StemID
Input saved to /scratch/irc/personal/robrechtc/tmp//Rtmpxjdaiw/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘purrr’
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flatten
Loading required package: tsne
Loading required package: pheatmap
Loading required package: MASS
Attaching package: ‘MASS’
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select
Loading required package: cluster
Loading required package: mclust
Package 'mclust' version 5.4.1
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: ‘mclust’
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map
Loading required package: flexmix
Loading required package: lattice
Loading required package: fpc
Loading required package: amap
Loading required package: RColorBrewer
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Loading required package: vegan
Loading required package: permute
This is vegan 2.5-2
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sigma summary: Min. : 0.193779311870069 |1st Qu. : 0.230446348714973 |Median : 0.248062651147028 |Mean : 0.261962019435601 |3rd Qu. : 0.286337385654888 |Max. : 0.399547643507674 |
Epoch: Iteration #100 error is: 11.4309819820632
Epoch: Iteration #200 error is: 0.859218438510082
Epoch: Iteration #300 error is: 0.634931087594606
Epoch: Iteration #400 error is: 0.37830835867238
Epoch: Iteration #500 error is: 0.292238477766712
Epoch: Iteration #600 error is: 0.259377746103511
Epoch: Iteration #700 error is: 0.25443823060474
Epoch: Iteration #800 error is: 0.253332967512225
Epoch: Iteration #900 error is: 0.253171425210966
Epoch: Iteration #1000 error is: 0.253106524239875
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pdishuffle: 2000 output saved in /scratch/irc/personal/robrechtc/tmp//Rtmpxjdaiw/output:
output.rds
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpfFxV7v/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘purrr’
The following object is masked from ‘package:jsonlite’:
flatten
Loading required package: tsne
Loading required package: pheatmap
Loading required package: MASS
Attaching package: ‘MASS’
The following object is masked from ‘package:dplyr’:
select
Loading required package: cluster
Loading required package: mclust
Package 'mclust' version 5.4.1
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: ‘mclust’
The following object is masked from ‘package:purrr’:
map
Loading required package: flexmix
Loading required package: lattice
Loading required package: fpc
Loading required package: amap
Loading required package: RColorBrewer
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Loading required package: vegan
Loading required package: permute
This is vegan 2.5-2
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sigma summary: Min. : 0.205903836007106 |1st Qu. : 0.23728291620384 |Median : 0.262141126238351 |Mean : 0.271493176661038 |3rd Qu. : 0.280177425984492 |Max. : 0.407511073077434 |
Epoch: Iteration #100 error is: 10.7932132274541
Epoch: Iteration #200 error is: 0.636450585452241
Epoch: Iteration #300 error is: 0.605896809358619
Epoch: Iteration #400 error is: 1.42685659745572
Epoch: Iteration #500 error is: 0.904714683299389
Epoch: Iteration #600 error is: 0.64461199432763
Epoch: Iteration #700 error is: 0.511509760466903
Epoch: Iteration #800 error is: 0.401213665119703
Epoch: Iteration #900 error is: 0.390610855778413
Epoch: Iteration #1000 error is: 0.371020253968425
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pdishuffle: 2000 output saved in /scratch/irc/personal/robrechtc/tmp//RtmpfFxV7v/output:
output.rds
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/stemid/r2gridengine/20180803_183727_stemid_EMf2lROd6F/log/log.3.e.txt
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/stemid/r2gridengine/20180803_183727_stemid_EMf2lROd6F/log/log.4.e.txt
Input saved to /scratch/irc/personal/robrechtc/tmp//Rtmpp6g2eG/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Attaching package: ‘purrr’
The following object is masked from ‘package:jsonlite’:
flatten
Loading required package: tsne
Loading required package: pheatmap
Loading required package: MASS
Attaching package: ‘MASS’
The following object is masked from ‘package:dplyr’:
select
Loading required package: cluster
Loading required package: mclust
Package 'mclust' version 5.4.1
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: ‘mclust’
The following object is masked from ‘package:purrr’:
map
Loading required package: flexmix
Loading required package: lattice
Loading required package: fpc
Loading required package: amap
Loading required package: RColorBrewer
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Loading required package: vegan
Loading required package: permute
This is vegan 2.5-2
boot 1
boot 2
boot 3
boot 4
boot 5
boot 6
boot 7
boot 8
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sigma summary: Min. : 0.160188332000231 |1st Qu. : 0.195800297918513 |Median : 0.247738429532985 |Mean : 0.272161804093348 |3rd Qu. : 0.329491371022377 |Max. : 0.465245424262302 |
Epoch: Iteration #100 error is: 17.3693424602978
Epoch: Iteration #200 error is: 1.52094695796656
Epoch: Iteration #300 error is: 1.01892811870712
Epoch: Iteration #400 error is: 0.564389491595077
Epoch: Iteration #500 error is: 0.415446707588641
Epoch: Iteration #600 error is: 0.370026940543377
Epoch: Iteration #700 error is: 0.339841144389813
Epoch: Iteration #800 error is: 0.318543173343781
Epoch: Iteration #900 error is: 0.30323537575386
Epoch: Iteration #1000 error is: 0.290793963314323
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pdishuffle: 50 output saved in /scratch/irc/personal/robrechtc/tmp//Rtmpp6g2eG/output:
output.rds
Part of 