ElPiGraph cycle
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmppIBvzJ/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
[1] "Generating the initial configuration"
[1] "Creating a circle in the plane induced buy the 1st and 2nd PCs with 3 nodes"
[1] "Constructing tree 1 of 1 / Subset 1 of 1"
[1] "Performing PCA on the data"
[1] "Using standard PCA"
[1] "92 dimensions are being used"
[1] "1109.1% of the original variance has been retained"
[1] "The elastic matrix is being used. Edge configuration will be ignored"
[1] "Computing EPG with 50 nodes on 92 points and 92 dimensions"
[1] "Using a single core"
Nodes = 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49
BARCODE ENERGY NNODES NEDGES NRIBS NSTARS NRAYS NRAYS2 MSE MSEP FVE FVEP UE UR URN URN2 URSD
0||50 383.5 50 50 50 0 0 0 362 361.2 0.4524 0.4535 9.496 11.98 599.2 29960 0
324.101 sec elapsedoutput saved in /scratch/irc/personal/robrechtc/tmp//RtmppIBvzJ/output:
output.rds
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/elpicycle/r2gridengine/20180803_183208_elpicycle_BvxBSosbG4/log/log.2.e.txt
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/elpicycle/r2gridengine/20180803_183208_elpicycle_BvxBSosbG4/log/log.3.e.txt
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/elpicycle/r2gridengine/20180803_183208_elpicycle_BvxBSosbG4/log/log.4.e.txt
Input saved to /scratch/irc/personal/robrechtc/tmp//Rtmpq4Aqtv/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
[1] "Generating the initial configuration"
[1] "Creating a circle in the plane induced buy the 1st and 2nd PCs with 3 nodes"
[1] "Constructing tree 1 of 1 / Subset 1 of 1"
[1] "Performing PCA on the data"
[1] "Using standard PCA"
[1] "95 dimensions are being used"
[1] "565.492% of the original variance has been retained"
[1] "The elastic matrix is being used. Edge configuration will be ignored"
[1] "Computing EPG with 50 nodes on 95 points and 95 dimensions"
[1] "Using a single core"
Nodes = 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49
BARCODE ENERGY NNODES NEDGES NRIBS NSTARS NRAYS NRAYS2 MSE MSEP FVE FVEP UE UR URN URN2 URSD
0||50 540.7 50 50 50 0 0 0 503.8 503.4 0.4624 0.4629 14.77 22.12 1106 55310 0
353.294 sec elapsedoutput saved in /scratch/irc/personal/robrechtc/tmp//Rtmpq4Aqtv/output:
output.rds
Part of 