Wishbone
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpmRoiwP/input:
counts.csv
params.json
start_id.json
Target dimensionality reduced to 92.
Building lNN graph...
lNN computed in : 0.04 seconds
Determining waypoints if not specified...
Determining shortest path distances and perspectives....
............................................................................................
Time for determining distances and perspectives: 1.65 seconds
Determining branch point and branch associations...
Running iterations...
Iteration: 2
Correlation with previous iteration: 1.0000
1 realignment iterationsoutput saved in /scratch/irc/personal/robrechtc/tmp//RtmpmRoiwP/output:
dimred.csv
milestone_network.csv
progressions.csv
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpKaqv5f/input:
counts.csv
params.json
start_id.json
Target dimensionality reduced to 94.
Building lNN graph...
lNN computed in : 0.00 seconds
Determining waypoints if not specified...
Determining shortest path distances and perspectives....
..............................................................................................
Time for determining distances and perspectives: 1.29 seconds
Determining branch point and branch associations...
Running iterations...
Iteration: 2
Correlation with previous iteration: 1.0000
1 realignment iterationsoutput saved in /scratch/irc/personal/robrechtc/tmp//RtmpKaqv5f/output:
dimred.csv
milestone_network.csv
progressions.csv
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpG5GWku/input:
counts.csv
params.json
start_id.json
Building lNN graph...
lNN computed in : 0.00 seconds
Determining waypoints if not specified...
Determining shortest path distances and perspectives....
..............................................................................................................................................................................................................................................
Time for determining distances and perspectives: 8.65 seconds
Determining branch point and branch associations...
Running iterations...
Iteration: 2
Correlation with previous iteration: 0.9690
Iteration: 3
Correlation with previous iteration: 0.9924
Iteration: 4
Correlation with previous iteration: 0.9997
Iteration: 5
Correlation with previous iteration: 1.0000
4 realignment iterationsoutput saved in /scratch/irc/personal/robrechtc/tmp//RtmpG5GWku/output:
dimred.csv
milestone_network.csv
progressions.csv
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpDJMS1t/input:
counts.csv
params.json
start_id.json
Building lNN graph...
lNN computed in : 0.00 seconds
Determining waypoints if not specified...
Determining shortest path distances and perspectives....
..........................................................................................................................................................................................................................................................
Time for determining distances and perspectives: 16.58 seconds
Determining branch point and branch associations...
Running iterations...
Iteration: 2
Correlation with previous iteration: 0.9992
Iteration: 3
Correlation with previous iteration: 0.9998
Iteration: 4
Correlation with previous iteration: 1.0000
3 realignment iterationsoutput saved in /scratch/irc/personal/robrechtc/tmp//RtmpDJMS1t/output:
dimred.csv
milestone_network.csv
progressions.csv
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//Rtmpy7ZEjC/input:
counts.csv
params.json
start_id.json
Target dimensionality reduced to 80.
Building lNN graph...
lNN computed in : 0.00 seconds
Determining waypoints if not specified...
Determining shortest path distances and perspectives....
................................................................................
Time for determining distances and perspectives: 1.43 seconds
Determining branch point and branch associations...
Running iterations...
Iteration: 2
Correlation with previous iteration: 0.9999
Iteration: 3
Correlation with previous iteration: 1.0000
2 realignment iterationsoutput saved in /scratch/irc/personal/robrechtc/tmp//Rtmpy7ZEjC/output:
dimred.csv
milestone_network.csv
progressions.csv
pseudotime.csv
timings.json
Part of 