClustering -> graphClustering -> write.graph -> write.graph.gml
Execution halted
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpzUmrjz/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘igraph’
The following object is masked from ‘package:tibble’:
as_data_frame
The following objects are masked from ‘package:purrr’:
compose, simplify
The following objects are masked from ‘package:dplyr’:
as_data_frame, groups, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
[1] "Initializing CellRouter object"
Loading required package: Matrix
Attaching package: ‘Matrix’
The following object is masked from ‘package:reshape’:
expand
Graph-based clustering
k: 20
similarity type: jaccard
number of principal components: 20
Attaching package: ‘proxy’
The following object is masked from ‘package:Matrix’:
as.matrix
The following objects are masked from ‘package:stats’:
as.dist, dist
The following object is masked from ‘package:base’:
as.matrix
[1] "building k-nearest neighbors graph"
[1] "discoverying subpopulation structure"
[1] "updating CellRouter object"
Error in write.graph.gml(graph, file, ...) :
At rinterface.c:4925 : Cannot write edgelist, File operation error
Calls: findClusters ... graphClustering -> graphClustering -> write.graph -> write.graph.gml
Execution halted
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpsZTwRC/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘igraph’
The following object is masked from ‘package:tibble’:
as_data_frame
The following objects are masked from ‘package:purrr’:
compose, simplify
The following objects are masked from ‘package:dplyr’:
as_data_frame, groups, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
[1] "Initializing CellRouter object"
Loading required package: Matrix
Attaching package: ‘Matrix’
The following object is masked from ‘package:reshape’:
expand
Graph-based clustering
k: 20
similarity type: jaccard
number of principal components: 20
Attaching package: ‘proxy’
The following object is masked from ‘package:Matrix’:
as.matrix
The following objects are masked from ‘package:stats’:
as.dist, dist
The following object is masked from ‘package:base’:
as.matrix
[1] "building k-nearest neighbors graph"
[1] "discoverying subpopulation structure"
[1] "updating CellRouter object"
Error in write.graph.gml(graph, file, ...) :
At rinterface.c:4925 : Cannot write edgelist, File operation error
Calls: findClusters ... graphClustering -> graphClustering -> write.graph -> write.graph.gml
Execution halted
Part of 