ElPiGraph linear
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/elpilinear/r2gridengine/20180803_183226_elpilinear_XDwEprl1Qx/log/log.1.e.txt
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpPqj5vK/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
[1] "Generating the initial configuration"
[1] "Creating a chain in the 1st PC with 2 nodes"
[1] "Constructing tree 1 of 1 / Subset 1 of 1"
[1] "Performing PCA on the data"
[1] "Using standard PCA"
[1] "94 dimensions are being used"
[1] "773.414% of the original variance has been retained"
[1] "The elastic matrix is being used. Edge configuration will be ignored"
[1] "Computing EPG with 50 nodes on 94 points and 94 dimensions"
[1] "Using a single core"
Nodes = 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49
BARCODE ENERGY NNODES NEDGES NRIBS NSTARS NRAYS NRAYS2 MSE MSEP FVE FVEP UE UR URN URN2 URSD
0||50 543.2 50 49 48 0 0 0 520.6 519.3 0.3944 0.3959 11.29 11.28 564 28200 0
504.264 sec elapsedoutput saved in /scratch/irc/personal/robrechtc/tmp//RtmpPqj5vK/output:
output.rds
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/elpilinear/r2gridengine/20180803_183226_elpilinear_XDwEprl1Qx/log/log.3.e.txt
File: /home/rcannood/Workspace/dynverse/dynbenchmark//derived/04-method_characterisation/method_testing/suite/elpilinear/r2gridengine/20180803_183226_elpilinear_XDwEprl1Qx/log/log.4.e.txt
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpVEFfxK/input:
data.rds
params.json
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
[1] "Generating the initial configuration"
[1] "Creating a chain in the 1st PC with 2 nodes"
[1] "Constructing tree 1 of 1 / Subset 1 of 1"
[1] "Performing PCA on the data"
[1] "Using standard PCA"
[1] "84 dimensions are being used"
[1] "1589.83% of the original variance has been retained"
[1] "The elastic matrix is being used. Edge configuration will be ignored"
[1] "Computing EPG with 50 nodes on 84 points and 84 dimensions"
[1] "Using a single core"
Nodes = 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49
BARCODE ENERGY NNODES NEDGES NRIBS NSTARS NRAYS NRAYS2 MSE MSEP FVE FVEP UE UR URN URN2 URSD
0||50 291.2 50 49 48 0 0 0 275.3 275 0.5172 0.5178 6.796 9.09 454.5 22730 0
496.997 sec elapsedoutput saved in /scratch/irc/personal/robrechtc/tmp//RtmpVEFfxK/output:
output.rds
Part of 